Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09820 |
| fragaria_vesca | FvH4_1g12100 FvH4_6g07430 |
| malus_domestica | MD02G1110600.v1.1 |
| prunus_persica | Prupe.7G165800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0099761 RchiOBHm_Chr3g0457031 |
| rosa_laevigata | RLG00000016911 RLG00000025250 |
| rosa_multiflora | Rmu_co8452377.1_g000001 Rmu_sc0000488.1_g000002 Rmu_sc0006209.1_g000003 Rmu_sc0008864.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00142790 Rroxscaffold_6G00422250 |
| rosa_rugosa | Rorug02G0082800 Rorug03G0018700 |
| rosa_samantha | Rh2AG132500 Rh2BG135300 Rh2CG136600 Rh2DG137100 Rh3AG078400 |
| rosa_wichuraiana | Rw2G010250 Rw3G006730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 389, 708 |
| AccB1I | GGYRCC | 1 cut(s) | 1114 |
| AccI | GTMKAC | 1 cut(s) | 238 |
| AccII | CGCG | 1 cut(s) | 128 |
| AciI | CCGC | 3 cut(s) | 128, 869, 1534 |
| AclWI | GGATC | 2 cut(s) | 38, 1325 |
| AcsI | RAATTY | 3 cut(s) | 202, 328, 379 |
| AcuI | CTGAAG | 1 cut(s) | 1508 |
| AcvI | CACGTG | 1 cut(s) | 1441 |
| AfaI | GTAC | 4 cut(s) | 182, 557, 1448, 1651 |
| AflIII | ACRYGT | 1 cut(s) | 1340 |
| AjnI | CCWGG | 1 cut(s) | 1110 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 419, 451, 519, 551 |
| Alw21I | GWGCWC | 1 cut(s) | 69 |
| AlwI | GGATC | 2 cut(s) | 38, 1325 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 158 |
| AoxI | GGCC | 1 cut(s) | 1108 |
| ApeKI | GCWGC | 1 cut(s) | 1493 |
| ApoI | RAATTY | 3 cut(s) | 202, 328, 379 |
| AseI | ATTAAT | 3 cut(s) | 615, 936, 1352 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 203, 450, 1216 |
| AspS9I | GGNCC | 1 cut(s) | 1639 |
| AsuHPI | GGTGA | 5 cut(s) | 128, 476, 532, 681, 794 |
| AsuII | TTCGAA | 1 cut(s) | 326 |
| AvaII | GGWCC | 1 cut(s) | 1639 |
| BaeGI | GKGCMC | 1 cut(s) | 1119 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 164, 172, 197, 205 |
| BanI | GGYRCC | 1 cut(s) | 1114 |
| BanII | GRGCYC | 1 cut(s) | 69 |
| BbrPI | CACGTG | 1 cut(s) | 1441 |
| BbsI | GAAGAC | 1 cut(s) | 434 |
| Bbv12I | GWGCWC | 1 cut(s) | 69 |
| BbvI | GCAGC | 1 cut(s) | 1505 |
| BciT130I | CCWGG | 1 cut(s) | 1112 |
| BclI | TGATCA | 1 cut(s) | 1563 |
| BfaI | CTAG | 4 cut(s) | 254, 1287, 1434, 1731 |
| BfmI | CTRYAG | 1 cut(s) | 1261 |
| BisI | GCNGC | 1 cut(s) | 1494 |
| BlsI | GCNGC | 1 cut(s) | 1495 |
| Bme1390I | CCNGG | 1 cut(s) | 1112 |
| Bme18I | GGWCC | 1 cut(s) | 1639 |
| BmgT120I | GGNCC | 1 cut(s) | 1639 |
| BmiI | GGNNCC | 2 cut(s) | 1116, 1641 |
| BmrFI | CCNGG | 1 cut(s) | 1112 |
| BmrI | ACTGGG | 1 cut(s) | 158 |
| BmsI | GCATC | 6 cut(s) | 139, 744, 757, 1138, 1348, 1611 |
| BmuI | ACTGGG | 1 cut(s) | 158 |
| BpiI | GAAGAC | 1 cut(s) | 434 |
| BpmI | CTGGAG | 1 cut(s) | 1646 |
| Bpu14I | TTCGAA | 1 cut(s) | 326 |
| BpuEI | CTTGAG | 1 cut(s) | 46 |
| BsaAI | YACGTR | 1 cut(s) | 1441 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1098, 1128 |
| Bse1I | ACTGG | 2 cut(s) | 164, 367 |
| Bse3DI | GCAATG | 1 cut(s) | 1187 |
| BseBI | CCWGG | 1 cut(s) | 1112 |
| BseGI | GGATG | 3 cut(s) | 661, 991, 1468 |
| BseMI | GCAATG | 1 cut(s) | 1187 |
| BseMII | CTCAG | 1 cut(s) | 190 |
| BseNI | ACTGG | 2 cut(s) | 164, 367 |
| BseRI | GAGGAG | 1 cut(s) | 589 |
| BseSI | GKGCMC | 1 cut(s) | 1119 |
| BseXI | GCAGC | 1 cut(s) | 1505 |
| Bsh1236I | CGCG | 1 cut(s) | 128 |
| BshFI | GGCC | 1 cut(s) | 1110 |
| BshNI | GGYRCC | 1 cut(s) | 1114 |
| BsiHKAI | GWGCWC | 1 cut(s) | 69 |
| BslFI | GGGAC | 4 cut(s) | 6, 1584, 1625, 1725 |
| BsmFI | GGGAC | 4 cut(s) | 6, 1584, 1625, 1725 |
| BsmI | GAATGC | 2 cut(s) | 10, 322 |
| BsnI | GGCC | 1 cut(s) | 1110 |
| Bsp119I | TTCGAA | 1 cut(s) | 326 |
| Bsp1286I | GDGCHC | 2 cut(s) | 69, 1119 |
| Bsp1407I | TGTACA | 1 cut(s) | 555 |
| Bsp143I | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| BspACI | CCGC | 3 cut(s) | 128, 869, 1534 |
| BspANI | GGCC | 1 cut(s) | 1110 |
| BspCNI | CTCAG | 1 cut(s) | 189 |
| BspFNI | CGCG | 1 cut(s) | 128 |
| BspLI | GGNNCC | 2 cut(s) | 1116, 1641 |
| BspPI | GGATC | 2 cut(s) | 38, 1325 |
| BspT104I | TTCGAA | 1 cut(s) | 326 |
| BspT107I | GGYRCC | 1 cut(s) | 1114 |
| BsrDI | GCAATG | 1 cut(s) | 1187 |
| BsrGI | TGTACA | 1 cut(s) | 555 |
| BsrI | ACTGG | 2 cut(s) | 164, 367 |
| BssMI | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| Bst2UI | CCWGG | 1 cut(s) | 1112 |
| Bst4CI | ACNGT | 2 cut(s) | 144, 1157 |
| BstAUI | TGTACA | 1 cut(s) | 555 |
| BstBAI | YACGTR | 1 cut(s) | 1441 |
| BstBI | TTCGAA | 1 cut(s) | 326 |
| BstC8I | GCNNGC | 2 cut(s) | 408, 1536 |
| BstDEI | CTNAG | 3 cut(s) | 9, 176, 292 |
| BstF5I | GGATG | 3 cut(s) | 661, 991, 1468 |
| BstFNI | CGCG | 1 cut(s) | 128 |
| BstKTI | GATC | 4 cut(s) | 33, 282, 1333, 1566 |
| BstMBI | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| BstNI | CCWGG | 1 cut(s) | 1112 |
| BstNSI | RCATGY | 1 cut(s) | 349 |
| BstSCI | CCNGG | 1 cut(s) | 1110 |
| BstSFI | CTRYAG | 1 cut(s) | 1261 |
| BstSLI | GKGCMC | 1 cut(s) | 1119 |
| BstUI | CGCG | 1 cut(s) | 128 |
| BstV1I | GCAGC | 1 cut(s) | 1505 |
| BstV2I | GAAGAC | 1 cut(s) | 434 |
| BstX2I | RGATCY | 1 cut(s) | 30 |
| BstYI | RGATCY | 1 cut(s) | 30 |
| BsuRI | GGCC | 1 cut(s) | 1110 |
| BtsCI | GGATG | 3 cut(s) | 661, 991, 1468 |
| Cac8I | GCNNGC | 2 cut(s) | 408, 1536 |
| CaiI | CAGNNNCTG | 1 cut(s) | 158 |
| Cfr13I | GGNCC | 1 cut(s) | 1639 |
| Csp6I | GTAC | 4 cut(s) | 181, 556, 1447, 1650 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 721, 756 |
| CviAII | CATG | 6 cut(s) | 18, 346, 670, 1163, 1276, 1301 |
| CviQI | GTAC | 4 cut(s) | 181, 556, 1447, 1650 |
| DdeI | CTNAG | 3 cut(s) | 9, 176, 292 |
| DpnI | GATC | 4 cut(s) | 32, 281, 1332, 1565 |
| DpnII | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| DraI | TTTAAA | 1 cut(s) | 1417 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| Eco147I | AGGCCT | 1 cut(s) | 1110 |
| Eco24I | GRGCYC | 1 cut(s) | 69 |
| Eco47I | GGWCC | 1 cut(s) | 1639 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 1508 |
| Eco72I | CACGTG | 1 cut(s) | 1441 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 328 |
| EcoRII | CCWGG | 1 cut(s) | 1110 |
| EcoT22I | ATGCAT | 1 cut(s) | 1363 |
| EcoT38I | GRGCYC | 1 cut(s) | 69 |
| FaeI | CATG | 6 cut(s) | 21, 349, 673, 1166, 1279, 1304 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1680, 1712 |
| FaqI | GGGAC | 4 cut(s) | 6, 1584, 1625, 1725 |
| FatI | CATG | 6 cut(s) | 17, 345, 669, 1162, 1275, 1300 |
| FauI | CCCGC | 1 cut(s) | 1527 |
| FauNDI | CATATG | 2 cut(s) | 412, 1657 |
| FbaI | TGATCA | 1 cut(s) | 1563 |
| FblI | GTMKAC | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 1 cut(s) | 1494 |
| FokI | GGATG | 3 cut(s) | 668, 998, 1475 |
| FriOI | GRGCYC | 1 cut(s) | 69 |
| Fsp4HI | GCNGC | 1 cut(s) | 1494 |
| FspBI | CTAG | 4 cut(s) | 254, 1287, 1434, 1731 |
| GluI | GCNGC | 1 cut(s) | 1494 |
| GsuI | CTGGAG | 1 cut(s) | 1646 |
| HaeIII | GGCC | 1 cut(s) | 1110 |
| Hin1II | CATG | 6 cut(s) | 21, 349, 673, 1166, 1279, 1304 |
| HindIII | AAGCTT | 3 cut(s) | 675, 959, 1589 |
| HinfI | GANTC | 3 cut(s) | 113, 1379, 1429 |
| HphI | GGTGA | 5 cut(s) | 128, 476, 532, 681, 794 |
| Hpy166II | GTNNAC | 4 cut(s) | 239, 556, 597, 802 |
| Hpy188I | TCNGA | 6 cut(s) | 64, 91, 171, 284, 456, 933 |
| Hpy188III | TCNNGA | 4 cut(s) | 224, 1383, 1402, 1700 |
| Hpy8I | GTNNAC | 4 cut(s) | 239, 556, 597, 802 |
| Hpy99I | CGWCG | 1 cut(s) | 1237 |
| HpyCH4III | ACNGT | 2 cut(s) | 144, 1157 |
| HpyCH4IV | ACGT | 4 cut(s) | 1235, 1340, 1440, 1445 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 176, 292 |
| HpySE526I | ACGT | 4 cut(s) | 1235, 1340, 1440, 1445 |
| Hsp92II | CATG | 6 cut(s) | 21, 349, 673, 1166, 1279, 1304 |
| Ksp22I | TGATCA | 1 cut(s) | 1563 |
| Kzo9I | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| LmnI | GCTCC | 1 cut(s) | 155 |
| Lsp1109I | GCAGC | 1 cut(s) | 1505 |
| LweI | GCATC | 6 cut(s) | 139, 744, 757, 1138, 1348, 1611 |
| MaeI | CTAG | 4 cut(s) | 254, 1287, 1434, 1731 |
| MaeII | ACGT | 4 cut(s) | 1235, 1340, 1440, 1445 |
| MaeIII | GTNAC | 7 cut(s) | 211, 497, 658, 700, 1021, 1441, 1546 |
| MalI | GATC | 4 cut(s) | 32, 281, 1332, 1565 |
| MboI | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| MboII | GAAGA | 8 cut(s) | 125, 211, 324, 439, 763, 1072, 1685, 1688 |
| MflI | RGATCY | 1 cut(s) | 30 |
| MhlI | GDGCHC | 2 cut(s) | 69, 1119 |
| MlyI | GAGTC | 3 cut(s) | 107, 1388, 1438 |
| Mph1103I | ATGCAT | 1 cut(s) | 1363 |
| MroXI | GAANNNNTTC | 3 cut(s) | 203, 450, 1216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 807 |
| MspR9I | CCNGG | 1 cut(s) | 1112 |
| Mva1269I | GAATGC | 2 cut(s) | 10, 322 |
| MvaI | CCWGG | 1 cut(s) | 1112 |
| MvnI | CGCG | 1 cut(s) | 128 |
| NdeI | CATATG | 2 cut(s) | 412, 1657 |
| NdeII | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| NlaIII | CATG | 6 cut(s) | 21, 349, 673, 1166, 1279, 1304 |
| NlaIV | GGNNCC | 2 cut(s) | 1116, 1641 |
| NmuCI | GTSAC | 1 cut(s) | 1441 |
| NsiI | ATGCAT | 1 cut(s) | 1363 |
| NspI | RCATGY | 1 cut(s) | 349 |
| NspV | TTCGAA | 1 cut(s) | 326 |
| PceI | AGGCCT | 1 cut(s) | 1110 |
| PctI | GAATGC | 2 cut(s) | 10, 322 |
| PdmI | GAANNNNTTC | 3 cut(s) | 203, 450, 1216 |
| PkrI | GCNGC | 1 cut(s) | 1495 |
| PleI | GAGTC | 3 cut(s) | 107, 1387, 1437 |
| PmaCI | CACGTG | 1 cut(s) | 1441 |
| PmlI | CACGTG | 1 cut(s) | 1441 |
| PpsI | GAGTC | 3 cut(s) | 107, 1387, 1437 |
| Ppu21I | YACGTR | 1 cut(s) | 1441 |
| PshBI | ATTAAT | 3 cut(s) | 615, 936, 1352 |
| PsiI | TTATAA | 2 cut(s) | 389, 708 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| Psp6I | CCWGG | 1 cut(s) | 1110 |
| PspCI | CACGTG | 1 cut(s) | 1441 |
| PspGI | CCWGG | 1 cut(s) | 1110 |
| PspN4I | GGNNCC | 2 cut(s) | 1116, 1641 |
| PspPI | GGNCC | 1 cut(s) | 1639 |
| PstNI | CAGNNNCTG | 1 cut(s) | 158 |
| PsuI | RGATCY | 1 cut(s) | 30 |
| RsaI | GTAC | 4 cut(s) | 182, 557, 1448, 1651 |
| RsaNI | GTAC | 4 cut(s) | 181, 556, 1447, 1650 |
| RseI | CAYNNNNRTG | 1 cut(s) | 807 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SatI | GCNGC | 1 cut(s) | 1494 |
| Sau3AI | GATC | 4 cut(s) | 30, 279, 1330, 1563 |
| Sau96I | GGNCC | 1 cut(s) | 1639 |
| SchI | GAGTC | 3 cut(s) | 107, 1388, 1438 |
| ScrFI | CCNGG | 1 cut(s) | 1112 |
| SduI | GDGCHC | 2 cut(s) | 69, 1119 |
| SfaNI | GCATC | 6 cut(s) | 139, 744, 757, 1138, 1348, 1611 |
| SfcI | CTRYAG | 1 cut(s) | 1261 |
| SfuI | TTCGAA | 1 cut(s) | 326 |
| SinI | GGWCC | 1 cut(s) | 1639 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 807 |
| SmlI | CTYRAG | 1 cut(s) | 25 |
| SmoI | CTYRAG | 1 cut(s) | 25 |
| SseBI | AGGCCT | 1 cut(s) | 1110 |
| SsiI | CCGC | 3 cut(s) | 128, 869, 1534 |
| SspI | AATATT | 1 cut(s) | 826 |
| SspMI | CTAG | 4 cut(s) | 254, 1287, 1434, 1731 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| StuI | AGGCCT | 1 cut(s) | 1110 |
| StyD4I | CCNGG | 1 cut(s) | 1110 |
| TaaI | ACNGT | 2 cut(s) | 144, 1157 |
| TaiI | ACGT | 4 cut(s) | 1238, 1343, 1443, 1448 |
| TaqI | TCGA | 3 cut(s) | 116, 326, 1232 |
| TatI | WGTACW | 1 cut(s) | 555 |
| TseFI | GTSAC | 1 cut(s) | 1441 |
| TseI | GCWGC | 1 cut(s) | 1493 |
| Tsp45I | GTSAC | 1 cut(s) | 1441 |
| VpaK11BI | GGWCC | 1 cut(s) | 1639 |
| VspI | ATTAAT | 3 cut(s) | 615, 936, 1352 |
| XapI | RAATTY | 3 cut(s) | 202, 328, 379 |
| XceI | RCATGY | 1 cut(s) | 349 |
| XmiI | GTMKAC | 1 cut(s) | 238 |
| XmnI | GAANNNNTTC | 3 cut(s) | 203, 450, 1216 |
| XspI | CTAG | 4 cut(s) | 254, 1287, 1434, 1731 |
| Zsp2I | ATGCAT | 1 cut(s) | 1363 |