Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Reverse (-)

61089186 .. 61092344

Gene Structure 3159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAACCCTTTGTTGCTTTGTCTTCTAACTCTTCTTCTTGTCTCCCATCCTTGCCTTTCTTCTTCCGCTTATTCTTCTTCTTCATCTGAACTGTTTGAAGCTTGGTGCAAACAGTATGGCAAGTCATACTCTTCAGAACAAGAAAAGCTCTACAGGCTTAGTGTGTTTGAGCAAAATCTTGCCTTCATTACTCAACACAATGATTTGGGCAATTCTTCTTACACCCTTTCTCTCAATTCATTTTCTGATCTTGCCCACCACGAGTTTAAGGCCTCTCGGTTAGGATTTTCGCCTACGTTTCTCAGACTTAACCGGAAATCAGACCCAAAACCCAGTGCGGTTCGTGATGTTCCTTCTTCGATTGATTGGAGGAAGAATGGAGCTGTGACCAATGTTAAAGATCAAGGCAGTTGTGGTGCTTGTTGGTCCTTTTCAGCAACTGGTGCCATTGAAGGTATCAACAAGATTGTCACTGGATCACTTGTCAGCCTCTCCGAACAAGAGTTGATTGATTGTGACAGAGTTTATCCAAATAGCGGCTGTGATGGTGGACTGATGGACGATGCATTTCAGTTTATCATAGATAACAATGGGATTGACACTGAGGAGGATTACCCATATCGAGGTGTGGATGGCACTTGCAATAAGCAAAAGTTGAAGCGGCATGTTGTGACAATTGATGGCTATACTGATGTGCCCGCAAATGATGAGGAACAACTCCTACAGGCTGTGGCAAGGCAACCTGTGAGTGTAGGTATAGCTGGCAGTGGCAGGGAATTTCAGTTCTACTCAAAGGGGATTTTTGCTGGTCCTTGTTCAACTTCTTTGGATCATGCTGTATTAATTGTAGGTTATGGTTCAGAAAATGGGGTGAACTATTGGATTGTAAAGAATTCATGGGGTAAGAACTGGGGAATGAATGGCTATATTCACATGCTGCGTGATCATAGCAATTCCAAAGGGGTCTGCGGAATCAACATGTTGGCTTCATATCCAACAAAGACTGGGGAAAATCCTCCTTTTCCCCCACCTTCCCCTCCTCCAGGTCCAACTAAATGTGATATCTTTTCCAAGTGCGGAGTTGGGGAAACCTGCTGCTGTGCAAAGAAGTTTTTTGGAATATGCCTTTCTTGGAGATGCTGCGAGCTAGCCTCTGCTGTTTGTTGTCAGGATCGACTTCACTGTTGCCCCCATGATTATTCTATTTGTGATACAGAGAGGAACTTCTGCCTCCAGGCTAACGGGAATTTAACAATGAAAGCAAATGAGAGTAGAGGCAGTTTGGGAAAGTCAAGCCGATCGAAAGCAAAGTTGTTCTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

441

Amino Acids

48.46

Weight (kDa)

6.55

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	32 - 89	1.1e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	117 - 333	5.7e-84	Papain family cysteine protease
Granulin	PF00396	364 - 411	1.9e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1100
AccB1I	GGYRCC	1 cut(s)	443
AciI	CCGC	7 cut(s)	66, 338, 537, 661, 699, 969, 1077
AclWI	GGATC	3 cut(s)	484, 837, 1179
AcsI	RAATTY	3 cut(s)	776, 892, 1246
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
AflIII	ACRYGT	1 cut(s)	978
AgsI	TTSAA	4 cut(s)	98, 452, 658, 819
AjnI	CCWGG	2 cut(s)	1042, 1233
AloI	GAACNNNNNNTCC	2 cut(s)	767, 799
AluBI	AGCT	5 cut(s)	101, 148, 383, 761, 1147
AluI	AGCT	5 cut(s)	101, 148, 383, 761, 1147
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	3 cut(s)	484, 837, 1179
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	3 cut(s)	937, 1095, 1140
ApoI	RAATTY	3 cut(s)	776, 892, 1246
AseI	ATTAAT	1 cut(s)	842
AspS9I	GGNCC	3 cut(s)	426, 809, 1046
AsuHPI	GGTGA	1 cut(s)	883
AsuNHI	GCTAGC	1 cut(s)	1147
AvaII	GGWCC	3 cut(s)	426, 809, 1046
BaeGI	GKGCMC	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	443
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	924, 1082, 1127
BccI	CCATC	5 cut(s)	54, 539, 550, 626, 674
BciT130I	CCWGG	2 cut(s)	1044, 1235
BclI	TGATCA	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	1148
BfmI	CTRYAG	2 cut(s)	151, 722
BfuAI	ACCTGC	1 cut(s)	1100
BisI	GCNGC	5 cut(s)	538, 662, 938, 1096, 1141
BlsI	GCNGC	5 cut(s)	539, 663, 939, 1097, 1142
Bme1390I	CCNGG	2 cut(s)	1044, 1235
Bme18I	GGWCC	3 cut(s)	426, 809, 1046
BmgT120I	GGNCC	3 cut(s)	426, 809, 1046
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	2 cut(s)	1044, 1235
BmrI	ACTGGG	3 cut(s)	327, 919, 1014
BmsI	GCATC	2 cut(s)	553, 1127
BmtI	GCTAGC	1 cut(s)	1151
BmuI	ACTGGG	3 cut(s)	327, 919, 1014
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	1136, 1168
BpmI	CTGGAG	2 cut(s)	1026, 1217
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
Bse1I	ACTGG	5 cut(s)	333, 445, 478, 914, 1009
BseBI	CCWGG	2 cut(s)	1044, 1235
BseGI	GGATG	2 cut(s)	46, 637
BseLI	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
BseMII	CTCAG	2 cut(s)	316, 594
BseNI	ACTGG	5 cut(s)	333, 445, 478, 914, 1009
BseRI	GAGGAG	2 cut(s)	620, 1029
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	924, 1082, 1127
Bsh1285I	CGRYCG	1 cut(s)	1301
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	1301
BsiSI	CCGG	1 cut(s)	313
BslI	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
BspACI	CCGC	7 cut(s)	66, 338, 537, 661, 699, 969, 1077
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	315, 595
BspLI	GGNNCC	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	1100
BspOI	GCTAGC	1 cut(s)	1151
BspPI	GGATC	3 cut(s)	484, 837, 1179
BspT107I	GGYRCC	1 cut(s)	443
BsrI	ACTGG	5 cut(s)	333, 445, 478, 914, 1009
BssMI	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
BssSI	CACGAG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	1044, 1235
Bst4CI	ACNGT	3 cut(s)	93, 114, 1184
Bst6I	CTCTTC	2 cut(s)	36, 136
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	699, 763, 1145, 1149
BstDEI	CTNAG	3 cut(s)	158, 302, 603
BstENI	CCTNNNNNAGG	1 cut(s)	1041
BstF5I	GGATG	2 cut(s)	46, 637
BstKTI	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
BstMCI	CGRYCG	1 cut(s)	1301
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 443
BstNI	CCWGG	2 cut(s)	1044, 1235
BstNSI	RCATGY	3 cut(s)	668, 937, 982
BstSCI	CCNGG	2 cut(s)	1042, 1233
BstSFI	CTRYAG	2 cut(s)	151, 722
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	924, 1082, 1127
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	46, 637
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	5 cut(s)	340, 471, 600, 772, 1180
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	4 cut(s)	699, 763, 1145, 1149
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	426, 809, 1046
CviAII	CATG	6 cut(s)	665, 833, 897, 934, 979, 1193
DdeI	CTNAG	3 cut(s)	158, 302, 603
DpnI	GATC	7 cut(s)	249, 402, 478, 831, 945, 1173, 1300
DpnII	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
Eam1104I	CTCTTC	2 cut(s)	36, 136
EarI	CTCTTC	2 cut(s)	36, 136
Eco147I	AGGCCT	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	1063
Eco47I	GGWCC	3 cut(s)	426, 809, 1046
Eco57I	CTGAAG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	1041
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	2 cut(s)	1042, 1233
EcoRV	GATATC	1 cut(s)	1063
EcoT22I	ATGCAT	1 cut(s)	568
FaeI	CATG	6 cut(s)	668, 836, 900, 937, 982, 1196
FatI	CATG	6 cut(s)	664, 832, 896, 933, 978, 1192
FauI	CCCGC	1 cut(s)	706
FbaI	TGATCA	1 cut(s)	943
Fnu4HI	GCNGC	5 cut(s)	538, 662, 938, 1096, 1141
FokI	GGATG	2 cut(s)	33, 644
Fsp4HI	GCNGC	5 cut(s)	538, 662, 938, 1096, 1141
FspBI	CTAG	1 cut(s)	1148
GluI	GCNGC	5 cut(s)	538, 662, 938, 1096, 1141
GsuI	CTGGAG	2 cut(s)	1026, 1217
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	6 cut(s)	668, 836, 900, 937, 982, 1196
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	1 cut(s)	972
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	1 cut(s)	883
Hpy166II	GTNNAC	2 cut(s)	551, 874
Hpy188I	TCNGA	7 cut(s)	88, 136, 247, 305, 322, 496, 862
Hpy188III	TCNNGA	2 cut(s)	344, 1169
Hpy8I	GTNNAC	2 cut(s)	551, 874
HpyAV	CCTTC	4 cut(s)	193, 363, 446, 1041
HpyCH4III	ACNGT	3 cut(s)	93, 114, 1184
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	108, 566, 642, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 443
HpyF3I	CTNAG	3 cut(s)	158, 302, 603
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	6 cut(s)	668, 836, 900, 937, 982, 1196
Ksp22I	TGATCA	1 cut(s)	943
Kzo9I	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
LmnI	GCTCC	1 cut(s)	380
Lsp1109I	GCAGC	3 cut(s)	924, 1082, 1127
LweI	GCATC	2 cut(s)	553, 1127
MaeI	CTAG	1 cut(s)	1148
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	4 cut(s)	385, 469, 515, 670
MalI	GATC	7 cut(s)	249, 402, 478, 831, 945, 1173, 1300
MboI	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
MfeI	CAATTG	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	8 cut(s)	211, 235, 675, 776, 843, 892, 952, 1246
MmeI	TCCRAC	2 cut(s)	1019, 1073
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	5 cut(s)	267, 309, 396, 842, 1250
MspI	CCGG	1 cut(s)	313
MspR9I	CCNGG	2 cut(s)	1044, 1235
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	1044, 1235
MwoI	GCNNNNNNNGC	2 cut(s)	154, 443
NdeII	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
NheI	GCTAGC	1 cut(s)	1147
NlaIII	CATG	6 cut(s)	668, 836, 900, 937, 982, 1196
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	4 cut(s)	385, 469, 515, 670
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	3 cut(s)	668, 937, 982
PceI	AGGCCT	1 cut(s)	272
PciI	ACATGT	1 cut(s)	978
PfeI	GAWTC	1 cut(s)	972
PkrI	GCNGC	5 cut(s)	539, 663, 939, 1097, 1142
Ple19I	CGATCG	1 cut(s)	1301
PscI	ACATGT	1 cut(s)	978
PshBI	ATTAAT	1 cut(s)	842
Psp6I	CCWGG	2 cut(s)	1042, 1233
PspGI	CCWGG	2 cut(s)	1042, 1233
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	426, 809, 1046
PsrI	GAACNNNNNNTAC	2 cut(s)	705, 737
PstNI	CAGNNNCTG	1 cut(s)	440
PvuI	CGATCG	1 cut(s)	1301
SaqAI	TTAA	5 cut(s)	267, 309, 396, 842, 1250
SatI	GCNGC	5 cut(s)	538, 662, 938, 1096, 1141
Sau3AI	GATC	7 cut(s)	247, 400, 476, 829, 943, 1171, 1298
Sau96I	GGNCC	3 cut(s)	426, 809, 1046
ScrFI	CCNGG	2 cut(s)	1044, 1235
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	2 cut(s)	553, 1127
SfcI	CTRYAG	2 cut(s)	151, 722
SinI	GGWCC	3 cut(s)	426, 809, 1046
Sse9I	AATT	8 cut(s)	211, 235, 675, 776, 843, 892, 952, 1246
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	7 cut(s)	66, 338, 537, 661, 699, 969, 1077
SspMI	CTAG	1 cut(s)	1148
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	1042, 1233
TaaI	ACNGT	3 cut(s)	93, 114, 1184
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	4 cut(s)	359, 622, 1174, 1301
TasI	AATT	8 cut(s)	211, 235, 675, 776, 843, 892, 952, 1246
TauI	GCSGC	2 cut(s)	540, 664
TfiI	GAWTC	1 cut(s)	972
Tru1I	TTAA	5 cut(s)	267, 309, 396, 842, 1250
Tru9I	TTAA	5 cut(s)	267, 309, 396, 842, 1250
TscAI	CASTG	5 cut(s)	340, 478, 607, 772, 1187
TseFI	GTSAC	4 cut(s)	385, 469, 515, 670
TseI	GCWGC	3 cut(s)	937, 1095, 1140
Tsp45I	GTSAC	4 cut(s)	385, 469, 515, 670
TspDTI	ATGAA	8 cut(s)	17, 72, 175, 228, 885, 932, 978, 1271
TspRI	CASTG	5 cut(s)	340, 478, 607, 772, 1187
VpaK11BI	GGWCC	3 cut(s)	426, 809, 1046
VspI	ATTAAT	1 cut(s)	842
XagI	CCTNNNNNAGG	1 cut(s)	1041
XapI	RAATTY	3 cut(s)	776, 892, 1246
XceI	RCATGY	3 cut(s)	668, 937, 982
XspI	CTAG	1 cut(s)	1148
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.