AT1G09820

pentatricopeptide

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
3190254 .. 3192488
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09820.1

Sequence Viewer

Length: 1821 bp
ATGTTCCCCAAATCCTTAGCCGTAAGTAGAAAAAACTCGAATTTAACAAAAGGAGTCTCTGGTTTAAGAAGACTCTGTTCTTCTTCATCTACCATCACCGGGAGCCCTTGCCCACCTAGATATGACGTAGCTGTCATCGCTGATCTCATAGAGAAGCAGCACTGGTCAAAGCTCGGAGTTCATGTGACAGACATAAACCCTAACGAGCTGTTTCGACAGTTGATAAGTTCTGAGCTTGACCCAGATTTGTGTCTCAGGTACTATTCCTGGTTAGTGAAGAACAGTGACATCTCTGTTTCACTTGAGCTCACATTTAAGCTCTTGCATTCTCTTGCCAATGCGAAAAGGTACTCAAAAATCCGATCTTTCCTTGATGGGTTTGTGAGAAATGGATCTGATCATCAAGTTCACTCGATTTTCCATGCAATCTCTATGTGTGACAATGTTTGTGTCAATTCGATTATAGCTGATATGTTGGTATTAGCTTATGCGAATAATTCGAGATTCGAGTTAGGATTTGAGGCGTTTAAGCGTTCAGGTTATTATGGGTATAAGTTGTCGGCTTTGTCTTGTAAGCCTTTGATGATTGCGTTGTTGAAGGAGAATCGTTCTGCTGATGTTGAATATGTGTATAAGGAGATGATTAGGAGGAAGATTCAACCAAATGTGTTCACTTTCAATGTTGTGATCAATGCGTTGTGCAAAACTGGGAAAATGAATAAAGCTAGGGATGTTATGGAGGACATGAAAGTTTATGGGTGTTCTCCAAATGTAGTTAGTTACAACACTCTCATTGATGGGTATTGTAAGCTTGGTGGAAATGGGAAAATGTACAAAGCAGACGCGGTTTTGAAGGAAATGGTGGAGAATGATGTGTCTCCGAACTTGACTACATTCAATATATTGATTGATGGGTTCTGGAAAGATGACAACCTTCCGGGGAGTATGAAGGTGTTTAAAGAGATGCTGGATCAAGACGTGAAACCGAATGTGATCTCGTATAATTCATTGATAAATGGTTTGTGCAATGGAGGAAAGATCAGCGAGGCTATTAGTATGCGCGATAAGATGGTAAGTGCAGGTGTGCAGCCTAACCTAATTACTTACAATGCTCTTATAAATGGGTTTTGCAAGAACGATATGCTGAAGGAAGCTCTTGATATGTTTGGCTCAGTGAAAGGCCAAGGAGCTGTTCCCACTACTAGAATGTATAACATGCTTATCGATGCGTATTGTAAGTTAGGCAAAATCGATGATGGCTTTGCACTGAAAGAAGAGATGGAGCGGGAGGGGATTGTACCAGATGTTGGAACTTATAATTGCTTGATTGCTGGTCTATGTAGAAACGGTAACATAGAAGCAGCTAAGAAGCTTTTTGATCAGTTGACTAGTAAAGGACTTCCTGACCTTGTGACGTTTCACATACTAATGGAGGGATATTGCAGAAAAGGTGAATCGAGAAAAGCAGCAATGCTTTTGAAAGAAATGTCAAAGATGGGGCTGAAACCGAGACATCTGACTTATAACATTGTGATGAAAGGCTACTGTAAGGAAGGAAATCTGAAGGCAGCAACGAACATGAGGACACAGATGGAGAAAGAAAGACGGTTGCGAATGAATGTAGCGTCATATAATGTGCTTCTGCAAGGATATTCTCAAAAGGGAAAGTTGGAGGATGCAAACATGCTTTTGAATGAGATGTTAGAGAAAGGTCTAGTCCCGAACCGAATAACCTATGAGATAGTTAAAGAAGAAATGGTAGATCAAGGTTTCGTCCCAGACATTGAAGGGCATCTATTCAACGTCTCTACCAAATCCTAA

Protein Analysis

606

Amino Acids

68.05

Weight (kDa)

8.86

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 194 - 235 2.4e-09 PPR repeat family
PPR_long PF17177 211 - 338 6.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 211 - 268 5.2e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 219 - 250 2.2e-09 PPR repeat
PPR_2 PF13041 221 - 270 5.7e-20 PPR repeat family
PPR PF01535 224 - 254 3.7e-07 PPR repeat
PPR_1 PF12854 253 - 287 4.7e-09 PPR repeat
PPR_2 PF13041 273 - 306 4.3e-07 PPR repeat family
PPR_long PF17177 282 - 373 7.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 283 - 339 3.1e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 316 - 343 1.6e-07 PPR repeat family
PPR_1 PF12854 326 - 358 4.7e-11 PPR repeat
PPR_2 PF13041 329 - 378 5.9e-18 PPR repeat family
PPR PF01535 332 - 362 3e-07 PPR repeat
PPR_3 PF13812 355 - 411 9.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 361 - 389 7e-11 PPR repeat
PPR_2 PF13041 364 - 400 3.3e-07 PPR repeat family
PPR PF01535 367 - 395 2.4e-07 PPR repeat
PPR_1 PF12854 396 - 428 6.4e-09 PPR repeat
PPR_2 PF13041 399 - 448 1.3e-15 PPR repeat family
PPR PF01535 403 - 432 4.1e-07 PPR repeat
PPR_3 PF13812 423 - 477 4.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 431 - 461 5.9e-12 PPR repeat
PPR_2 PF13041 434 - 477 6.2e-12 PPR repeat family
PPR PF01535 438 - 467 2.2e-07 PPR repeat
PPR_1 PF12854 468 - 497 4.5e-07 PPR repeat
PPR_3 PF13812 468 - 516 3.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 468 - 517 3.1e-14 PPR repeat family
PPR_1 PF12854 499 - 532 1.1e-07 PPR repeat
PPR_3 PF13812 535 - 581 5.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 540 - 581 4.7e-13 PPR repeat family
PPR PF01535 543 - 572 1.6e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1118, 1317, 1524
AarI CACCTGC 1 cut(s) 1070
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 1070
AccB7I CCANNNNNTGG 1 cut(s) 1307
AccBSI CCGCTC 1 cut(s) 1285
AccII CGCG 2 cut(s) 845, 1062
AciI CCGC 2 cut(s) 845, 1285
AclWI GGATC 2 cut(s) 400, 978
AcsI RAATTY 1 cut(s) 40
AcuI CTGAAG 2 cut(s) 1166, 1583
AfaI GTAC 4 cut(s) 260, 350, 833, 1299
AfiI CCNNNNNNNGG 2 cut(s) 99, 1307
AhlI ACTAGT 1 cut(s) 1388
AjiI CACGTC 1 cut(s) 979
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 1176, 1208
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 5 cut(s) 61, 257, 882, 1504, 1810
AlwI GGATC 2 cut(s) 400, 978
AoxI GGCC 1 cut(s) 1180
ApeKI GCWGC 5 cut(s) 157, 1087, 1361, 1466, 1568
ApoI RAATTY 1 cut(s) 40
AspLEI GCGC 1 cut(s) 1062
AsuC2I CCSGG 2 cut(s) 100, 939
AsuHPI GGTGA 2 cut(s) 88, 1463
BanII GRGCYC 2 cut(s) 107, 309
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 5 cut(s) 169, 1099, 1373, 1478, 1580
BccI CCATC 9 cut(s) 101, 368, 791, 905, 1063, 1250, 1273, 1489, 1585
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 268
BclI TGATCA 3 cut(s) 397, 687, 1378
BcnI CCSGG 2 cut(s) 100, 939
BcoDI GTCTC 5 cut(s) 61, 257, 882, 1504, 1810
BcuI ACTAGT 1 cut(s) 1388
BfaI CTAG 5 cut(s) 117, 726, 1203, 1389, 1715
BfuAI ACCTGC 1 cut(s) 1070
BisI GCNGC 5 cut(s) 158, 1088, 1362, 1467, 1569
BlsI GCNGC 5 cut(s) 159, 1089, 1363, 1468, 1570
Bme1390I CCNGG 3 cut(s) 100, 268, 939
BmgBI CACGTC 1 cut(s) 979
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 3 cut(s) 100, 268, 939
BmrI ACTGGG 1 cut(s) 717
BmsI GCATC 4 cut(s) 954, 1216, 1666, 1801
BmuI ACTGGG 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 2 cut(s) 100, 939
Bsa29I ATCGAT 2 cut(s) 1224, 1251
BsaJI CCNNGG 2 cut(s) 938, 1183
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 1307
Bse1I ACTGG 2 cut(s) 167, 712
Bse3DI GCAATG 2 cut(s) 1033, 1476
BseBI CCWGG 1 cut(s) 268
BseCI ATCGAT 2 cut(s) 1224, 1251
BseDI CCNNGG 2 cut(s) 938, 1183
BseGI GGATG 2 cut(s) 736, 1681
BseLI CCNNNNNNNGG 2 cut(s) 99, 1307
BseMI GCAATG 2 cut(s) 1033, 1476
BseMII CTCAG 3 cut(s) 222, 268, 1185
BseNI ACTGG 2 cut(s) 167, 712
BseXI GCAGC 5 cut(s) 169, 1099, 1373, 1478, 1580
BsgI GTGCAG 2 cut(s) 1098, 1106
Bsh1236I CGCG 2 cut(s) 845, 1062
BshFI GGCC 1 cut(s) 1182
BshVI ATCGAT 2 cut(s) 1224, 1251
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 2 cut(s) 99, 938
BslFI GGGAC 2 cut(s) 1703, 1760
BslI CCNNNNNNNGG 2 cut(s) 99, 1307
BsmAI GTCTC 5 cut(s) 61, 257, 882, 1504, 1810
BsmBI CGTCTC 1 cut(s) 1810
BsmFI GGGAC 2 cut(s) 1703, 1760
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 1182
Bsp1286I GDGCHC 2 cut(s) 107, 309
Bsp1407I TGTACA 1 cut(s) 831
BspACI CCGC 2 cut(s) 845, 1285
BspANI GGCC 1 cut(s) 1182
BspCNI CTCAG 3 cut(s) 223, 267, 1184
BspDI ATCGAT 2 cut(s) 1224, 1251
BspFNI CGCG 2 cut(s) 845, 1062
BspLI GGNNCC 1 cut(s) 104
BspMI ACCTGC 1 cut(s) 1070
BspPI GGATC 2 cut(s) 400, 978
BsrBI CCGCTC 1 cut(s) 1285
BsrDI GCAATG 2 cut(s) 1033, 1476
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 2 cut(s) 167, 712
BssECI CCNNGG 2 cut(s) 938, 1183
BssT1I CCWWGG 1 cut(s) 1183
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 5 cut(s) 219, 284, 1349, 1547, 1608
Bst6I CTCTTC 1 cut(s) 1269
BstAUI TGTACA 1 cut(s) 831
BstDEI CTNAG 5 cut(s) 16, 231, 254, 1171, 1365
BstF5I GGATG 2 cut(s) 736, 1681
BstFNI CGCG 2 cut(s) 845, 1062
BstHHI GCGC 1 cut(s) 1062
BstMAI GTCTC 5 cut(s) 61, 257, 882, 1504, 1810
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 2 cut(s) 1219, 1687
BstSCI CCNGG 3 cut(s) 98, 266, 937
BstUI CGCG 2 cut(s) 845, 1062
BstV1I GCAGC 5 cut(s) 169, 1099, 1373, 1478, 1580
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
Bsu15I ATCGAT 2 cut(s) 1224, 1251
BsuRI GGCC 1 cut(s) 1182
BsuTUI ATCGAT 2 cut(s) 1224, 1251
BtgZI GCGATG 1 cut(s) 121
BtrI CACGTC 1 cut(s) 979
BtsCI GGATG 2 cut(s) 736, 1681
BtsIMutI CAGTG 4 cut(s) 160, 289, 1179, 1265
BveI ACCTGC 1 cut(s) 1070
CfoI GCGC 1 cut(s) 1062
ClaI ATCGAT 2 cut(s) 1224, 1251
CseI GACGC 2 cut(s) 851, 1614
Csp6I GTAC 4 cut(s) 259, 349, 832, 1298
CviAII CATG 6 cut(s) 182, 422, 745, 1216, 1579, 1684
CviQI GTAC 4 cut(s) 259, 349, 832, 1298
DdeI CTNAG 5 cut(s) 16, 231, 254, 1171, 1365
DraI TTTAAA 1 cut(s) 958
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 1269
EarI CTCTTC 1 cut(s) 1269
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 1183
Eco24I GRGCYC 2 cut(s) 107, 309
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 1166, 1583
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 1183
EcoT38I GRGCYC 2 cut(s) 107, 309
ErhI CCWWGG 1 cut(s) 1183
Esp3I CGTCTC 1 cut(s) 1810
FaeI CATG 6 cut(s) 185, 425, 748, 1219, 1582, 1687
FaqI GGGAC 2 cut(s) 1703, 1760
FatI CATG 6 cut(s) 181, 421, 744, 1215, 1578, 1683
FauI CCCGC 1 cut(s) 1278
FbaI TGATCA 3 cut(s) 397, 687, 1378
Fnu4HI GCNGC 5 cut(s) 158, 1088, 1362, 1467, 1569
FokI GGATG 2 cut(s) 743, 1688
FriOI GRGCYC 2 cut(s) 107, 309
Fsp4HI GCNGC 5 cut(s) 158, 1088, 1362, 1467, 1569
FspBI CTAG 5 cut(s) 117, 726, 1203, 1389, 1715
GlaI GCGC 1 cut(s) 1061
GluI GCNGC 5 cut(s) 158, 1088, 1362, 1467, 1569
HaeIII GGCC 1 cut(s) 1182
HapII CCGG 2 cut(s) 99, 938
HgaI GACGC 2 cut(s) 851, 1614
HhaI GCGC 1 cut(s) 1062
Hin1II CATG 6 cut(s) 185, 425, 748, 1219, 1582, 1687
Hin6I GCGC 1 cut(s) 1060
HinP1I GCGC 1 cut(s) 1060
HincII GTYRAC 1 cut(s) 1386
HindII GTYRAC 1 cut(s) 1386
HindIII AAGCTT 2 cut(s) 809, 1370
HinfI GANTC 6 cut(s) 54, 72, 504, 604, 655, 1454
HpaII CCGG 2 cut(s) 99, 938
HphI GGTGA 2 cut(s) 88, 1463
Hpy166II GTNNAC 3 cut(s) 409, 672, 1386
Hpy188I TCNGA 7 cut(s) 176, 232, 362, 397, 882, 1518, 1563
Hpy188III TCNNGA 7 cut(s) 501, 919, 974, 1157, 1403, 1458, 1720
Hpy8I GTNNAC 3 cut(s) 409, 672, 1386
HpyAV CCTTC 8 cut(s) 592, 847, 943, 944, 1141, 1547, 1558, 1781
HpyCH4III ACNGT 5 cut(s) 219, 284, 1349, 1547, 1608
HpyCH4IV ACGT 4 cut(s) 126, 978, 1415, 1803
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 5 cut(s) 16, 231, 254, 1171, 1365
HpySE526I ACGT 4 cut(s) 126, 978, 1415, 1803
Hsp92II CATG 6 cut(s) 185, 425, 748, 1219, 1582, 1687
HspAI GCGC 1 cut(s) 1060
Ksp22I TGATCA 3 cut(s) 397, 687, 1378
LmnI GCTCC 3 cut(s) 102, 1187, 1282
Lsp1109I GCAGC 5 cut(s) 169, 1099, 1373, 1478, 1580
LweI GCATC 4 cut(s) 954, 1216, 1666, 1801
MaeI CTAG 5 cut(s) 117, 726, 1203, 1389, 1715
MaeII ACGT 4 cut(s) 126, 978, 1415, 1803
MaeIII GTNAC 6 cut(s) 184, 284, 437, 779, 1349, 1411
MbiI CCGCTC 1 cut(s) 1285
MboII GAAGA 7 cut(s) 72, 75, 81, 289, 664, 1286, 1763
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 107, 309
MluCI AATT 6 cut(s) 40, 454, 496, 1003, 1098, 1318
MlyI GAGTC 2 cut(s) 63, 66
MmeI TCCRAC 2 cut(s) 1288, 1650
MnlI CCTC 9 cut(s) 514, 642, 733, 1025, 1039, 1282, 1426, 1575, 1666
MseI TTAA 6 cut(s) 44, 65, 315, 528, 957, 1746
MslI CAYNNNNRTG 2 cut(s) 1427, 1532
MspI CCGG 2 cut(s) 99, 938
MspR9I CCNGG 3 cut(s) 100, 268, 939
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 2 cut(s) 845, 1062
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 2 cut(s) 100, 939
NlaIII CATG 6 cut(s) 185, 425, 748, 1219, 1582, 1687
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 4 cut(s) 184, 284, 437, 1411
NspI RCATGY 2 cut(s) 1219, 1687
PaqCI CACCTGC 1 cut(s) 1070
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 4 cut(s) 504, 604, 655, 1454
PflMI CCANNNNNTGG 1 cut(s) 1307
PkrI GCNGC 5 cut(s) 159, 1089, 1363, 1468, 1570
PleI GAGTC 2 cut(s) 62, 66
PpsI GAGTC 2 cut(s) 62, 66
PsiI TTATAA 3 cut(s) 1118, 1317, 1524
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 4 cut(s) 260, 350, 833, 1299
RsaNI GTAC 4 cut(s) 259, 349, 832, 1298
RseI CAYNNNNRTG 2 cut(s) 1427, 1532
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 6 cut(s) 44, 65, 315, 528, 957, 1746
SatI GCNGC 5 cut(s) 158, 1088, 1362, 1467, 1569
SchI GAGTC 2 cut(s) 63, 66
ScrFI CCNGG 3 cut(s) 100, 268, 939
SduI GDGCHC 2 cut(s) 107, 309
SfaNI GCATC 4 cut(s) 954, 1216, 1666, 1801
SmiMI CAYNNNNRTG 2 cut(s) 1427, 1532
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 1388
Sse9I AATT 6 cut(s) 40, 454, 496, 1003, 1098, 1318
SsiI CCGC 2 cut(s) 845, 1285
SspMI CTAG 5 cut(s) 117, 726, 1203, 1389, 1715
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 98, 266, 937
StyI CCWWGG 1 cut(s) 1183
TaaI ACNGT 5 cut(s) 219, 284, 1349, 1547, 1608
TaiI ACGT 4 cut(s) 129, 981, 1418, 1806
TaqI TCGA 9 cut(s) 38, 214, 413, 458, 500, 507, 1224, 1251, 1457
TasI AATT 6 cut(s) 40, 454, 496, 1003, 1098, 1318
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 4 cut(s) 504, 604, 655, 1454
Tru1I TTAA 6 cut(s) 44, 65, 315, 528, 957, 1746
Tru9I TTAA 6 cut(s) 44, 65, 315, 528, 957, 1746
TscAI CASTG 4 cut(s) 167, 289, 1179, 1272
TseFI GTSAC 4 cut(s) 184, 284, 437, 1411
TseI GCWGC 5 cut(s) 157, 1087, 1361, 1466, 1568
Tsp45I GTSAC 4 cut(s) 184, 284, 437, 1411
TspDTI ATGAA 8 cut(s) 75, 170, 731, 761, 962, 996, 1550, 1631
TspRI CASTG 4 cut(s) 167, 289, 1179, 1272
Van91I CCANNNNNTGG 1 cut(s) 1307
XapI RAATTY 1 cut(s) 40
XceI RCATGY 2 cut(s) 1219, 1687
XspI CTAG 5 cut(s) 117, 726, 1203, 1389, 1715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.