Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452377.1

Orthogroup ID

OG0008008

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1677

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452377.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

ctcatagcaaagcaacactggtcagagctcaaaacccatctcaaagactcaacctttatcacagttcttcaccaactgatcgattctggagctgacccagagctcacactcaggtacttcaattgggcccagaagggtcaaaatgttccacacaatattgaaatcacttgtagactattgcagtcactttcaaatgcaaagaagtacccaaagatgagagctttcttagatgaatttgttagaaggaatgagaagcattcagtttcttcaatttttcatatgctttcaatgtctagcaatcacttttgtgctaattccattatagttgatatgctggtgttggcttatgttaagaattcgaagaccaattcgggttttgaggcgtttcagagagctggtgattatgggtttaggctgtcaaaactgtcttgtaatgctttgttgagtgctttggtgaaggaaaatgaaattgggtatgttgagtttgtgtacaaggagatgtttaggaggaggatagaggcggatttgtatagtttcaatattgtgattaatgggttgtgtaaagttgggaaattgaacaaggcaaaggatgttatggatgatatgaaggcttggggggttgcaccaaatgtggttacttataatactgtcattggtgggtattgcaaattgggtgggttggggaaaatgcataaggctgatgccatattgaaggagatggtggcgaacaatatttgtccgagtgtgatcacgttcaatattttgattgatgggttctgtaaagatgagaatgtagcagctgcgtttaaggtgtttgaggaaatgaggaggcagggcttgaaacctaatttggttacttataattcactgattaatgggttatgctgtgatgggaagcttgaggaggcttgtggattgcgggacgaaatgcttggattgggtttgaagccagagatagcaacctacaatgcacttataaatgggttttgcaagaagaaaatgctgaaggaagctagagagctgtttgatagcatttgtgagcgaggcttggtaaccaatgttataacatttaattcactaattgatgcttattgtaagaatgagatgaaggaggaagcatatgaattgcatagcatgatgatagagagaggggttttaccaaacacgtcaacatttaactgcttgattcatggttctcttagacagggaaacatagaaacagccaggacattcttacaacaaatggaggctgagggcttgaaagctgattgcataacatatgatatactgataaatgcattatgtaaagatggggagccaagaaaggcagaaagactcctgaatgagatgttcactaagggtctgagcccaaggcacgtgacatacaatactttgatggatggctactgcagggaaggaaacctgaaggcagctttgaacttgaggactcggatggagaaagaagggaaacgagcaaatatagcaacatacaatgtgctgatcaagggatattgtatgcaggacaagcttgtagatgcaaatgtacttctaaatgaaatgttggagaaaggtttgatcccaaatcgaactacttatgaaatagttaaagtggaaatgatggacaaaggttttgttcctgatatagatggacacctgcataatatctctagctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

558

Amino Acids

63.07

Weight (kDa)

8.29

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09820
fragaria_vesca	FvH4_1g12100 FvH4_6g07430
malus_domestica	MD02G1110600.v1.1
prunus_persica	Prupe.7G165800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099761 RchiOBHm_Chr3g0457031
rosa_laevigata	RLG00000016911 RLG00000025250
rosa_multiflora	Rmu_co8452377.1_g000001 Rmu_sc0000488.1_g000002 Rmu_sc0006209.1_g000003 Rmu_sc0008864.1_g000012
rosa_roxburghii	Rroxscaffold_2G00142790 Rroxscaffold_6G00422250
rosa_rugosa	Rorug02G0082800 Rorug03G0018700
rosa_samantha	Rh2AG132500 Rh2BG135300 Rh2CG136600 Rh2DG137100 Rh3AG078400
rosa_wichuraiana	Rw2G010250 Rw3G006730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	642, 861, 977, 1064
AarI	CACCTGC	1 cut(s)	1662
Acc36I	ACCTGC	1 cut(s)	1662
AccI	GTMKAC	1 cut(s)	172
AciI	CCGC	2 cut(s)	521, 919
AclWI	GGATC	1 cut(s)	1570
AcsI	RAATTY	2 cut(s)	233, 355
AcuI	CTGAAG	2 cut(s)	1025, 1445
AcvI	CACGTG	1 cut(s)	1378
AfaI	GTAC	4 cut(s)	116, 206, 491, 1545
AflIII	ACRYGT	1 cut(s)	1164
AjiI	CACGTC	1 cut(s)	1167
AjnI	CCWGG	1 cut(s)	1223
AjuI	GAANNNNNNNTTGG	4 cut(s)	453, 485, 833, 865
AleI	CACNNNNGTG	1 cut(s)	306
Alw21I	GWGCWC	2 cut(s)	30, 105
AlwI	GGATC	1 cut(s)	1570
AoxI	GGCC	1 cut(s)	126
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	797, 800, 1430
ApoI	RAATTY	2 cut(s)	233, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	1613, 1645
AseI	ATTAAT	2 cut(s)	549, 873
AspS9I	GGNCC	2 cut(s)	126, 127
AsuHPI	GGTGA	3 cut(s)	62, 410, 466
AsuII	TTCGAA	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	4 cut(s)	30, 105, 130, 1370
BbrPI	CACGTG	1 cut(s)	1378
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	2 cut(s)	30, 105
BbvCI	CCTCAGC	1 cut(s)	1251
BbvI	GCAGC	3 cut(s)	787, 809, 1442
BciT130I	CCWGG	1 cut(s)	1225
BclI	TGATCA	2 cut(s)	747, 1500
BfaI	CTAG	3 cut(s)	294, 1014, 1668
BfmI	CTRYAG	1 cut(s)	1408
BfuAI	ACCTGC	1 cut(s)	1662
BisI	GCNGC	3 cut(s)	798, 801, 1431
BlsI	GCNGC	3 cut(s)	799, 802, 1432
Bme1390I	CCNGG	1 cut(s)	1225
BmgBI	CACGTC	1 cut(s)	1167
BmgT120I	GGNCC	2 cut(s)	126, 127
BmiI	GGNNCC	2 cut(s)	128, 1317
BmrFI	CCNGG	1 cut(s)	1225
BmsI	GCATC	3 cut(s)	691, 1075, 1525
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	1251
Bpu14I	TTCGAA	1 cut(s)	359
BpuEI	CTTGAG	2 cut(s)	920, 1462
Bsa29I	ATCGAT	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	1378
BsaJI	CCNNGG	1 cut(s)	1370
Bse1I	ACTGG	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	1225
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	1370
BseGI	GGATG	4 cut(s)	595, 604, 1405, 1458
BseMII	CTCAG	3 cut(s)	124, 1242, 1355
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	3 cut(s)	523, 841, 917
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	787, 809, 1442
BshFI	GGCC	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	2 cut(s)	30, 105
BslFI	GGGAC	1 cut(s)	935
BsmFI	GGGAC	1 cut(s)	935
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	359
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	4 cut(s)	30, 105, 130, 1370
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	4 cut(s)	78, 747, 1500, 1575
BspACI	CCGC	2 cut(s)	521, 919
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	3 cut(s)	123, 1243, 1356
BspDI	ATCGAT	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	128, 1317
BspMAI	CTGCAG	1 cut(s)	1412
BspMI	ACCTGC	1 cut(s)	1662
BspPI	GGATC	1 cut(s)	1570
BspT104I	TTCGAA	1 cut(s)	359
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	1370
BssMI	GATC	4 cut(s)	78, 747, 1500, 1575
BssT1I	CCWWGG	1 cut(s)	1370
Bst2UI	CCWGG	1 cut(s)	1225
Bst4CI	ACNGT	3 cut(s)	64, 426, 649
BstAUI	TGTACA	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	1378
BstBI	TTCGAA	1 cut(s)	359
BstDEI	CTNAG	6 cut(s)	110, 226, 1199, 1251, 1356, 1364
BstEII	GGTNACC	1 cut(s)	1051
BstF5I	GGATG	4 cut(s)	595, 604, 1405, 1458
BstKTI	GATC	4 cut(s)	81, 750, 1503, 1578
BstMBI	GATC	4 cut(s)	78, 747, 1500, 1575
BstMWI	GCNNNNNNNGC	2 cut(s)	1481, 1525
BstNI	CCWGG	1 cut(s)	1225
BstPI	GGTNACC	1 cut(s)	1051
BstSCI	CCNGG	1 cut(s)	1223
BstSFI	CTRYAG	1 cut(s)	1408
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	787, 809, 1442
BstV2I	GAAGAC	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	1167
BtsCI	GGATG	4 cut(s)	595, 604, 1405, 1458
BtsIMutI	CAGTG	2 cut(s)	16, 866
BveI	ACCTGC	1 cut(s)	1662
Cfr13I	GGNCC	2 cut(s)	126, 127
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	115, 205, 490, 1544
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	2 cut(s)	1135, 1190
CviQI	GTAC	4 cut(s)	115, 205, 490, 1544
DdeI	CTNAG	6 cut(s)	110, 226, 1199, 1251, 1356, 1364
DpnI	GATC	4 cut(s)	80, 749, 1502, 1577
DpnII	GATC	4 cut(s)	78, 747, 1500, 1575
EciI	GGCGGA	1 cut(s)	536
Ecl136II	GAGCTC	2 cut(s)	28, 103
Eco130I	CCWWGG	1 cut(s)	1370
Eco24I	GRGCYC	4 cut(s)	30, 105, 130, 1370
Eco53kI	GAGCTC	2 cut(s)	28, 103
Eco57I	CTGAAG	2 cut(s)	1025, 1445
Eco72I	CACGTG	1 cut(s)	1378
Eco91I	GGTNACC	1 cut(s)	1051
EcoICRI	GAGCTC	2 cut(s)	28, 103
EcoO65I	GGTNACC	1 cut(s)	1051
EcoRI	GAATTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	1223
EcoT14I	CCWWGG	1 cut(s)	1370
EcoT22I	ATGCAT	2 cut(s)	693, 1300
EcoT38I	GRGCYC	4 cut(s)	30, 105, 130, 1370
ErhI	CCWWGG	1 cut(s)	1370
FaeI	CATG	2 cut(s)	1138, 1193
FaqI	GGGAC	1 cut(s)	935
FatI	CATG	2 cut(s)	1134, 1189
FauI	CCCGC	1 cut(s)	912
FauNDI	CATATG	3 cut(s)	279, 1120, 1279
FbaI	TGATCA	2 cut(s)	747, 1500
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	3 cut(s)	798, 801, 1431
FokI	GGATG	4 cut(s)	602, 611, 1412, 1465
FriOI	GRGCYC	4 cut(s)	30, 105, 130, 1370
Fsp4HI	GCNGC	3 cut(s)	798, 801, 1431
FspBI	CTAG	3 cut(s)	294, 1014, 1668
GluI	GCNGC	3 cut(s)	798, 801, 1431
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	2 cut(s)	1138, 1193
HincII	GTYRAC	1 cut(s)	1170
HindII	GTYRAC	1 cut(s)	1170
HindIII	AAGCTT	2 cut(s)	896, 1526
HinfI	GANTC	5 cut(s)	47, 83, 1186, 1335, 1447
HphI	GGTGA	3 cut(s)	62, 410, 466
Hpy166II	GTNNAC	4 cut(s)	173, 490, 1170, 1353
Hpy188I	TCNGA	5 cut(s)	25, 390, 741, 1365, 1452
Hpy188III	TCNNGA	3 cut(s)	87, 1339, 1637
Hpy8I	GTNNAC	4 cut(s)	173, 490, 1170, 1353
HpyCH4III	ACNGT	3 cut(s)	64, 426, 649
HpyCH4IV	ACGT	3 cut(s)	752, 1166, 1377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1481, 1525
HpyF3I	CTNAG	6 cut(s)	110, 226, 1199, 1251, 1356, 1364
HpySE526I	ACGT	3 cut(s)	752, 1166, 1377
Hsp92II	CATG	2 cut(s)	1138, 1193
Ksp22I	TGATCA	2 cut(s)	747, 1500
Kzo9I	GATC	4 cut(s)	78, 747, 1500, 1575
LmnI	GCTCC	2 cut(s)	89, 1315
Lsp1109I	GCAGC	3 cut(s)	787, 809, 1442
LweI	GCATC	3 cut(s)	691, 1075, 1525
MaeI	CTAG	3 cut(s)	294, 1014, 1668
MaeII	ACGT	3 cut(s)	752, 1166, 1377
MaeIII	GTNAC	5 cut(s)	183, 634, 853, 1051, 1378
MalI	GATC	4 cut(s)	80, 749, 1502, 1577
MboI	GATC	4 cut(s)	78, 747, 1500, 1575
MboII	GAAGA	4 cut(s)	59, 258, 373, 1006
MfeI	CAATTG	1 cut(s)	121
MhlI	GDGCHC	4 cut(s)	30, 105, 130, 1370
MlyI	GAGTC	3 cut(s)	41, 1329, 1441
MmeI	TCCRAC	1 cut(s)	1542
Mph1103I	ATGCAT	2 cut(s)	693, 1300
MseI	TTAA	8 cut(s)	351, 549, 807, 873, 1071, 1176, 1605, 1675
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	800
MspR9I	CCNGG	1 cut(s)	1225
MunI	CAATTG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	1225
MwoI	GCNNNNNNNGC	2 cut(s)	1481, 1525
NdeI	CATATG	3 cut(s)	279, 1120, 1279
NdeII	GATC	4 cut(s)	78, 747, 1500, 1575
NlaIII	CATG	2 cut(s)	1138, 1193
NlaIV	GGNNCC	2 cut(s)	128, 1317
NmuCI	GTSAC	2 cut(s)	183, 1378
NsiI	ATGCAT	2 cut(s)	693, 1300
NspV	TTCGAA	1 cut(s)	359
OliI	CACNNNNGTG	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	1662
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	83, 1186
PkrI	GCNGC	3 cut(s)	799, 802, 1432
PleI	GAGTC	3 cut(s)	41, 1329, 1441
PmaCI	CACGTG	1 cut(s)	1378
PmlI	CACGTG	1 cut(s)	1378
PpsI	GAGTC	3 cut(s)	41, 1329, 1441
Ppu21I	YACGTR	1 cut(s)	1378
PshBI	ATTAAT	2 cut(s)	549, 873
PsiI	TTATAA	4 cut(s)	642, 861, 977, 1064
Psp124BI	GAGCTC	2 cut(s)	30, 105
Psp6I	CCWGG	1 cut(s)	1223
PspCI	CACGTG	1 cut(s)	1378
PspEI	GGTNACC	1 cut(s)	1051
PspGI	CCWGG	1 cut(s)	1223
PspN4I	GGNNCC	2 cut(s)	128, 1317
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	126, 127
PstI	CTGCAG	1 cut(s)	1412
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	4 cut(s)	116, 206, 491, 1545
RsaNI	GTAC	4 cut(s)	115, 205, 490, 1544
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	2 cut(s)	30, 105
SaqAI	TTAA	8 cut(s)	351, 549, 807, 873, 1071, 1176, 1605, 1675
SatI	GCNGC	3 cut(s)	798, 801, 1431
Sau3AI	GATC	4 cut(s)	78, 747, 1500, 1575
Sau96I	GGNCC	2 cut(s)	126, 127
SchI	GAGTC	3 cut(s)	41, 1329, 1441
ScrFI	CCNGG	1 cut(s)	1225
SduI	GDGCHC	4 cut(s)	30, 105, 130, 1370
SfaNI	GCATC	3 cut(s)	691, 1075, 1525
SfcI	CTRYAG	1 cut(s)	1408
SfuI	TTCGAA	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	899, 1441
SmoI	CTYRAG	2 cut(s)	899, 1441
SsiI	CCGC	2 cut(s)	521, 919
SspI	AATATT	4 cut(s)	157, 541, 733, 760
SspMI	CTAG	3 cut(s)	294, 1014, 1668
SstI	GAGCTC	2 cut(s)	30, 105
StyD4I	CCNGG	1 cut(s)	1223
StyI	CCWWGG	1 cut(s)	1370
TaaI	ACNGT	3 cut(s)	64, 426, 649
TaiI	ACGT	3 cut(s)	755, 1169, 1380
TaqI	TCGA	3 cut(s)	81, 359, 1585
TatI	WGTACW	2 cut(s)	489, 1543
TfiI	GAWTC	2 cut(s)	83, 1186
Tru1I	TTAA	8 cut(s)	351, 549, 807, 873, 1071, 1176, 1605, 1675
Tru9I	TTAA	8 cut(s)	351, 549, 807, 873, 1071, 1176, 1605, 1675
TscAI	CASTG	2 cut(s)	23, 873
TseFI	GTSAC	2 cut(s)	183, 1378
TseI	GCWGC	3 cut(s)	797, 800, 1430
Tsp45I	GTSAC	2 cut(s)	183, 1378
TspDTI	ATGAA	9 cut(s)	246, 266, 480, 620, 1121, 1137, 1178, 1569, 1611
TspRI	CASTG	2 cut(s)	23, 873
VspI	ATTAAT	2 cut(s)	549, 873
XapI	RAATTY	2 cut(s)	233, 355
XmiI	GTMKAC	1 cut(s)	172
XspI	CTAG	3 cut(s)	294, 1014, 1668
Zsp2I	ATGCAT	2 cut(s)	693, 1300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.