Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007366

Physical Location & Seq

Genomic Coordinates Reverse (-)

8040099 .. 8043354

Gene Structure 3256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGAGGCTGACTGCCGACTTGGTATGGAAGAGCCCTCACTTCTTCAATGCTCTTAAGGAGCGAGAGTTGGATCTCCGAGGTAATAAGATTGCTGTAATTGAAAACTTGGGAGCTACAGAGGACCAATTTGACACCATTGATTTGTCTGACAATGAAATCGTCAAGCTCGAAAACATGCCCTATCTTAATCGTTTGGGTACTGTGATTATTAATAACAACCGAATCACCCGTATCAATCCCAACATTGGAGAGTTCTTGCCGAAGTTACACACCTTGGTGCTTACTAACAACAGGCTAGTCAACCTGGTAGAGATCGACCCTCTTGCGTCCCTCCCAAAGTTGCAGTACCTTAGCCTTTTGGATAACAACATCACCAAGAAACCCAACTATAGGCTGTACTTGATTCATAAGTTAAAATCGCTTCGGGTTCTGGATTTTAAGAAGGTGAAAAACAAGGAGAGACTGGAAGCACAAACTTTGTTTTCATCTAAAGAGGTTGAAGAAGAGACTAGAAAGGTATCTCCCCAAAAATTCATGCCTGCAGAGGTTCCAGAAGTTTCCCAGGAACAACAGGCTCCAAAAGTTGTTGCCCCCACTCCTGAACAAATTATGAAAATCAAGGCTGCCATAGTGAATTCCTCAACTCTTGAAGAGGTTGCTAGACTTGAAAAGGCACTGAAGTCAGGTCAGCTTCCTGCAGATTTGGAAATTTTTGATGATGATGCTGAACCCAATAGTGTCCAAGAAAAGGATGATAAAATGGACACAAGTACTGAAAATGAGGCTAGTACTGAACCAAAAGAGATGGAGGAGCAGAAGAACGATGAAGCTGAAGTGATGGAACAGGATATTGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010467 GO:0015030 GO:0016070 GO:0016071 GO:0016604 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

LRR_9

Protein Analysis

288

Amino Acids

32.7

Weight (kDa)

4.93

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_9	PF14580	1 - 174	3.3e-79	Leucine-rich repeat
LRR_8	PF13855	65 - 125	1.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09760
fragaria_vesca	FvH4_4g21991
malus_domestica	MD13G1135200.v1.1 MD16G1130900.v1.1
prunus_persica	Prupe.1G210100_v2.0.a1
pyrus_communis	pycom13g11800 pycom16g11540
rosa_chinensis	RchiOBHm_Chr4g0428191
rosa_laevigata	RLG00000007171
rosa_multiflora	Rmu_sc0000744.1_g000083 Rmu_sc0004940.1_g000005 Rmu_sc0005142.1_g000001 Rmu_sc0009599.1_g000004
rosa_roxburghii	Rroxscaffold_5G00369920
rosa_rugosa	Rorug04G0182200 Rorug04G0182300 Rorug04G0182400 Rorug04G0182500 Rorug04G0223400 Rorug04G0223500
rosa_samantha	Rh4AG280700 Rh4BG286200 Rh4CG301900
rosa_wichuraiana	Rw4G020900 Rw4G024380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	3 cut(s)	533, 637, 711
AcuI	CTGAAG	2 cut(s)	701, 855
AfaI	GTAC	5 cut(s)	202, 350, 401, 775, 793
AfiI	CCNNNNNNNGG	3 cut(s)	248, 393, 751
AflII	CTTAAG	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	49, 104, 503, 653, 671
AjnI	CCWGG	2 cut(s)	306, 564
AleI	CACNNNNGTG	1 cut(s)	278
AluBI	AGCT	4 cut(s)	116, 169, 694, 833
AluI	AGCT	4 cut(s)	116, 169, 694, 833
Alw26I	GTCTC	2 cut(s)	457, 503
AlwI	GGATC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	3 cut(s)	533, 637, 711
AseI	ATTAAT	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	4 cut(s)	16, 220, 367, 460
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	802, 835
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	2 cut(s)	308, 566
BcoDI	GTCTC	2 cut(s)	457, 503
BfaI	CTAG	4 cut(s)	299, 513, 663, 789
BfmI	CTRYAG	4 cut(s)	117, 391, 543, 699
BfrI	CTTAAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
BmcAI	AGTACT	2 cut(s)	775, 793
Bme1390I	CCNGG	2 cut(s)	308, 566
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	552, 579
BmrFI	CCNGG	2 cut(s)	308, 566
BmsI	GCATC	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	79, 276, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	248, 393, 751
Bse1I	ACTGG	1 cut(s)	471
BseBI	CCWGG	2 cut(s)	308, 566
BseDI	CCNNGG	3 cut(s)	79, 276, 564
BseGI	GGATG	1 cut(s)	760
BseLI	CCNNNNNNNGG	3 cut(s)	248, 393, 751
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	827
BseXI	GCAGC	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	248, 393, 751
BsmAI	GTCTC	2 cut(s)	457, 503
BsmFI	GGGAC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	73, 315
BspLI	GGNNCC	2 cut(s)	552, 579
BspMAI	CTGCAG	2 cut(s)	547, 703
BspPI	GGATC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	26
BspTI	CTTAAG	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	79, 276, 564
BssMI	GATC	2 cut(s)	73, 315
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	308, 566
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	3 cut(s)	26, 501, 648
BstAFI	CTTAAG	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	760
BstKTI	GATC	2 cut(s)	76, 318
BstMAI	GTCTC	2 cut(s)	457, 503
BstMBI	GATC	2 cut(s)	73, 315
BstNI	CCWGG	2 cut(s)	308, 566
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	306, 564
BstSFI	CTRYAG	4 cut(s)	117, 391, 543, 699
BstV1I	GCAGC	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	760
BtsIMutI	CAGTG	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	318
CsiI	ACCWGGT	1 cut(s)	306
Csp6I	GTAC	5 cut(s)	201, 349, 400, 774, 792
CviAII	CATG	2 cut(s)	178, 538
CviQI	GTAC	5 cut(s)	201, 349, 400, 774, 792
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	2 cut(s)	75, 317
DpnII	GATC	2 cut(s)	73, 315
Eam1104I	CTCTTC	3 cut(s)	26, 501, 648
EarI	CTCTTC	3 cut(s)	26, 501, 648
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	701, 855
EcoRI	GAATTC	1 cut(s)	637
EcoRII	CCWGG	2 cut(s)	306, 564
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	181, 541
FaiI	YATR	7 cut(s)	28, 179, 393, 411, 539, 614, 632
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	177, 537
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	1 cut(s)	767
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	4 cut(s)	299, 513, 663, 789
GluI	GCNGC	1 cut(s)	627
HgaI	GACGC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	181, 541
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	2 cut(s)	225, 406
HphI	GGTGA	4 cut(s)	16, 220, 367, 460
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	80, 151
Hpy188III	TCNNGA	4 cut(s)	434, 554, 602, 650
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	4 cut(s)	346, 545, 701, 857
HpyF3I	CTNAG	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	181, 541
Kzo9I	GATC	2 cut(s)	73, 315
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	4 cut(s)	61, 113, 583, 814
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	1 cut(s)	715
MabI	ACCWGGT	1 cut(s)	306
MaeI	CTAG	4 cut(s)	299, 513, 663, 789
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	2 cut(s)	75, 317
MboI	GATC	2 cut(s)	73, 315
MboII	GAAGA	6 cut(s)	37, 43, 515, 518, 665, 832
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	6 cut(s)	99, 128, 533, 609, 637, 711
MmeI	TCCRAC	1 cut(s)	51
MseI	TTAA	5 cut(s)	57, 189, 213, 416, 441
MslI	CAYNNNNRTG	1 cut(s)	278
MspCI	CTTAAG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	308, 566
MvaI	CCWGG	2 cut(s)	308, 566
NdeII	GATC	2 cut(s)	73, 315
NlaIII	CATG	2 cut(s)	181, 541
NlaIV	GGNNCC	2 cut(s)	552, 579
NspI	RCATGY	1 cut(s)	181
OliI	CACNNNNGTG	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	225, 406
PkrI	GCNGC	1 cut(s)	628
PshBI	ATTAAT	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	306, 564
PspGI	CCWGG	2 cut(s)	306, 564
PspN4I	GGNNCC	2 cut(s)	552, 579
PspPI	GGNCC	1 cut(s)	124
PstI	CTGCAG	2 cut(s)	547, 703
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	5 cut(s)	202, 350, 401, 775, 793
RsaNI	GTAC	5 cut(s)	201, 349, 400, 774, 792
RseI	CAYNNNNRTG	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	5 cut(s)	57, 189, 213, 416, 441
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	2 cut(s)	73, 315
Sau96I	GGNCC	1 cut(s)	124
ScaI	AGTACT	2 cut(s)	775, 793
ScrFI	CCNGG	2 cut(s)	308, 566
SduI	GDGCHC	1 cut(s)	38
SexAI	ACCWGGT	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	715
SfcI	CTRYAG	4 cut(s)	117, 391, 543, 699
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	6 cut(s)	99, 128, 533, 609, 637, 711
SspMI	CTAG	4 cut(s)	299, 513, 663, 789
StyD4I	CCNGG	2 cut(s)	306, 564
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	171, 318
TasI	AATT	6 cut(s)	99, 128, 533, 609, 637, 711
TatI	WGTACW	3 cut(s)	399, 773, 791
TfiI	GAWTC	2 cut(s)	225, 406
Tru1I	TTAA	5 cut(s)	57, 189, 213, 416, 441
Tru9I	TTAA	5 cut(s)	57, 189, 213, 416, 441
TscAI	CASTG	1 cut(s)	684
TseI	GCWGC	1 cut(s)	626
TspDTI	ATGAA	6 cut(s)	171, 398, 477, 526, 629, 843
TspRI	CASTG	1 cut(s)	684
Vha464I	CTTAAG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	3 cut(s)	533, 637, 711
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	4 cut(s)	299, 513, 663, 789
ZrmI	AGTACT	2 cut(s)	775, 793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.