Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008864.1

Orthogroup ID

OG0008008

Physical Location & Seq

Genomic Coordinates Forward (+)

78524 .. 80353

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008864.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

atgctaaagctcctctcctcctcctcatcatgcctccacgctcgagcccacattcagcagcacccccaaatcaacagaatcaaactctgttccacaatctccatctccgaaaatccaagctcacagtccttcaatcttccattagtttcagacctcatagcaaagcaacactggtcagagctcaaaacccatctcaaagactcaacctttatcacagttcttcaccaactgatcgattctggagctgaccctgagctcacactcaggtacttcaattgggcccagaagggtcaaaatgttccacacaatattgaaatcacttgtagactattgcagtcactttcaaatgcaaagaagtacccaaagatgagagctttcttagatgaatttgttagaaggaatgagaagcattcagtttcttcaatttttcatatgctttcaatgtctagcaatcacttttgtgctaattccattatagttgatatgctggtgttggcttatgttaagaattcgaagaccaattcgggttttgaggcgtttcagagagctggtgattatgggtttaggctgtcaaaactgtcttgtaatgctttgttgagtgctttggtgaaggaaaatgaaattgggtatgttgagtttgtgtacaaggagatgtttaggaggaggatagaggcggatttgtatagtttcaatattgtgattaatgggttgtgtaaagttgggaaattgaacaaggcaaaggatgttatggatgatatgaaggcttggggggttgcaccaaatgtggttacttataatactgtcattggtgggtattgcaaattgggtgggttggggaaaatgcataaggctgatgccatattgaaggagatggtggcgaacaatatttgtccgagtgtgatcacattcaatattttgattgatgggttctgtaaagatgagaatgtagcagctgcgtttaaggtgtttgaggaaatgaggaggcagggcttgaaacctaatttggttacttataattcactgattaatgggttatgctgtgatgggaagcttgaggaggcttgtggattgcgggacgaaatgcttggattgggtttgaagccagagatagcaacctacaatgcacttataaatgggttttgcaagaagaaaatgctgaaggaagctagagagctgtttgatagcatttgtgagcgaggcttggtaaccaatgttataacatttaattcactaattgatgcttattgtaagaatgagatgaaggaggaagcatatgaattgcatagcatgatgatagagagaggggttttaccaaacacgtcaacatttaactgcttgattcatggttctcttagacagggaaacatagaaacagccaggacattcttacaacaaatggaggctgagggcttgaaagctgattgcataacatatgatatactgataaatgcattatgtaaagatggggagccaagaaaggcagaaagactcctgaatgagatgttcactaagggtctgagcccaaggcacgtgacatacaatactttgatggatggctactgcagggaaggaaacctgaaggcagctttgaacttgaggactcggatggagaaagaagggaaacgagcaaatatagcaacatacaatgtgctgatcaagggatattgtatgcaggacaagcttgtagatgcaaatgtacttctaaatgaaatgttggagaaaggtttgatcccaaatcgaactacttatgaaatagttaaagtggaaatgatggacaaaggttttgttcctgatatagatggacacctgcataatatctctagctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

609

Amino Acids

68.67

Weight (kDa)

8.44

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09820
fragaria_vesca	FvH4_1g12100 FvH4_6g07430
malus_domestica	MD02G1110600.v1.1
prunus_persica	Prupe.7G165800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099761 RchiOBHm_Chr3g0457031
rosa_laevigata	RLG00000016911 RLG00000025250
rosa_multiflora	Rmu_co8452377.1_g000001 Rmu_sc0000488.1_g000002 Rmu_sc0006209.1_g000003 Rmu_sc0008864.1_g000012
rosa_roxburghii	Rroxscaffold_2G00142790 Rroxscaffold_6G00422250
rosa_rugosa	Rorug02G0082800 Rorug03G0018700
rosa_samantha	Rh2AG132500 Rh2BG135300 Rh2CG136600 Rh2DG137100 Rh3AG078400
rosa_wichuraiana	Rw2G010250 Rw3G006730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	795, 1014, 1130, 1217
AarI	CACCTGC	1 cut(s)	1815
Acc36I	ACCTGC	1 cut(s)	1815
AccI	GTMKAC	1 cut(s)	325
AciI	CCGC	2 cut(s)	674, 1072
AclWI	GGATC	1 cut(s)	1723
AcsI	RAATTY	2 cut(s)	386, 508
AcuI	CTGAAG	2 cut(s)	1178, 1598
AcvI	CACGTG	1 cut(s)	1531
AfaI	GTAC	4 cut(s)	269, 359, 644, 1698
AflIII	ACRYGT	1 cut(s)	1317
AjiI	CACGTC	1 cut(s)	1320
AjnI	CCWGG	1 cut(s)	1376
AjuI	GAANNNNNNNTTGG	4 cut(s)	606, 638, 986, 1018
AleI	CACNNNNGTG	1 cut(s)	459
Alw21I	GWGCWC	2 cut(s)	183, 258
AlwI	GGATC	1 cut(s)	1723
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	1 cut(s)	279
ApaI	GGGCCC	1 cut(s)	283
ApeKI	GCWGC	4 cut(s)	58, 950, 953, 1583
ApoI	RAATTY	2 cut(s)	386, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	1766, 1798
AseI	ATTAAT	2 cut(s)	702, 1026
AspS9I	GGNCC	2 cut(s)	279, 280
AsuHPI	GGTGA	3 cut(s)	215, 563, 619
AsuII	TTCGAA	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	283
BanII	GRGCYC	5 cut(s)	49, 183, 258, 283, 1523
BbrPI	CACGTG	1 cut(s)	1531
BbsI	GAAGAC	1 cut(s)	521
Bbv12I	GWGCWC	2 cut(s)	183, 258
BbvCI	CCTCAGC	1 cut(s)	1404
BbvI	GCAGC	4 cut(s)	70, 940, 962, 1595
BciT130I	CCWGG	1 cut(s)	1378
BclI	TGATCA	2 cut(s)	900, 1653
BfaI	CTAG	3 cut(s)	447, 1167, 1821
BfmI	CTRYAG	1 cut(s)	1561
BfuAI	ACCTGC	1 cut(s)	1815
BisI	GCNGC	4 cut(s)	59, 951, 954, 1584
BlsI	GCNGC	4 cut(s)	60, 952, 955, 1585
Bme1390I	CCNGG	1 cut(s)	1378
BmeT110I	CYCGRG	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	1320
BmgT120I	GGNCC	2 cut(s)	279, 280
BmiI	GGNNCC	2 cut(s)	281, 1470
BmrFI	CCNGG	1 cut(s)	1378
BmsI	GCATC	3 cut(s)	844, 1228, 1678
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	2 cut(s)	252, 1404
Bpu14I	TTCGAA	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	1073, 1615
Bsa29I	ATCGAT	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	1531
BsaJI	CCNNGG	1 cut(s)	1523
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	1378
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	1523
BseGI	GGATG	4 cut(s)	748, 757, 1558, 1611
BseMII	CTCAG	4 cut(s)	243, 277, 1395, 1508
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	6 cut(s)	7, 10, 13, 676, 994, 1070
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	4 cut(s)	70, 940, 962, 1595
BshFI	GGCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	2 cut(s)	183, 258
BsiHKCI	CYCGRG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	1088
BsmFI	GGGAC	1 cut(s)	1088
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	512
Bsp120I	GGGCCC	1 cut(s)	279
Bsp1286I	GDGCHC	5 cut(s)	49, 183, 258, 283, 1523
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	4 cut(s)	231, 900, 1653, 1728
BspACI	CCGC	2 cut(s)	674, 1072
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	4 cut(s)	244, 276, 1396, 1509
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	281, 1470
BspMAI	CTGCAG	1 cut(s)	1565
BspMI	ACCTGC	1 cut(s)	1815
BspPI	GGATC	1 cut(s)	1723
BspT104I	TTCGAA	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	1523
BssMI	GATC	4 cut(s)	231, 900, 1653, 1728
BssT1I	CCWWGG	1 cut(s)	1523
Bst2UI	CCWGG	1 cut(s)	1378
Bst4CI	ACNGT	4 cut(s)	126, 217, 579, 802
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	1 cut(s)	1531
BstBI	TTCGAA	1 cut(s)	512
BstDEI	CTNAG	7 cut(s)	252, 263, 379, 1352, 1404, 1509, 1517
BstEII	GGTNACC	1 cut(s)	1204
BstF5I	GGATG	4 cut(s)	748, 757, 1558, 1611
BstKTI	GATC	4 cut(s)	234, 903, 1656, 1731
BstMBI	GATC	4 cut(s)	231, 900, 1653, 1728
BstMWI	GCNNNNNNNGC	2 cut(s)	1634, 1678
BstNI	CCWGG	1 cut(s)	1378
BstPI	GGTNACC	1 cut(s)	1204
BstSCI	CCNGG	1 cut(s)	1376
BstSFI	CTRYAG	1 cut(s)	1561
BstSLI	GKGCMC	1 cut(s)	283
BstV1I	GCAGC	4 cut(s)	70, 940, 962, 1595
BstV2I	GAAGAC	1 cut(s)	521
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	1320
BtsCI	GGATG	4 cut(s)	748, 757, 1558, 1611
BtsIMutI	CAGTG	2 cut(s)	169, 1019
BveI	ACCTGC	1 cut(s)	1815
Cfr13I	GGNCC	2 cut(s)	279, 280
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	4 cut(s)	268, 358, 643, 1697
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	3 cut(s)	30, 1288, 1343
CviQI	GTAC	4 cut(s)	268, 358, 643, 1697
DdeI	CTNAG	7 cut(s)	252, 263, 379, 1352, 1404, 1509, 1517
DpnI	GATC	4 cut(s)	233, 902, 1655, 1730
DpnII	GATC	4 cut(s)	231, 900, 1653, 1728
EciI	GGCGGA	1 cut(s)	689
Ecl136II	GAGCTC	2 cut(s)	181, 256
Eco130I	CCWWGG	1 cut(s)	1523
Eco24I	GRGCYC	5 cut(s)	49, 183, 258, 283, 1523
Eco53kI	GAGCTC	2 cut(s)	181, 256
Eco57I	CTGAAG	2 cut(s)	1178, 1598
Eco72I	CACGTG	1 cut(s)	1531
Eco88I	CYCGRG	1 cut(s)	42
Eco91I	GGTNACC	1 cut(s)	1204
EcoICRI	GAGCTC	2 cut(s)	181, 256
EcoO65I	GGTNACC	1 cut(s)	1204
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	1 cut(s)	1376
EcoT14I	CCWWGG	1 cut(s)	1523
EcoT22I	ATGCAT	2 cut(s)	846, 1453
EcoT38I	GRGCYC	5 cut(s)	49, 183, 258, 283, 1523
ErhI	CCWWGG	1 cut(s)	1523
FaeI	CATG	3 cut(s)	33, 1291, 1346
FaqI	GGGAC	1 cut(s)	1088
FatI	CATG	3 cut(s)	29, 1287, 1342
FauI	CCCGC	1 cut(s)	1065
FauNDI	CATATG	3 cut(s)	432, 1273, 1432
FbaI	TGATCA	2 cut(s)	900, 1653
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	59, 951, 954, 1584
FokI	GGATG	4 cut(s)	755, 764, 1565, 1618
FriOI	GRGCYC	5 cut(s)	49, 183, 258, 283, 1523
Fsp4HI	GCNGC	4 cut(s)	59, 951, 954, 1584
FspBI	CTAG	3 cut(s)	447, 1167, 1821
GluI	GCNGC	4 cut(s)	59, 951, 954, 1584
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	281
Hin1II	CATG	3 cut(s)	33, 1291, 1346
HincII	GTYRAC	1 cut(s)	1323
HindII	GTYRAC	1 cut(s)	1323
HindIII	AAGCTT	2 cut(s)	1049, 1679
HinfI	GANTC	6 cut(s)	78, 200, 236, 1339, 1488, 1600
HphI	GGTGA	3 cut(s)	215, 563, 619
Hpy166II	GTNNAC	4 cut(s)	326, 643, 1323, 1506
Hpy188I	TCNGA	7 cut(s)	109, 151, 178, 543, 894, 1518, 1605
Hpy188III	TCNNGA	3 cut(s)	240, 1492, 1790
Hpy8I	GTNNAC	4 cut(s)	326, 643, 1323, 1506
HpyCH4III	ACNGT	4 cut(s)	126, 217, 579, 802
HpyCH4IV	ACGT	2 cut(s)	1319, 1530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1634, 1678
HpyF3I	CTNAG	7 cut(s)	252, 263, 379, 1352, 1404, 1509, 1517
HpySE526I	ACGT	2 cut(s)	1319, 1530
Hsp92II	CATG	3 cut(s)	33, 1291, 1346
Ksp22I	TGATCA	2 cut(s)	900, 1653
Kzo9I	GATC	4 cut(s)	231, 900, 1653, 1728
LmnI	GCTCC	3 cut(s)	15, 242, 1468
Lsp1109I	GCAGC	4 cut(s)	70, 940, 962, 1595
LweI	GCATC	3 cut(s)	844, 1228, 1678
MaeI	CTAG	3 cut(s)	447, 1167, 1821
MaeII	ACGT	2 cut(s)	1319, 1530
MaeIII	GTNAC	5 cut(s)	336, 787, 1006, 1204, 1531
MalI	GATC	4 cut(s)	233, 902, 1655, 1730
MboI	GATC	4 cut(s)	231, 900, 1653, 1728
MboII	GAAGA	5 cut(s)	128, 212, 411, 526, 1159
MfeI	CAATTG	1 cut(s)	274
MhlI	GDGCHC	5 cut(s)	49, 183, 258, 283, 1523
MlyI	GAGTC	3 cut(s)	194, 1482, 1594
MmeI	TCCRAC	1 cut(s)	1695
Mph1103I	ATGCAT	2 cut(s)	846, 1453
MseI	TTAA	8 cut(s)	504, 702, 960, 1026, 1224, 1329, 1758, 1828
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	953
MspR9I	CCNGG	1 cut(s)	1378
MunI	CAATTG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	1378
MwoI	GCNNNNNNNGC	2 cut(s)	1634, 1678
NdeI	CATATG	3 cut(s)	432, 1273, 1432
NdeII	GATC	4 cut(s)	231, 900, 1653, 1728
NlaIII	CATG	3 cut(s)	33, 1291, 1346
NlaIV	GGNNCC	2 cut(s)	281, 1470
NmuCI	GTSAC	2 cut(s)	336, 1531
NsiI	ATGCAT	2 cut(s)	846, 1453
NspV	TTCGAA	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	459
PaeR7I	CTCGAG	1 cut(s)	42
PaqCI	CACCTGC	1 cut(s)	1815
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	78, 236, 1339
PkrI	GCNGC	4 cut(s)	60, 952, 955, 1585
PleI	GAGTC	3 cut(s)	194, 1482, 1594
PmaCI	CACGTG	1 cut(s)	1531
PmlI	CACGTG	1 cut(s)	1531
PpsI	GAGTC	3 cut(s)	194, 1482, 1594
Ppu21I	YACGTR	1 cut(s)	1531
PshBI	ATTAAT	2 cut(s)	702, 1026
PsiI	TTATAA	4 cut(s)	795, 1014, 1130, 1217
Psp124BI	GAGCTC	2 cut(s)	183, 258
Psp6I	CCWGG	1 cut(s)	1376
PspCI	CACGTG	1 cut(s)	1531
PspEI	GGTNACC	1 cut(s)	1204
PspGI	CCWGG	1 cut(s)	1376
PspN4I	GGNNCC	2 cut(s)	281, 1470
PspOMI	GGGCCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	279, 280
PspXI	VCTCGAGB	1 cut(s)	42
PstI	CTGCAG	1 cut(s)	1565
PvuII	CAGCTG	1 cut(s)	953
RsaI	GTAC	4 cut(s)	269, 359, 644, 1698
RsaNI	GTAC	4 cut(s)	268, 358, 643, 1697
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	2 cut(s)	183, 258
SaqAI	TTAA	8 cut(s)	504, 702, 960, 1026, 1224, 1329, 1758, 1828
SatI	GCNGC	4 cut(s)	59, 951, 954, 1584
Sau3AI	GATC	4 cut(s)	231, 900, 1653, 1728
Sau96I	GGNCC	2 cut(s)	279, 280
SchI	GAGTC	3 cut(s)	194, 1482, 1594
ScrFI	CCNGG	1 cut(s)	1378
SduI	GDGCHC	5 cut(s)	49, 183, 258, 283, 1523
SfaNI	GCATC	3 cut(s)	844, 1228, 1678
SfcI	CTRYAG	1 cut(s)	1561
Sfr274I	CTCGAG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	512
SlaI	CTCGAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	3 cut(s)	42, 1052, 1594
SmoI	CTYRAG	3 cut(s)	42, 1052, 1594
SsiI	CCGC	2 cut(s)	674, 1072
SspI	AATATT	4 cut(s)	310, 694, 886, 913
SspMI	CTAG	3 cut(s)	447, 1167, 1821
SstI	GAGCTC	2 cut(s)	183, 258
StyD4I	CCNGG	1 cut(s)	1376
StyI	CCWWGG	1 cut(s)	1523
TaaI	ACNGT	4 cut(s)	126, 217, 579, 802
TaiI	ACGT	2 cut(s)	1322, 1533
TaqI	TCGA	4 cut(s)	43, 234, 512, 1738
TatI	WGTACW	2 cut(s)	642, 1696
TfiI	GAWTC	3 cut(s)	78, 236, 1339
Tru1I	TTAA	8 cut(s)	504, 702, 960, 1026, 1224, 1329, 1758, 1828
Tru9I	TTAA	8 cut(s)	504, 702, 960, 1026, 1224, 1329, 1758, 1828
TscAI	CASTG	2 cut(s)	176, 1026
TseFI	GTSAC	2 cut(s)	336, 1531
TseI	GCWGC	4 cut(s)	58, 950, 953, 1583
Tsp45I	GTSAC	2 cut(s)	336, 1531
TspDTI	ATGAA	9 cut(s)	399, 419, 633, 773, 1274, 1290, 1331, 1722, 1764
TspRI	CASTG	2 cut(s)	176, 1026
VspI	ATTAAT	2 cut(s)	702, 1026
XapI	RAATTY	2 cut(s)	386, 508
XhoI	CTCGAG	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	325
XspI	CTAG	3 cut(s)	447, 1167, 1821
Zsp2I	ATGCAT	2 cut(s)	846, 1453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.