Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Forward (+)

22372889 .. 22376098

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G210100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTGAGGCTCACTGCAGACTTGGTATGGAAAAGCCCCCATTTTTTCAATGCCCTTAAGGAGCGAGAGTTAGATCTTCGAGGTAATAAGATAGCTGTAATCGAAAACTTGGGAGCTACAGAGGACCAATTTGACACCATTGATTTGTCTGACAATGAAATTGTCAAGCTGGAGAATTTACCCTATCTTAATCGTTTGGGTACTTTGATTATCAATAACAATCGAATTACCCGTATCAATCCCAACATTGGAGAGTTCTTGCCAAAGTTACACACCTTAATACTTACCAACAACAGGCTGGTCAACTTGGTAGAGATTGATCCTCTTGAATCCCTTCCGAAGTTGCAGTTTCTTAGCCTGCTGGATAACAACATCACAAAGAAACCCAATTACAGGCTGTATGTGATCCACAAGTTAAAGTCACTTCGGGTTCTAGATTTTAAGAAGGTGAAAAACAAGGAGAGATTGGAAGCACAAACTTTGTTCTCATCTAAAGAAGTTGAAGAAGAGACTAAAAAGGTATCCGCAAAAACTTTCGTGCCAACTGAGGTTCCAAATGTTTCAGACGTTGCCGAGGAACAACAGACACCAAAAGTAGTTGCCCCCACTCCCGAGCAAATTATGGCTATCAAGGCTGCCATAGTGAATTCCCAGACTCTTGAAGAAGTTGCAAGACTTGAACAGGCACTGAAGTCAGGTCAGCTTCCTGCGGATTTGAAAATCTTGGATGATGATACCGAGACAAATAGTGTTAAAGTAAATGATGATAAAATGGAAGTCAATAGTGAAAATGAGGCTAATGCACCAAAAGATGTGGATGAACAGAAGAAAGATGAAGCAGAACCCATGGAACAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

287

Amino Acids

32.52

Weight (kDa)

4.99

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	525, 710
AclWI	GGATC	2 cut(s)	314, 400
AcsI	RAATTY	2 cut(s)	175, 646
AcuI	CTGAAG	1 cut(s)	710
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	3 cut(s)	248, 294, 393
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	6 cut(s)	49, 329, 503, 662, 680, 718
AluBI	AGCT	4 cut(s)	95, 116, 169, 703
AluI	AGCT	4 cut(s)	95, 116, 169, 703
Alw26I	GTCTC	2 cut(s)	503, 734
AlwI	GGATC	2 cut(s)	314, 400
AlwNI	CAGNNNCTG	1 cut(s)	688
Ama87I	CYCGRG	1 cut(s)	611
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	2 cut(s)	175, 646
Asp700I	GAANNNNTTC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	16, 460
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	622
BciVI	GTATCC	1 cut(s)	532
BcoDI	GTCTC	2 cut(s)	503, 734
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	15, 117
BfrI	CTTAAG	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	532
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	636
BlsI	GCNGC	1 cut(s)	637
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	573, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 294, 393
BseDI	CCNNGG	2 cut(s)	573, 846
BseGI	GGATG	2 cut(s)	733, 823
BseLI	CCNNNNNNNGG	3 cut(s)	248, 294, 393
BseMII	CTCAG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	611
BslI	CCNNNNNNNGG	3 cut(s)	248, 294, 393
BsmAI	GTCTC	2 cut(s)	503, 734
BsoBI	CYCGRG	1 cut(s)	611
Bsp143I	GATC	3 cut(s)	73, 319, 405
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	2 cut(s)	525, 710
BspCNI	CTCAG	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	19
BspPI	GGATC	2 cut(s)	314, 400
BspTI	CTTAAG	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	573, 846
BssMI	GATC	3 cut(s)	73, 319, 405
BssT1I	CCWWGG	1 cut(s)	846
Bst6I	CTCTTC	1 cut(s)	501
BstAFI	CTTAAG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	2 cut(s)	353, 546
BstDSI	CCRYGG	1 cut(s)	846
BstF5I	GGATG	2 cut(s)	733, 823
BstKTI	GATC	3 cut(s)	76, 322, 408
BstMAI	GTCTC	2 cut(s)	503, 734
BstMBI	GATC	3 cut(s)	73, 319, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstSFI	CTRYAG	2 cut(s)	15, 117
BstV1I	GCAGC	1 cut(s)	622
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	532
BtgI	CCRYGG	1 cut(s)	846
BtsCI	GGATG	2 cut(s)	733, 823
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 686
Cac8I	GCNNGC	1 cut(s)	359
CaiI	CAGNNNCTG	1 cut(s)	688
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	201
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	1 cut(s)	847
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	2 cut(s)	353, 546
DpnI	GATC	3 cut(s)	75, 321, 407
DpnII	GATC	3 cut(s)	73, 319, 405
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	846
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	1 cut(s)	850
FaiI	YATR	5 cut(s)	28, 402, 623, 641, 848
FatI	CATG	1 cut(s)	846
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	2 cut(s)	740, 830
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	191
Hin1II	CATG	1 cut(s)	850
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	329, 655
HphI	GGTGA	2 cut(s)	16, 460
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	151, 339, 565
Hpy188III	TCNNGA	4 cut(s)	326, 434, 611, 659
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	344, 439
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	4 cut(s)	17, 346, 671, 803
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	2 cut(s)	353, 546
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	1 cut(s)	850
Kzo9I	GATC	3 cut(s)	73, 319, 405
LmnI	GCTCC	2 cut(s)	61, 113
Lsp1109I	GCAGC	1 cut(s)	622
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	267, 420
MalI	GATC	3 cut(s)	75, 321, 407
MboI	GATC	3 cut(s)	73, 319, 405
MboII	GAAGA	5 cut(s)	68, 515, 518, 674, 838
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	7 cut(s)	128, 159, 175, 225, 388, 618, 646
MlyI	GAGTC	1 cut(s)	649
MnlI	CCTC	6 cut(s)	74, 115, 333, 541, 568, 787
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	6 cut(s)	57, 189, 278, 416, 441, 753
MspCI	CTTAAG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	632
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	3 cut(s)	73, 319, 405
NlaIII	CATG	1 cut(s)	850
NlaIV	GGNNCC	1 cut(s)	552
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SaqAI	TTAA	6 cut(s)	57, 189, 278, 416, 441, 753
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	3 cut(s)	73, 319, 405
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	649
SfcI	CTRYAG	2 cut(s)	15, 117
SinI	GGWCC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	7 cut(s)	128, 159, 175, 225, 388, 618, 646
SsiI	CCGC	2 cut(s)	525, 710
SspMI	CTAG	1 cut(s)	434
StyI	CCWWGG	1 cut(s)	846
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	79, 102, 223
TasI	AATT	7 cut(s)	128, 159, 175, 225, 388, 618, 646
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	6 cut(s)	57, 189, 278, 416, 441, 753
Tru9I	TTAA	6 cut(s)	57, 189, 278, 416, 441, 753
TscAI	CASTG	2 cut(s)	19, 693
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	3 cut(s)	171, 834, 849
TspRI	CASTG	2 cut(s)	19, 693
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	2 cut(s)	175, 646
XbaI	TCTAGA	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.