Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000488.1

Orthogroup ID

OG0008008

Physical Location & Seq

Genomic Coordinates Forward (+)

7344 .. 9128

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000488.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

atgcatcccagacttcaaattctccacaaaagcaaacagattgtgaggactctctgctctttaactcccacatcggaaaaattgaatcttccactggtttcagagctattagcaaagcagaggtggtcagagctcagaacccatctcaaagactcggactttacctcagtttttcatcaggttttggattctggagcagacccagtactgatactcaggtacttacattgttgccagaaggatttcaatgctgcacataatctggaactcacttttagactcttgggttcattagcaatagccaaaaggtactcaaagattagagcttttttacatgggttcgttagaagcaatgaaaagctatcaaattctgcaatttttaactcgctttcgttgggtagtaaacatttggctgcaaattccattattgttaacttgttggtgttggcatatgcgaaaaatttgaagacccatttgggtgttgaagcatttcagaaagctggtgattatgggttcaagttggtggtgttttcttgtaaccctttgttaagggctttggtgaaggaaggtgaaattgggaatgttgaatttgtttacagggagatgattaggaggagaattaggcccaatttgtacacgtttaatatggtgattaggggattgtgtaaagttgggaaattggaggaggcaaaggatgttattattaatgacatgaaggcttgggggatgtcaccaaatgtggttagttataatactttgatcgatgggtattgcaagttgggtgggttggggaagatgtacaaagctgatgcgattgtgaaggaaatgatggcaaatagtattcggccaaataagtgtacttacaatattttgattagtggctttggtaaagatgagaatgtaccggctgcggtcaaagtttttgaggcgataacaaagcaggatttgaaaccagatgagtttacatgttgttcactgattaatgggttgtgccgcattggtgagcttgacaaggcttgcgatttactgggggaaatgcgtggcttgggtttgaagccaaatgttattacgtacaatgcacttattaatgggttttgtaagaagaagatgatgaagagagctagagagttattcgatgacattggcagacaaggcttggagccgagtgttattacgtacaatacactaattgatgcttactccaaggatgggatgatggaggaagcatatgaggtgtataattcaatgttagagagaggagtttccccaaacacttcgaccttcaactgccggattgctggtttgtgcagacagggaaacatggagatggccatgaagcttttacatgaaatggaggttgatggcttgagagctgatcgcataacatataacacgttaatagatggattgtgcaaagaagggaagtcaagaaaggcaggaactctcttggatgagatgttcaagaagcgtttgagtccaaatcacttgacatacaattttttgatggatggatactgcagggaaggaaacctcagtgcagctttgaatctgagggcactgatggagaaaggagggaagcgaccaaatactgcaacatataatgcgttgatcaagggatattctaagaaggacaagcttgaagatgcgaatgggcttcttaatgaaatgttggagaaggggttggtcccaaaccaaactacttacgaaatagtgaaagaggaaatgatgaagaaaggttttgttcctgatatagattggcacctgtataatatctctagctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

594

Amino Acids

66.93

Weight (kDa)

9.1

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09820
fragaria_vesca	FvH4_1g12100 FvH4_6g07430
malus_domestica	MD02G1110600.v1.1
prunus_persica	Prupe.7G165800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099761 RchiOBHm_Chr3g0457031
rosa_laevigata	RLG00000016911 RLG00000025250
rosa_multiflora	Rmu_co8452377.1_g000001 Rmu_sc0000488.1_g000002 Rmu_sc0006209.1_g000003 Rmu_sc0008864.1_g000012
rosa_roxburghii	Rroxscaffold_2G00142790 Rroxscaffold_6G00422250
rosa_rugosa	Rorug02G0082800 Rorug03G0018700
rosa_samantha	Rh2AG132500 Rh2BG135300 Rh2CG136600 Rh2DG137100 Rh3AG078400
rosa_wichuraiana	Rw2G010250 Rw3G006730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	1758
AciI	CCGC	2 cut(s)	911, 994
AcoI	YGGCCR	2 cut(s)	845, 1329
AcsI	RAATTY	5 cut(s)	18, 367, 418, 460, 587
AfaI	GTAC	9 cut(s)	207, 221, 311, 635, 800, 859, 903, 1073, 1178
AfiI	CCNNNNNNNGG	1 cut(s)	1209
AflIII	ACRYGT	3 cut(s)	636, 965, 1392
AjuI	GAANNNNNNNTTGG	4 cut(s)	458, 490, 558, 590
AloI	GAACNNNNNNTCC	2 cut(s)	1442, 1474
Alw21I	GWGCWC	1 cut(s)	135
AoxI	GGCC	3 cut(s)	623, 845, 1329
ApeKI	GCWGC	4 cut(s)	251, 413, 908, 1538
ApoI	RAATTY	5 cut(s)	18, 367, 418, 460, 587
AseI	ATTAAT	3 cut(s)	705, 981, 1086
Asp700I	GAANNNNTTC	2 cut(s)	242, 489
AspS9I	GGNCC	2 cut(s)	624, 1684
AsuHPI	GGTGA	6 cut(s)	515, 571, 581, 661, 723, 1013
AvaII	GGWCC	1 cut(s)	1684
BaeGI	GKGCMC	1 cut(s)	1558
BaeI	ACNNNNGTAYC	2 cut(s)	203, 236
BalI	TGGCCA	1 cut(s)	1331
BanI	GGYRCC	1 cut(s)	1758
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	4 cut(s)	238, 400, 895, 1550
BciVI	GTATCC	1 cut(s)	1505
BclI	TGATCA	1 cut(s)	1608
BfaI	CTAG	2 cut(s)	1122, 1776
BfmI	CTRYAG	1 cut(s)	1516
BfuI	GTATCC	1 cut(s)	1505
BisI	GCNGC	5 cut(s)	252, 414, 909, 994, 1539
BlsI	GCNGC	5 cut(s)	253, 415, 910, 995, 1540
BmcAI	AGTACT	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	1684
BmgT120I	GGNCC	2 cut(s)	624, 1684
BmiI	GGNNCC	3 cut(s)	1161, 1686, 1760
BmrI	ACTGGG	2 cut(s)	197, 1037
BmsI	GCATC	4 cut(s)	13, 799, 1183, 1633
BmuI	ACTGGG	2 cut(s)	197, 1037
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	1387
Bsa29I	ATCGAT	1 cut(s)	762
BsaAI	YACGTR	2 cut(s)	1071, 1176
BsaJI	CCNNGG	1 cut(s)	1203
BsaXI	ACNNNNNCTCC	2 cut(s)	1664, 1694
Bsc4I	CCNNNNNNNGG	1 cut(s)	1209
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	3 cut(s)	99, 203, 1032
Bse3DI	GCAATG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	1 cut(s)	1203
BseGI	GGATG	7 cut(s)	4, 700, 732, 1213, 1218, 1456, 1513
BseLI	CCNNNNNNNGG	1 cut(s)	1209
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	5 cut(s)	148, 180, 229, 1541, 1546
BseNI	ACTGG	3 cut(s)	99, 203, 1032
BseRI	GAGGAG	3 cut(s)	628, 698, 1272
BseSI	GKGCMC	1 cut(s)	1558
BseXI	GCAGC	4 cut(s)	238, 400, 895, 1550
BsgI	GTGCAG	3 cut(s)	237, 1327, 1557
BshFI	GGCC	3 cut(s)	625, 847, 1331
BshNI	GGYRCC	1 cut(s)	1758
BshVI	ATCGAT	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	905, 1291
BslFI	GGGAC	1 cut(s)	1670
BslI	CCNNNNNNNGG	1 cut(s)	1209
BsmFI	GGGAC	1 cut(s)	1670
BsnI	GGCC	3 cut(s)	625, 847, 1331
Bsp1286I	GDGCHC	2 cut(s)	135, 1558
Bsp1407I	TGTACA	2 cut(s)	633, 798
Bsp143I	GATC	3 cut(s)	759, 1375, 1608
BspACI	CCGC	2 cut(s)	911, 994
BspANI	GGCC	3 cut(s)	625, 847, 1331
BspCNI	CTCAG	5 cut(s)	147, 179, 228, 1542, 1545
BspDI	ATCGAT	1 cut(s)	762
BspLI	GGNNCC	3 cut(s)	1161, 1686, 1760
BspMAI	CTGCAG	1 cut(s)	1520
BspT107I	GGYRCC	1 cut(s)	1758
BsrDI	GCAATG	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	904
BsrGI	TGTACA	2 cut(s)	633, 798
BsrI	ACTGG	3 cut(s)	99, 203, 1032
BssAI	RCCGGY	1 cut(s)	904
BssECI	CCNNGG	1 cut(s)	1203
BssMI	GATC	3 cut(s)	759, 1375, 1608
BssT1I	CCWWGG	1 cut(s)	1203
Bst6I	CTCTTC	1 cut(s)	1109
BstAUI	TGTACA	2 cut(s)	633, 798
BstBAI	YACGTR	2 cut(s)	1071, 1176
BstC8I	GCNNGC	1 cut(s)	1018
BstDEI	CTNAG	7 cut(s)	134, 166, 215, 1532, 1550, 1623, 1782
BstF5I	GGATG	7 cut(s)	4, 700, 732, 1213, 1218, 1456, 1513
BstKTI	GATC	3 cut(s)	762, 1378, 1611
BstMBI	GATC	3 cut(s)	759, 1375, 1608
BstMWI	GCNNNNNNNGC	1 cut(s)	1152
BstNSI	RCATGY	1 cut(s)	969
BstSFI	CTRYAG	1 cut(s)	1516
BstSLI	GKGCMC	1 cut(s)	1558
BstSNI	TACGTA	2 cut(s)	1071, 1176
BstV1I	GCAGC	4 cut(s)	238, 400, 895, 1550
BstV2I	GAAGAC	1 cut(s)	473
Bsu15I	ATCGAT	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	1505
BsuRI	GGCC	3 cut(s)	625, 847, 1331
BsuTUI	ATCGAT	1 cut(s)	762
BtsCI	GGATG	7 cut(s)	4, 700, 732, 1213, 1218, 1456, 1513
BtsIMutI	CAGTG	4 cut(s)	92, 974, 1540, 1556
Cac8I	GCNNGC	1 cut(s)	1018
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	2 cut(s)	624, 1684
ClaI	ATCGAT	1 cut(s)	762
Csp6I	GTAC	9 cut(s)	206, 220, 310, 634, 799, 858, 902, 1072, 1177
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	6 cut(s)	335, 712, 966, 1321, 1333, 1346
CviQI	GTAC	9 cut(s)	206, 220, 310, 634, 799, 858, 902, 1072, 1177
DdeI	CTNAG	7 cut(s)	134, 166, 215, 1532, 1550, 1623, 1782
DpnI	GATC	3 cut(s)	761, 1377, 1610
DpnII	GATC	3 cut(s)	759, 1375, 1608
EaeI	YGGCCR	2 cut(s)	845, 1329
Eam1104I	CTCTTC	1 cut(s)	1109
EarI	CTCTTC	1 cut(s)	1109
Ecl136II	GAGCTC	1 cut(s)	133
Eco105I	TACGTA	2 cut(s)	1071, 1176
Eco130I	CCWWGG	1 cut(s)	1203
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	1684
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	1203
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	1203
FaeI	CATG	6 cut(s)	338, 715, 969, 1324, 1336, 1349
FaqI	GGGAC	1 cut(s)	1670
FatI	CATG	6 cut(s)	334, 711, 965, 1320, 1332, 1345
FauNDI	CATATG	2 cut(s)	451, 1228
FbaI	TGATCA	1 cut(s)	1608
Fnu4HI	GCNGC	5 cut(s)	252, 414, 909, 994, 1539
FokI	GGATG	6 cut(s)	707, 739, 1220, 1225, 1463, 1520
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	252, 414, 909, 994, 1539
FspBI	CTAG	2 cut(s)	1122, 1776
GluI	GCNGC	5 cut(s)	252, 414, 909, 994, 1539
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	625, 847, 1331
HapII	CCGG	2 cut(s)	905, 1291
Hin1II	CATG	6 cut(s)	338, 715, 969, 1324, 1336, 1349
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	2 cut(s)	1337, 1634
HinfI	GANTC	7 cut(s)	49, 85, 152, 188, 279, 1474, 1546
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	905, 1291
HphI	GGTGA	6 cut(s)	515, 571, 581, 661, 723, 1013
Hpy166II	GTNNAC	7 cut(s)	404, 433, 595, 636, 858, 963, 974
Hpy188I	TCNGA	7 cut(s)	76, 103, 130, 137, 157, 495, 1551
Hpy188III	TCNNGA	5 cut(s)	192, 263, 1428, 1462, 1745
Hpy8I	GTNNAC	7 cut(s)	404, 433, 595, 636, 858, 963, 974
HpyCH4IV	ACGT	4 cut(s)	638, 1070, 1175, 1394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1152
HpyF3I	CTNAG	7 cut(s)	134, 166, 215, 1532, 1550, 1623, 1782
HpySE526I	ACGT	4 cut(s)	638, 1070, 1175, 1394
Hsp92II	CATG	6 cut(s)	338, 715, 969, 1324, 1336, 1349
Ksp22I	TGATCA	1 cut(s)	1608
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	759, 1375, 1608
LmnI	GCTCC	2 cut(s)	194, 1159
Lsp1109I	GCAGC	4 cut(s)	238, 400, 895, 1550
LweI	GCATC	4 cut(s)	13, 799, 1183, 1633
MaeI	CTAG	2 cut(s)	1122, 1776
MaeII	ACGT	4 cut(s)	638, 1070, 1175, 1394
MaeIII	GTNAC	2 cut(s)	536, 729
MalI	GATC	3 cut(s)	761, 1377, 1610
MboI	GATC	3 cut(s)	759, 1375, 1608
MboII	GAAGA	8 cut(s)	80, 478, 805, 1114, 1117, 1126, 1652, 1741
MhlI	GDGCHC	2 cut(s)	135, 1558
MlsI	TGGCCA	1 cut(s)	1331
MluNI	TGGCCA	1 cut(s)	1331
MlyI	GAGTC	4 cut(s)	43, 146, 273, 1483
MmeI	TCCRAC	1 cut(s)	1650
Mox20I	TGGCCA	1 cut(s)	1331
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	242, 489
MscI	TGGCCA	1 cut(s)	1331
MslI	CAYNNNNRTG	2 cut(s)	477, 1325
Msp20I	TGGCCA	1 cut(s)	1331
MspI	CCGG	2 cut(s)	905, 1291
MwoI	GCNNNNNNNGC	1 cut(s)	1152
NdeI	CATATG	2 cut(s)	451, 1228
NdeII	GATC	3 cut(s)	759, 1375, 1608
NlaIII	CATG	6 cut(s)	338, 715, 969, 1324, 1336, 1349
NlaIV	GGNNCC	3 cut(s)	1161, 1686, 1760
NmeAIII	GCCGAG	1 cut(s)	1188
NmuCI	GTSAC	1 cut(s)	729
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	969
PciI	ACATGT	1 cut(s)	965
PdmI	GAANNNNTTC	2 cut(s)	242, 489
PfeI	GAWTC	3 cut(s)	85, 188, 1546
PkrI	GCNGC	5 cut(s)	253, 415, 910, 995, 1540
PleI	GAGTC	4 cut(s)	43, 146, 273, 1482
PpsI	GAGTC	4 cut(s)	43, 146, 273, 1482
Ppu21I	YACGTR	2 cut(s)	1071, 1176
PscI	ACATGT	1 cut(s)	965
PshBI	ATTAAT	3 cut(s)	705, 981, 1086
PsiI	TTATAA	1 cut(s)	750
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	3 cut(s)	1161, 1686, 1760
PspPI	GGNCC	2 cut(s)	624, 1684
PstI	CTGCAG	1 cut(s)	1520
RsaI	GTAC	9 cut(s)	207, 221, 311, 635, 800, 859, 903, 1073, 1178
RsaNI	GTAC	9 cut(s)	206, 220, 310, 634, 799, 858, 902, 1072, 1177
RseI	CAYNNNNRTG	2 cut(s)	477, 1325
SacI	GAGCTC	1 cut(s)	135
SatI	GCNGC	5 cut(s)	252, 414, 909, 994, 1539
Sau3AI	GATC	3 cut(s)	759, 1375, 1608
Sau96I	GGNCC	2 cut(s)	624, 1684
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	4 cut(s)	43, 146, 273, 1483
SduI	GDGCHC	2 cut(s)	135, 1558
SfaNI	GCATC	4 cut(s)	13, 799, 1183, 1633
SfcI	CTRYAG	1 cut(s)	1516
SinI	GGWCC	1 cut(s)	1684
SmiMI	CAYNNNNRTG	2 cut(s)	477, 1325
SmlI	CTYRAG	1 cut(s)	1366
SmoI	CTYRAG	1 cut(s)	1366
SnaBI	TACGTA	2 cut(s)	1071, 1176
SsiI	CCGC	2 cut(s)	911, 994
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	2 cut(s)	1122, 1776
SstI	GAGCTC	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	1203
TaiI	ACGT	4 cut(s)	641, 1073, 1178, 1397
TaqI	TCGA	3 cut(s)	762, 1134, 1277
TatI	WGTACW	4 cut(s)	205, 633, 798, 857
TauI	GCSGC	1 cut(s)	996
TfiI	GAWTC	3 cut(s)	85, 188, 1546
TscAI	CASTG	4 cut(s)	99, 981, 1540, 1563
TseFI	GTSAC	1 cut(s)	729
TseI	GCWGC	4 cut(s)	251, 413, 908, 1538
Tsp45I	GTSAC	1 cut(s)	729
TspDTI	ATGAA	9 cut(s)	164, 279, 369, 728, 1127, 1349, 1362, 1677, 1742
TspRI	CASTG	4 cut(s)	99, 981, 1540, 1563
VpaK11BI	GGWCC	1 cut(s)	1684
VspI	ATTAAT	3 cut(s)	705, 981, 1086
XapI	RAATTY	5 cut(s)	18, 367, 418, 460, 587
XceI	RCATGY	1 cut(s)	969
XmnI	GAANNNNTTC	2 cut(s)	242, 489
XspI	CTAG	2 cut(s)	1122, 1776
ZrmI	AGTACT	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.