MD02G1110600.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0008008
Physical Location & Seq
Reverse (-)
8990229 .. 8992078
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1110600.v1.1.491

Sequence Viewer

Length: 1803 bp
ATGCTGAAGCTCCTCTCCTCCTCCTCCGCATGCCTCCATGCCGGCCGAACCTGCACCAGACTCTGCTCCTCAACTTCCACCTCCACAACTCCAACATCACCGCCATTCAACCTCCCATTAATTTCAGAGCTCATAGAAAAGCAACACTGGTCGGAGTTCAAAACCCATCTCAAAGACTTGAGCTTTGTGACAGTTGCCCGCCAACTGTTCGACGCGGGAGCTGACTCAAAGATAATACTGAGGTACTTCACTTGGTCCCAGAAGGATCACAAATTTACTCACCCTCTTGAACTTACTTGTAGGCTCTTGCACTCCCTAGCAAATGTGAAAGAGTACTCGGATATCAGAGCTTTCTTGGATAGATTTGTTAGAAGCCATGAAAATCATTCAGTTTCTTCGATTTTTCACTTGCTTCCAATGGGTGGGAGTCAGTTTTGTGCAAATTGTGTTATAGTTGATATGTTGGTGTTGGCATATGTGAAAAATATGAGGACCCGGTTGGGTTTCGAGGCGTTTCAGAGAGCCGGTGATTACGGGTTTAAGTTGTCGAAATTGGCTTGTAACCCTTTGTTGAGTGGTTTGGTGAAGGAAAATGAAATTGGGTGTGTTGAGTATGTGTACAAAGAGATTATTAGGAGGAGGATAGAGGCTGATTTGTTCACTTTCAATATTGTGATTAATGGGTTGTGTAAAGTTGGGAAATTGAACAAGGCAAGGGATATTACTAACGACATGAAGGCTCGTGGGATCCCACCGAATGTGGTTACTTATAATTCTCTTATTGACGGGTATTGCAAAATGGGCGGTTTGGGGAAGATGCACAAAGCCGATGCCATTTTGAAGGAGATGGTGGCGTATAATATTCGCCCGAATGAGATTACTTTTAATATTTTGATTGATGGGTTCTGTAAAGATGAAAATGTCGCATCTGCACTCAAGGTTTTCGAGGAAATGAAGCAGGGTTTGAAACCCAATGTGGTTACATATAATTCACTTATTAATGGGTTATGTTGTAATGGGAAGCTGGACGAGGCTTGTGGTTTGCGGGATGAAATGCTTCGACTTGGTTTGAAGCCAAATATAGTTACCTACAATGCACTCATAAATGGGTTCTGCAAGAAGAAGAGGATGAAGGAAGCTAGAGAGTTGTTTGATGACATTAGGAACCAAGGTATGGCGCCTAATGTTATAACCTATAATATGCTAATTGATGCTTACTGTAAGGATGAGAGGATGGAGGAAGCATATGCATTGTTTCATTCAATGTCAGAGAGAGGGGTTTCCCCCAACACTTCGACATTTAACTGCCAAATTTCTGGTTTCTGTAGGCAAGGAAACGTGGGAACAGCCAGGAAGTTCTTAGATGAAATGGAGAGTAGGGGCTTGAAAGCTGATCCCATAACGTATAATATATTAATAGATGGATTGTGCAAAGGAGGGGAGTCCAGAAAGGCAGAAAGGTTATTGAATGAGATGTTCAAAAAGGGTTTGAGTCCTAGCCATGTGACATACAATACCTTGATGGATGGGTATTGCAGGGAAGGAAACATGAAGGCAGCTTTGAATGTGAGGGTACAGATGGAGAAAGAAGGGAAGCGGGCAAATATTGTAACATTCAACGTGTTGATCAAGGGATGTTGCATGAAGGGCAAACTTGAAGTTGCAAATAAACTTCTTAATGAGATGTTGGAGAAAGGTTTGATCCCAAATCGAACTACTTATGAAGTAGTAAAAGAAGAAATGATGGACAAAGGTTTCCTTCCTGATATAGATGGACATCTGTATAATATCTCTCGTTCTTAG

Protein Analysis

601

Amino Acids

67.7

Weight (kDa)

8.87

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 186 - 231 1.2e-07 PPR repeat family
PPR_3 PF13812 208 - 265 1.2e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 215 - 246 2.9e-08 PPR repeat
PPR_2 PF13041 218 - 266 3.1e-19 PPR repeat family
PPR PF01535 220 - 250 2.5e-06 PPR repeat
PPR_1 PF12854 248 - 283 2.4e-09 PPR repeat
PPR_2 PF13041 271 - 304 3.1e-09 PPR repeat family
PPR_3 PF13812 279 - 334 1.2e-12 Pentatricopeptide repeat domain
TPR_24 PF23276 280 - 386 8.2e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 287 - 319 1e-12 PPR repeat
PPR_2 PF13041 293 - 337 1.4e-16 PPR repeat family
PPR PF01535 293 - 320 9.7e-07 PPR repeat
PPR_1 PF12854 321 - 352 7.8e-16 PPR repeat
PPR_2 PF13041 324 - 373 4.8e-20 PPR repeat family
PPR PF01535 327 - 357 2e-09 PPR repeat
PPR_3 PF13812 349 - 407 1.3e-14 Pentatricopeptide repeat domain
PPR_1 PF12854 356 - 386 3.6e-13 PPR repeat
PPR_2 PF13041 359 - 408 5.1e-20 PPR repeat family
PPR PF01535 362 - 391 2e-08 PPR repeat
PPR_long PF17177 375 - 505 1.1e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 391 - 422 1.4e-12 PPR repeat
PPR_2 PF13041 394 - 443 7.3e-19 PPR repeat family
PPR PF01535 397 - 427 5.7e-09 PPR repeat
PPR_1 PF12854 425 - 458 1.8e-10 PPR repeat
PPR_2 PF13041 429 - 478 1.4e-16 PPR repeat family
TPR_24 PF23276 443 - 559 2.2e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 453 - 511 1.2e-10 Pentatricopeptide repeat domain
PPR_long PF17177 455 - 579 4.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 460 - 492 2e-11 PPR repeat
PPR PF01535 467 - 497 2.5e-08 PPR repeat
PPR_2 PF13041 467 - 512 4.9e-17 PPR repeat family
PPR_3 PF13812 487 - 546 1.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 495 - 528 2.3e-11 PPR repeat
PPR_2 PF13041 499 - 547 1.9e-16 PPR repeat family
PPR PF01535 502 - 531 2.1e-07 PPR repeat
PPR_3 PF13812 526 - 576 2.6e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 534 - 562 3.1e-08 PPR repeat
PPR_2 PF13041 535 - 576 4.7e-13 PPR repeat family
PPR PF01535 537 - 567 7e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 771, 1190
Acc36I ACCTGC 1 cut(s) 59
AccB1I GGYRCC 1 cut(s) 1177
AccB7I CCANNNNNTGG 2 cut(s) 422, 1174
AccII CGCG 1 cut(s) 215
AciI CCGC 7 cut(s) 27, 101, 199, 215, 804, 1045, 1597
AclWI GGATC 5 cut(s) 273, 742, 755, 1388, 1696
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 2 cut(s) 272, 1311
AcuI CTGAAG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 1178
AfaI GTAC 4 cut(s) 245, 335, 620, 1575
AfiI CCNNNNNNNGG 2 cut(s) 422, 1174
AflIII ACRYGT 1 cut(s) 1620
AjnI CCWGG 1 cut(s) 1349
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 9 cut(s) 10, 130, 183, 221, 350, 1024, 1139, 1391, 1559
AluI AGCT 9 cut(s) 10, 130, 183, 221, 350, 1024, 1139, 1391, 1559
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 5 cut(s) 273, 742, 755, 1388, 1696
AlwNI CAGNNNCTG 1 cut(s) 63
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 1556
ApoI RAATTY 2 cut(s) 272, 1311
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AseI ATTAAT 4 cut(s) 119, 678, 999, 1415
Asp700I GAANNNNTTC 1 cut(s) 1056
AspLEI GCGC 1 cut(s) 1180
AspS9I GGNCC 2 cut(s) 255, 492
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 4 cut(s) 90, 272, 539, 595
AvaII GGWCC 2 cut(s) 255, 492
BamHI GGATCC 1 cut(s) 747
BanI GGYRCC 1 cut(s) 1177
BanII GRGCYC 1 cut(s) 132
BauI CACGAG 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 1568
BciT130I CCWGG 1 cut(s) 1351
BclI TGATCA 1 cut(s) 1626
BcnI CCSGG 1 cut(s) 496
BfaI CTAG 3 cut(s) 317, 1140, 1497
BfmI CTRYAG 1 cut(s) 1324
BfoI RGCGCY 1 cut(s) 1181
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 1557
BlsI GCNGC 1 cut(s) 1558
BmcAI AGTACT 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 496, 1351
Bme18I GGWCC 2 cut(s) 255, 492
BmgT120I GGNCC 2 cut(s) 255, 492
BmiI GGNNCC 5 cut(s) 257, 494, 749, 1166, 1179
BmrFI CCNGG 2 cut(s) 496, 1351
BmsI GCATC 4 cut(s) 807, 820, 935, 1201
BpuEI CTTGAG 2 cut(s) 199, 920
BpuMI CCSGG 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 1776
BsaHI GRCGYC 1 cut(s) 1178
BsaJI CCNNGG 1 cut(s) 1168
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 1174
Bse118I RCCGGY 2 cut(s) 41, 524
Bse1I ACTGG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 1776
BseBI CCWGG 1 cut(s) 1351
BseDI CCNNGG 1 cut(s) 1168
BseGI GGATG 6 cut(s) 1054, 1134, 1231, 1239, 1531, 1640
BseJI GATNNNNATC 1 cut(s) 1776
BseLI CCNNNNNNNGG 2 cut(s) 422, 1174
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 5 cut(s) 7, 10, 13, 58, 652
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 1568
BsgI GTGCAG 2 cut(s) 37, 915
Bsh1236I CGCG 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 1177
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 3 cut(s) 42, 496, 525
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 2 cut(s) 422, 1174
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 618
Bsp143I GATC 5 cut(s) 265, 747, 1393, 1626, 1701
BspACI CCGC 7 cut(s) 27, 101, 199, 215, 804, 1045, 1597
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 5 cut(s) 257, 494, 749, 1166, 1179
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 5 cut(s) 273, 742, 755, 1388, 1696
BspT107I GGYRCC 1 cut(s) 1177
BsrFI RCCGGY 2 cut(s) 41, 524
BsrGI TGTACA 1 cut(s) 618
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 2 cut(s) 41, 524
BssECI CCNNGG 1 cut(s) 1168
BssMI GATC 5 cut(s) 265, 747, 1393, 1626, 1701
BssNI GRCGYC 1 cut(s) 1178
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 1168
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 1351
Bst4CI ACNGT 3 cut(s) 193, 207, 1220
Bst6I CTCTTC 1 cut(s) 1118
BstACI GRCGYC 1 cut(s) 1178
BstAUI TGTACA 1 cut(s) 618
BstC8I GCNNGC 4 cut(s) 31, 43, 199, 1599
BstDEI CTNAG 3 cut(s) 239, 1360, 1800
BstF5I GGATG 6 cut(s) 1054, 1134, 1231, 1239, 1531, 1640
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 1181
BstHHI GCGC 1 cut(s) 1180
BstKTI GATC 5 cut(s) 268, 750, 1396, 1629, 1704
BstMBI GATC 5 cut(s) 265, 747, 1393, 1626, 1701
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 51, 801, 1647
BstNI CCWGG 1 cut(s) 1351
BstNSI RCATGY 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 494, 1349
BstSFI CTRYAG 1 cut(s) 1324
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 1568
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 1 cut(s) 1316
BstYI RGATCY 1 cut(s) 747
BstZI CGGCCG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 6 cut(s) 1054, 1134, 1231, 1239, 1531, 1640
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 59
Cac8I GCNNGC 4 cut(s) 31, 43, 199, 1599
CaiI CAGNNNCTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 1180
Cfr10I RCCGGY 2 cut(s) 41, 524
Cfr13I GGNCC 2 cut(s) 255, 492
CseI GACGC 1 cut(s) 221
Csp6I GTAC 4 cut(s) 244, 334, 619, 1574
CviAII CATG 7 cut(s) 30, 38, 377, 733, 1502, 1549, 1642
CviQI GTAC 4 cut(s) 244, 334, 619, 1574
DdeI CTNAG 3 cut(s) 239, 1360, 1800
DinI GGCGCC 1 cut(s) 1179
DpnI GATC 5 cut(s) 267, 749, 1395, 1628, 1703
DpnII GATC 5 cut(s) 265, 747, 1393, 1626, 1701
EaeI YGGCCR 1 cut(s) 43
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 1118
EarI CTCTTC 1 cut(s) 1118
Ecl136II GAGCTC 1 cut(s) 130
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 1168
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 2 cut(s) 255, 492
Eco52I CGGCCG 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 1349
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 1168
EcoT22I ATGCAT 1 cut(s) 1252
EcoT38I GRGCYC 1 cut(s) 132
EgeI GGCGCC 1 cut(s) 1179
EheI GGCGCC 1 cut(s) 1179
ErhI CCWWGG 1 cut(s) 1168
FaeI CATG 7 cut(s) 33, 41, 380, 736, 1505, 1552, 1645
FalI AAGNNNNNCTT 2 cut(s) 1743, 1775
FaqI GGGAC 1 cut(s) 241
FatI CATG 7 cut(s) 29, 37, 376, 732, 1501, 1548, 1641
FauI CCCGC 4 cut(s) 206, 208, 1038, 1590
FauNDI CATATG 2 cut(s) 475, 1246
FbaI TGATCA 1 cut(s) 1626
Fnu4HI GCNGC 1 cut(s) 1557
FokI GGATG 6 cut(s) 1061, 1141, 1238, 1246, 1538, 1647
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 1557
FspBI CTAG 3 cut(s) 317, 1140, 1497
GlaI GCGC 1 cut(s) 1179
GluI GCNGC 1 cut(s) 1557
HaeII RGCGCY 1 cut(s) 1181
HaeIII GGCC 1 cut(s) 45
HapII CCGG 3 cut(s) 42, 496, 525
HgaI GACGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 1180
Hin1I GRCGYC 1 cut(s) 1178
Hin1II CATG 7 cut(s) 33, 41, 380, 736, 1505, 1552, 1645
Hin6I GCGC 1 cut(s) 1178
HinP1I GCGC 1 cut(s) 1178
HinfI GANTC 5 cut(s) 60, 224, 427, 1442, 1492
HpaII CCGG 3 cut(s) 42, 496, 525
HphI GGTGA 4 cut(s) 90, 272, 539, 595
Hpy166II GTNNAC 2 cut(s) 619, 660
Hpy188I TCNGA 6 cut(s) 127, 154, 340, 347, 519, 1270
Hpy188III TCNNGA 3 cut(s) 287, 1446, 1763
Hpy8I GTNNAC 2 cut(s) 619, 660
Hpy99I CGWCG 1 cut(s) 215
HpyCH4III ACNGT 3 cut(s) 193, 207, 1220
HpyCH4IV ACGT 3 cut(s) 1338, 1403, 1620
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 801, 1647
HpyF3I CTNAG 3 cut(s) 239, 1360, 1800
HpySE526I ACGT 3 cut(s) 1338, 1403, 1620
Hsp92I GRCGYC 1 cut(s) 1178
Hsp92II CATG 7 cut(s) 33, 41, 380, 736, 1505, 1552, 1645
HspAI GCGC 1 cut(s) 1178
KasI GGCGCC 1 cut(s) 1177
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 1626
Kzo9I GATC 5 cut(s) 265, 747, 1393, 1626, 1701
LmnI GCTCC 3 cut(s) 15, 71, 218
Lsp1109I GCAGC 1 cut(s) 1568
LweI GCATC 4 cut(s) 807, 820, 935, 1201
MaeI CTAG 3 cut(s) 317, 1140, 1497
MaeII ACGT 3 cut(s) 1338, 1403, 1620
MaeIII GTNAC 7 cut(s) 187, 560, 763, 979, 1084, 1504, 1609
MalI GATC 5 cut(s) 267, 749, 1395, 1628, 1703
MboI GATC 5 cut(s) 265, 747, 1393, 1626, 1701
MboII GAAGA 5 cut(s) 387, 826, 1132, 1135, 1748
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 1 cut(s) 132
Mly113I GGCGCC 1 cut(s) 1178
MlyI GAGTC 5 cut(s) 54, 218, 436, 1451, 1501
MmeI TCCRAC 3 cut(s) 116, 132, 1668
Mph1103I ATGCAT 1 cut(s) 1252
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 8 cut(s) 119, 540, 678, 885, 999, 1302, 1415, 1677
MspI CCGG 3 cut(s) 42, 496, 525
MspR9I CCNGG 2 cut(s) 496, 1351
MvaI CCWGG 1 cut(s) 1351
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 3 cut(s) 51, 801, 1647
NaeI GCCGGC 1 cut(s) 43
NarI GGCGCC 1 cut(s) 1178
NciI CCSGG 1 cut(s) 496
NdeI CATATG 2 cut(s) 475, 1246
NdeII GATC 5 cut(s) 265, 747, 1393, 1626, 1701
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 7 cut(s) 33, 41, 380, 736, 1505, 1552, 1645
NlaIV GGNNCC 5 cut(s) 257, 494, 749, 1166, 1179
NmuCI GTSAC 2 cut(s) 187, 1504
NsiI ATGCAT 1 cut(s) 1252
NspI RCATGY 1 cut(s) 33
PaeI GCATGC 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 1056
PflMI CCANNNNNTGG 2 cut(s) 422, 1174
PkrI GCNGC 1 cut(s) 1558
PleI GAGTC 5 cut(s) 54, 218, 435, 1450, 1500
PluTI GGCGCC 1 cut(s) 1181
PpsI GAGTC 5 cut(s) 54, 218, 435, 1450, 1500
PpuMI RGGWCCY 1 cut(s) 492
PshBI ATTAAT 4 cut(s) 119, 678, 999, 1415
PsiI TTATAA 2 cut(s) 771, 1190
Psp124BI GAGCTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 1349
PspGI CCWGG 1 cut(s) 1349
PspN4I GGNNCC 5 cut(s) 257, 494, 749, 1166, 1179
PspPI GGNCC 2 cut(s) 255, 492
PspPPI RGGWCCY 1 cut(s) 492
PstNI CAGNNNCTG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 4 cut(s) 245, 335, 620, 1575
RsaNI GTAC 4 cut(s) 244, 334, 619, 1574
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 8 cut(s) 119, 540, 678, 885, 999, 1302, 1415, 1677
SatI GCNGC 1 cut(s) 1557
Sau3AI GATC 5 cut(s) 265, 747, 1393, 1626, 1701
Sau96I GGNCC 2 cut(s) 255, 492
ScaI AGTACT 1 cut(s) 335
SchI GAGTC 5 cut(s) 54, 218, 436, 1451, 1501
ScrFI CCNGG 2 cut(s) 496, 1351
SduI GDGCHC 1 cut(s) 132
SfaNI GCATC 4 cut(s) 807, 820, 935, 1201
SfcI CTRYAG 1 cut(s) 1324
SfoI GGCGCC 1 cut(s) 1179
SinI GGWCC 2 cut(s) 255, 492
SmlI CTYRAG 2 cut(s) 178, 935
SmoI CTYRAG 2 cut(s) 178, 935
SphI GCATGC 1 cut(s) 33
SsiI CCGC 7 cut(s) 27, 101, 199, 215, 804, 1045, 1597
SspDI GGCGCC 1 cut(s) 1177
SspI AATATT 4 cut(s) 670, 862, 889, 1606
SspMI CTAG 3 cut(s) 317, 1140, 1497
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 494, 1349
StyI CCWWGG 1 cut(s) 1168
TaaI ACNGT 3 cut(s) 193, 207, 1220
TaiI ACGT 3 cut(s) 1341, 1406, 1623
TaqI TCGA 8 cut(s) 210, 398, 507, 548, 945, 1060, 1295, 1711
TatI WGTACW 2 cut(s) 333, 618
Tru1I TTAA 8 cut(s) 119, 540, 678, 885, 999, 1302, 1415, 1677
Tru9I TTAA 8 cut(s) 119, 540, 678, 885, 999, 1302, 1415, 1677
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 2 cut(s) 187, 1504
TseI GCWGC 1 cut(s) 1556
Tsp45I GTSAC 2 cut(s) 187, 1504
TspRI CASTG 1 cut(s) 152
Van91I CCANNNNNTGG 2 cut(s) 422, 1174
VpaK11BI GGWCC 2 cut(s) 255, 492
VspI ATTAAT 4 cut(s) 119, 678, 999, 1415
XapI RAATTY 2 cut(s) 272, 1311
XceI RCATGY 1 cut(s) 33
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 3 cut(s) 317, 1140, 1497
ZrmI AGTACT 1 cut(s) 335
Zsp2I ATGCAT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.