Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Forward (+)

3201685 .. 3204150

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTCAATGTCATCGTCCTCCTTTATCTCTCTCACTTTCTTCTTCCTTCTTCTCGTTTCTTCATCGTCATCTTCCGATGACATCTCTGAGCTATTCGACGACTGGTGCCAGAAACATGGCAAAACGTACGGTTCAGAAGAAGAGAGGCAACAGAGGATTCAAATCTTTAAAGATAATCACGACTTCGTTACGCAACACAATCTCATCACTAACGCTACTTACTCTCTCTCTCTCAATGCTTTCGCGGATCTGACTCACCACGAGTTCAAGGCTTCTCGTCTTGGTCTCTCTGTTTCCGCTCCGTCGGTGATAATGGCTAGTAAGGGACAGAGTCTCGGTGGTAGCGTAAAGGTTCCAGATTCTGTTGATTGGAGAAAGAAGGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGGGCATGTTGGTCGTTCTCGGCGACTGGAGCTATGGAGGGAATTAACCAGATAGTAACAGGAGATCTCATCAGCCTCTCTGAGCAGGAACTGATTGATTGTGACAAGTCCTACAATGCTGGCTGTAATGGTGGTCTCATGGACTATGCTTTTGAATTTGTCATTAAAAACCATGGAATAGACACAGAGAAAGACTATCCTTATCAAGAACGTGATGGCACCTGTAAGAAGGATAAGTTGAAACAAAAGGTTGTGACAATTGATAGCTATGCTGGTGTAAAATCAAATGATGAGAAAGCGTTAATGGAGGCTGTAGCGGCTCAGCCAGTTAGTGTTGGCATCTGTGGAAGCGAGAGAGCGTTTCAGCTATATTCTAGTGGAATATTCTCTGGCCCGTGTTCGACATCATTGGATCATGCTGTGCTCATAGTAGGATATGGTTCACAGAATGGTGTTGATTATTGGATTGTGAAAAACTCATGGGGAAAAAGTTGGGGAATGGATGGGTTTATGCACATGCAGCGTAACACTGAAAATTCAGACGGCGTTTGCGGAATCAACATGCTTGCTTCATATCCCATCAAGACACATCCAAACCCGCCTCCACCGTCCCCTCCTGGCCCTACAAAATGCAACCTTTTCACGTATTGTTCATCTGGAGAGACTTGTTGCTGTGCAAGAGAATTGTTTGGTTTATGCTTCTCATGGAAATGCTGCGAGATAGAATCCGCTGTGTGTTGCAAGGATGGTCGTCATTGTTGTCCACATGATTACCCTGTTTGTGATACAACCAGAAGTCTCTGCCTTAAGAAAACTGGTAATTTCACTGCGATCAAGCCCTTCTGGAAGAAGAATTCTTCAAAACAACTTGGCCGATTTGAGGAATGGGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

437

Amino Acids

48.07

Weight (kDa)

6.02

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	32 - 89	2.3e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	118 - 333	3.5e-85	Papain family cysteine protease
Granulin	PF00396	361 - 408	3.7e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	105, 635
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	245
AciI	CCGC	7 cut(s)	245, 297, 417, 734, 969, 1016, 1146
AclWI	GGATC	2 cut(s)	255, 837
AcoI	YGGCCR	1 cut(s)	1288
AcsI	RAATTY	3 cut(s)	572, 952, 1270
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	1297
AflII	CTTAAG	1 cut(s)	1223
AgsI	TTSAA	5 cut(s)	161, 268, 572, 658, 1278
AjnI	CCWGG	1 cut(s)	1033
AluBI	AGCT	6 cut(s)	91, 386, 414, 449, 684, 784
AluI	AGCT	6 cut(s)	91, 386, 414, 449, 684, 784
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	5 cut(s)	290, 338, 557, 1073, 1220
AlwI	GGATC	2 cut(s)	255, 837
AlwNI	CAGNNNCTG	2 cut(s)	362, 508
AoxI	GGCC	3 cut(s)	808, 1036, 1288
ApeKI	GCWGC	3 cut(s)	414, 937, 1131
ApoI	RAATTY	3 cut(s)	572, 952, 1270
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspS9I	GGNCC	2 cut(s)	809, 1037
AsuHPI	GGTGA	2 cut(s)	248, 319
BanI	GGYRCC	2 cut(s)	105, 635
BauI	CACGAG	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	401, 949, 1118
BccI	CCATC	4 cut(s)	626, 914, 1004, 1157
BceAI	ACGGC	1 cut(s)	976
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	1 cut(s)	1035
BcoDI	GTCTC	5 cut(s)	290, 338, 557, 1073, 1220
BfaI	CTAG	2 cut(s)	318, 792
BfmI	CTRYAG	1 cut(s)	729
BfrI	CTTAAG	1 cut(s)	1223
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	4 cut(s)	415, 735, 938, 1132
BlpI	GCTNAGC	1 cut(s)	738
BlsI	GCNGC	4 cut(s)	416, 736, 939, 1133
Bme1390I	CCNGG	1 cut(s)	1035
BmgT120I	GGNCC	2 cut(s)	809, 1037
BmiI	GGNNCC	3 cut(s)	107, 354, 637
BmrFI	CCNGG	1 cut(s)	1035
BmsI	GCATC	1 cut(s)	765
BpmI	CTGGAG	2 cut(s)	465, 1095
Bpu1102I	GCTNAGC	1 cut(s)	738
BsaAI	YACGTR	1 cut(s)	1062
BsaBI	GATNNNNATC	1 cut(s)	161
BsaI	GGTCTC	2 cut(s)	290, 557
BsaJI	CCNNGG	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	1 cut(s)	1297
Bse1I	ACTGG	4 cut(s)	107, 448, 743, 1237
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	1 cut(s)	589
BseGI	GGATG	3 cut(s)	925, 1006, 1168
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	1297
BseMII	CTCAG	3 cut(s)	78, 489, 752
BseNI	ACTGG	4 cut(s)	107, 448, 743, 1237
BseXI	GCAGC	3 cut(s)	401, 949, 1118
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	3 cut(s)	810, 1038, 1290
BshNI	GGYRCC	2 cut(s)	105, 635
BsiHKAI	GWGCWC	1 cut(s)	843
BsiWI	CGTACG	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	339, 1012
BslI	CCNNNNNNNGG	1 cut(s)	1297
BsmAI	GTCTC	5 cut(s)	290, 338, 557, 1073, 1220
BsmFI	GGGAC	2 cut(s)	339, 1012
BsnI	GGCC	3 cut(s)	810, 1038, 1290
Bso31I	GGTCTC	2 cut(s)	290, 557
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	5 cut(s)	247, 403, 481, 829, 1248
Bsp1720I	GCTNAGC	1 cut(s)	738
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	7 cut(s)	245, 297, 417, 734, 969, 1016, 1146
BspANI	GGCC	3 cut(s)	810, 1038, 1290
BspCNI	CTCAG	3 cut(s)	79, 490, 751
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	3 cut(s)	107, 354, 637
BspPI	GGATC	2 cut(s)	255, 837
BspT107I	GGYRCC	2 cut(s)	105, 635
BspTI	CTTAAG	1 cut(s)	1223
BspTNI	GGTCTC	2 cut(s)	290, 557
BsrBI	CCGCTC	1 cut(s)	299
BsrI	ACTGG	4 cut(s)	107, 448, 743, 1237
BssECI	CCNNGG	1 cut(s)	589
BssMI	GATC	5 cut(s)	247, 403, 481, 829, 1248
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	589
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	2 cut(s)	131, 1026
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	1223
BstBAI	YACGTR	1 cut(s)	1062
BstC8I	GCNNGC	2 cut(s)	538, 984
BstDEI	CTNAG	3 cut(s)	87, 498, 738
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	925, 1006, 1168
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	5 cut(s)	250, 406, 484, 832, 1251
BstMAI	GTCTC	5 cut(s)	290, 338, 557, 1073, 1220
BstMBI	GATC	5 cut(s)	247, 403, 481, 829, 1248
BstMWI	GCNNNNNNNGC	3 cut(s)	446, 734, 937
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	3 cut(s)	426, 937, 982
BstSCI	CCNGG	1 cut(s)	1033
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	3 cut(s)	401, 949, 1118
BstX2I	RGATCY	2 cut(s)	247, 481
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	2 cut(s)	247, 481
BsuRI	GGCC	3 cut(s)	810, 1038, 1290
BtgI	CCRYGG	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	925, 1006, 1168
BtsI	GCAGTG	1 cut(s)	1242
BtsIMutI	CAGTG	2 cut(s)	945, 1242
Cac8I	GCNNGC	2 cut(s)	538, 984
CaiI	CAGNNNCTG	2 cut(s)	362, 508
Cfr13I	GGNCC	2 cut(s)	809, 1037
Csp6I	GTAC	1 cut(s)	127
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	3 cut(s)	87, 498, 738
DpnI	GATC	5 cut(s)	249, 405, 483, 831, 1250
DpnII	GATC	5 cut(s)	247, 403, 481, 829, 1248
DraI	TTTAAA	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	1288
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	589
Eco31I	GGTCTC	2 cut(s)	290, 557
EcoRI	GAATTC	1 cut(s)	1270
EcoRII	CCWGG	1 cut(s)	1033
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaqI	GGGAC	2 cut(s)	339, 1012
FauI	CCCGC	2 cut(s)	410, 1023
Fnu4HI	GCNGC	4 cut(s)	415, 735, 938, 1132
FokI	GGATG	3 cut(s)	932, 993, 1175
Fsp4HI	GCNGC	4 cut(s)	415, 735, 938, 1132
FspBI	CTAG	2 cut(s)	318, 792
GluI	GCNGC	4 cut(s)	415, 735, 938, 1132
GsuI	CTGGAG	2 cut(s)	465, 1095
HaeIII	GGCC	3 cut(s)	810, 1038, 1290
HinfI	GANTC	6 cut(s)	157, 253, 331, 359, 972, 1142
HphI	GGTGA	2 cut(s)	248, 319
Hpy166II	GTNNAC	2 cut(s)	860, 1181
Hpy188I	TCNGA	6 cut(s)	76, 88, 136, 252, 499, 958
Hpy188III	TCNNGA	6 cut(s)	179, 356, 623, 1000, 1074, 1261
Hpy8I	GTNNAC	2 cut(s)	860, 1181
Hpy99I	CGWCG	2 cut(s)	101, 307
HpyAV	CCTTC	4 cut(s)	56, 373, 640, 1267
HpyCH4III	ACNGT	2 cut(s)	131, 1026
HpyCH4IV	ACGT	3 cut(s)	125, 628, 1061
HpyCH4V	TGCA	5 cut(s)	931, 937, 1050, 1094, 1158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	446, 734, 937
HpyF3I	CTNAG	3 cut(s)	87, 498, 738
HpySE526I	ACGT	3 cut(s)	125, 628, 1061
Kzo9I	GATC	5 cut(s)	247, 403, 481, 829, 1248
LmnI	GCTCC	3 cut(s)	304, 383, 446
Lsp1109I	GCAGC	3 cut(s)	401, 949, 1118
LweI	GCATC	1 cut(s)	765
MaeI	CTAG	2 cut(s)	318, 792
MaeII	ACGT	3 cut(s)	125, 628, 1061
MaeIII	GTNAC	6 cut(s)	187, 388, 472, 518, 670, 941
MalI	GATC	5 cut(s)	249, 405, 483, 831, 1250
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	5 cut(s)	247, 403, 481, 829, 1248
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	247, 481
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	7 cut(s)	459, 572, 675, 952, 1100, 1237, 1270
MlyI	GAGTC	2 cut(s)	247, 340
MnlI	CCTC	9 cut(s)	28, 138, 147, 448, 503, 718, 1029, 1041, 1291
MseI	TTAA	5 cut(s)	168, 462, 582, 719, 1224
MslI	CAYNNNNRTG	1 cut(s)	1126
MspA1I	CMGCKG	1 cut(s)	1148
MspCI	CTTAAG	1 cut(s)	1223
MspR9I	CCNGG	1 cut(s)	1035
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	1035
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	446, 734, 937
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	5 cut(s)	247, 403, 481, 829, 1248
NlaIV	GGNNCC	3 cut(s)	107, 354, 637
NmeAIII	GCCGAG	1 cut(s)	416
NmuCI	GTSAC	2 cut(s)	518, 670
NspI	RCATGY	3 cut(s)	426, 937, 982
PcsI	WCGNNNNNNNCGW	2 cut(s)	342, 437
PfeI	GAWTC	4 cut(s)	157, 359, 972, 1142
Pfl23II	CGTACG	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	330
PkrI	GCNGC	4 cut(s)	416, 736, 939, 1133
PleI	GAGTC	2 cut(s)	247, 339
PpsI	GAGTC	2 cut(s)	247, 339
Ppu21I	YACGTR	1 cut(s)	1062
Psp6I	CCWGG	1 cut(s)	1033
PspGI	CCWGG	1 cut(s)	1033
PspLI	CGTACG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	107, 354, 637
PspPI	GGNCC	2 cut(s)	809, 1037
PstNI	CAGNNNCTG	2 cut(s)	362, 508
PsuI	RGATCY	2 cut(s)	247, 481
PsyI	GACNNNGTC	1 cut(s)	330
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	1126
SaqAI	TTAA	5 cut(s)	168, 462, 582, 719, 1224
SatI	GCNGC	4 cut(s)	415, 735, 938, 1132
Sau3AI	GATC	5 cut(s)	247, 403, 481, 829, 1248
Sau96I	GGNCC	2 cut(s)	809, 1037
SchI	GAGTC	2 cut(s)	247, 340
ScrFI	CCNGG	1 cut(s)	1035
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	1 cut(s)	765
SfcI	CTRYAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	1126
SmlI	CTYRAG	1 cut(s)	1223
SmoI	CTYRAG	1 cut(s)	1223
Sse9I	AATT	7 cut(s)	459, 572, 675, 952, 1100, 1237, 1270
SsiI	CCGC	7 cut(s)	245, 297, 417, 734, 969, 1016, 1146
SspI	AATATT	1 cut(s)	801
SspMI	CTAG	2 cut(s)	318, 792
StyD4I	CCNGG	1 cut(s)	1033
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	131, 1026
TaiI	ACGT	3 cut(s)	128, 631, 1064
TaqI	TCGA	2 cut(s)	96, 818
TasI	AATT	7 cut(s)	459, 572, 675, 952, 1100, 1237, 1270
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	4 cut(s)	157, 359, 972, 1142
Tru1I	TTAA	5 cut(s)	168, 462, 582, 719, 1224
Tru9I	TTAA	5 cut(s)	168, 462, 582, 719, 1224
TscAI	CASTG	2 cut(s)	952, 1249
TseFI	GTSAC	2 cut(s)	518, 670
TseI	GCWGC	3 cut(s)	414, 937, 1131
Tsp45I	GTSAC	2 cut(s)	518, 670
TspDTI	ATGAA	3 cut(s)	51, 978, 1059
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	952, 1249
Tth111I	GACNNNGTC	1 cut(s)	330
Vha464I	CTTAAG	1 cut(s)	1223
XapI	RAATTY	3 cut(s)	572, 952, 1270
XceI	RCATGY	3 cut(s)	426, 937, 982
XspI	CTAG	2 cut(s)	318, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.