Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Reverse (-)

28035512 .. 28038635

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAACCCTCTCTTGCTTTCACTTCTAACTCTTCTTCTTCTTCTCTCCCATCCTTGCCTTTCTTCTTCTTCTTCTTCTTCTTCCTCTGAGCTGTTTGAAGCTTGGTGCAAACAGTATGGCAAGTCATACTCTTCGCAAGAAGAAAAGCTCTACAGGCTTAGTCTGTTTGAGCAAAACCTTGCCTTCATTACCCAGCACAACGATTTGGGCAATTCTTCTTATACCCTTTCTCTCAATTCCTTCTCTGATCTCACCCACCATGAGTTTAAGGCATCTCGCTTAGGATTTTCGCCTACGTTTCTCAGACTTTACCGGAAATCAGACCCGAAACCCAGTGTGGTTCGTCATGTTCCTTCTTCGATTGATTGGAGGAAGAATGGAGCTGTGACCAATGTTAAAGACCAAGGCAGCTGTGGTGCTTGTTGGTCCTTCTCAGCTACTGGTGCAATTGAAGGCATCAACAAGATTGTCACAGGATCACTGGTCAGCCTCTCCGAACAAGAGTTAATTGATTGCGACAGAGTTTATCCAAATAGTGGCTGCAATGGCGGACTGATGGACGATGCTTTTCAGTTTATCATAGATAACAATGGGATTGACACTGAGGAGGATTACCCTTATCAAGGAGCGGATGGCACTTGCAATAAGCAAAAGTTGAAGAGGCATGTTGTGACAATTGATGGCTATACTGATGTGCCCGCAAATAATGAGGAACAACTCCTAAAGGCTGTGGCAACTCAACCTGTGAGTGTAGGCATAGCTGGCAGTGGCAGGGAATTTCAGTTCTACTCGAAGGGGATATTTGCTGGCCCTTGTTCAACTACTTTGGATCATGCTGTATTAATTGTAGGTTATGGTTCAGAAAATGGGGTGGACTATTGGATTGTAAAGAATTCATGGGGGAAGAACTGGGGAATGAATGGCTATATCCACATACTGCGGGATCATAGCAATTCCAAAGGGCTCTGCGGAATCAACATGTTGGCTTCATATCCAACAAAGACTGGGGAAAATCCTCCTTTTCCCCCGCCTTCCCCTCCTCCAGGTCCAACAAAATGTGATTTATTTTCTAAGTGTGGAGTTGGGGAAACCTGCTGTTGTGCAAGGAAGATTTTGGGAATATGCCTCTCTTGGAGATGCTGTGAGTTTACCTCTGCAGTTTGTTGTAAGGATCGACTTCACTGTTGTCCCCATGATTATCCTATTTGTGATACAGAGAGGAACTACTGCCTCCAGGCTAACGGCAACTTAACAATGAGAGCGAATGAGATTAGAGGCAGTTTGAGAAAGTCAAGCCGGTCGAAAGCAAAGTTGTCCTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

442

Amino Acids

48.61

Weight (kDa)

7.42

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	32 - 89	1.1e-21	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	117 - 333	1.4e-84	Papain family cysteine protease
Granulin	PF00396	364 - 411	1.6e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1100
AccB7I	CCANNNNNTGG	1 cut(s)	536
AccBSI	CCGCTC	1 cut(s)	629
AciI	CCGC	6 cut(s)	549, 629, 699, 940, 969, 1028
AclWI	GGATC	4 cut(s)	484, 837, 951, 1179
AcsI	RAATTY	2 cut(s)	776, 892
AfiI	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
AflIII	ACRYGT	1 cut(s)	978
AgsI	TTSAA	4 cut(s)	98, 452, 658, 819
AjnI	CCWGG	2 cut(s)	1042, 1233
AloI	GAACNNNNNNTCC	2 cut(s)	767, 799
AluBI	AGCT	7 cut(s)	91, 101, 148, 383, 411, 437, 761
AluI	AGCT	7 cut(s)	91, 101, 148, 383, 411, 437, 761
AlwI	GGATC	4 cut(s)	484, 837, 951, 1179
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	808
ApeKI	GCWGC	2 cut(s)	408, 540
ApoI	RAATTY	2 cut(s)	776, 892
AseI	ATTAAT	1 cut(s)	842
AspS9I	GGNCC	3 cut(s)	426, 809, 1046
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	426, 1046
BaeGI	GKGCMC	1 cut(s)	699
BanII	GRGCYC	1 cut(s)	966
BbvI	GCAGC	2 cut(s)	420, 527
BccI	CCATC	4 cut(s)	57, 550, 626, 674
BceAI	ACGGC	1 cut(s)	1258
BciT130I	CCWGG	2 cut(s)	1044, 1235
BfmI	CTRYAG	2 cut(s)	151, 1155
BfuAI	ACCTGC	1 cut(s)	1100
BisI	GCNGC	2 cut(s)	409, 541
BlsI	GCNGC	2 cut(s)	410, 542
Bme1390I	CCNGG	2 cut(s)	1044, 1235
Bme18I	GGWCC	2 cut(s)	426, 1046
BmgT120I	GGNCC	3 cut(s)	426, 809, 1046
BmrFI	CCNGG	2 cut(s)	1044, 1235
BmrI	ACTGGG	3 cut(s)	327, 919, 1014
BmsI	GCATC	4 cut(s)	281, 465, 553, 1127
BmuI	ACTGGG	3 cut(s)	327, 919, 1014
BplI	GAGNNNNNCTC	2 cut(s)	1136, 1168
BpmI	CTGGAG	2 cut(s)	1026, 1217
Bpu10I	CCTNAGC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	1126, 1156
Bsc4I	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
Bse118I	RCCGGY	1 cut(s)	1296
Bse1I	ACTGG	6 cut(s)	333, 445, 486, 914, 1009, 1325
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	1044, 1235
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	49, 637
BseLI	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	4 cut(s)	78, 316, 447, 594
BseNI	ACTGG	6 cut(s)	333, 445, 486, 914, 1009, 1325
BseRI	GAGGAG	2 cut(s)	620, 1029
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	2 cut(s)	420, 527
BseYI	CCCAGC	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	1301
BshFI	GGCC	1 cut(s)	810
BsiEI	CGRYCG	1 cut(s)	1301
BsiSI	CCGG	2 cut(s)	313, 1297
BslFI	GGGAC	1 cut(s)	1173
BslI	CCNNNNNNNGG	3 cut(s)	536, 623, 1043
BsmFI	GGGAC	1 cut(s)	1173
BsnI	GGCC	1 cut(s)	810
Bsp1286I	GDGCHC	2 cut(s)	699, 966
Bsp143I	GATC	5 cut(s)	247, 476, 829, 943, 1171
BspACI	CCGC	6 cut(s)	549, 629, 699, 940, 969, 1028
BspANI	GGCC	1 cut(s)	810
BspCNI	CTCAG	4 cut(s)	79, 315, 446, 595
BspMAI	CTGCAG	1 cut(s)	1159
BspMI	ACCTGC	1 cut(s)	1100
BspPI	GGATC	4 cut(s)	484, 837, 951, 1179
BsrBI	CCGCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	1296
BsrI	ACTGG	6 cut(s)	333, 445, 486, 914, 1009, 1325
BssAI	RCCGGY	1 cut(s)	1296
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	5 cut(s)	247, 476, 829, 943, 1171
BssT1I	CCWWGG	1 cut(s)	403
Bst2UI	CCWGG	2 cut(s)	1044, 1235
Bst4CI	ACNGT	2 cut(s)	114, 1184
Bst6I	CTCTTC	3 cut(s)	36, 136, 653
BstC8I	GCNNGC	3 cut(s)	699, 763, 808
BstDEI	CTNAG	7 cut(s)	87, 158, 280, 302, 433, 603, 1071
BstENI	CCTNNNNNAGG	2 cut(s)	621, 1041
BstF5I	GGATG	2 cut(s)	49, 637
BstKTI	GATC	5 cut(s)	250, 479, 832, 946, 1174
BstMBI	GATC	5 cut(s)	247, 476, 829, 943, 1171
BstMCI	CGRYCG	1 cut(s)	1301
BstMWI	GCNNNNNNNGC	4 cut(s)	154, 443, 546, 762
BstNI	CCWGG	2 cut(s)	1044, 1235
BstNSI	RCATGY	2 cut(s)	668, 982
BstSCI	CCNGG	2 cut(s)	1042, 1233
BstSFI	CTRYAG	2 cut(s)	151, 1155
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	2 cut(s)	420, 527
BsuRI	GGCC	1 cut(s)	810
BtsCI	GGATG	2 cut(s)	49, 637
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	5 cut(s)	340, 479, 600, 772, 1180
BveI	ACCTGC	1 cut(s)	1100
Cac8I	GCNNGC	3 cut(s)	699, 763, 808
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr10I	RCCGGY	1 cut(s)	1296
Cfr13I	GGNCC	3 cut(s)	426, 809, 1046
CviAII	CATG	7 cut(s)	260, 347, 665, 833, 897, 979, 1193
DdeI	CTNAG	7 cut(s)	87, 158, 280, 302, 433, 603, 1071
DpnI	GATC	5 cut(s)	249, 478, 831, 945, 1173
DpnII	GATC	5 cut(s)	247, 476, 829, 943, 1171
Eam1104I	CTCTTC	3 cut(s)	36, 136, 653
EarI	CTCTTC	3 cut(s)	36, 136, 653
EciI	GGCGGA	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	426, 1046
EcoNI	CCTNNNNNAGG	2 cut(s)	621, 1041
EcoRI	GAATTC	1 cut(s)	892
EcoRII	CCWGG	2 cut(s)	1042, 1233
EcoT14I	CCWWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	966
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	7 cut(s)	263, 350, 668, 836, 900, 982, 1196
FaqI	GGGAC	1 cut(s)	1173
FatI	CATG	7 cut(s)	259, 346, 664, 832, 896, 978, 1192
FauI	CCCGC	3 cut(s)	706, 933, 1035
Fnu4HI	GCNGC	2 cut(s)	409, 541
FokI	GGATG	2 cut(s)	36, 644
FriOI	GRGCYC	1 cut(s)	966
Fsp4HI	GCNGC	2 cut(s)	409, 541
GluI	GCNGC	2 cut(s)	409, 541
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	2 cut(s)	1026, 1217
HaeIII	GGCC	1 cut(s)	810
HapII	CCGG	2 cut(s)	313, 1297
Hin1II	CATG	7 cut(s)	263, 350, 668, 836, 900, 982, 1196
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	1 cut(s)	972
HpaII	CCGG	2 cut(s)	313, 1297
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	874, 1149
Hpy188I	TCNGA	6 cut(s)	88, 247, 305, 322, 496, 862
Hpy8I	GTNNAC	2 cut(s)	874, 1149
HpyAV	CCTTC	7 cut(s)	193, 250, 363, 439, 446, 787, 1041
HpyCH4III	ACNGT	2 cut(s)	114, 1184
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	6 cut(s)	108, 446, 543, 642, 1103, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	154, 443, 546, 762
HpyF3I	CTNAG	7 cut(s)	87, 158, 280, 302, 433, 603, 1071
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	7 cut(s)	263, 350, 668, 836, 900, 982, 1196
Kzo9I	GATC	5 cut(s)	247, 476, 829, 943, 1171
LmnI	GCTCC	2 cut(s)	380, 626
Lsp1109I	GCAGC	2 cut(s)	420, 527
LweI	GCATC	4 cut(s)	281, 465, 553, 1127
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	385, 469, 670
MalI	GATC	5 cut(s)	249, 478, 831, 945, 1173
MbiI	CCGCTC	1 cut(s)	629
MboI	GATC	5 cut(s)	247, 476, 829, 943, 1171
MfeI	CAATTG	2 cut(s)	447, 675
MhlI	GDGCHC	2 cut(s)	699, 966
MluCI	AATT	9 cut(s)	211, 235, 447, 507, 675, 776, 843, 892, 952
MmeI	TCCRAC	2 cut(s)	1019, 1073
MseI	TTAA	5 cut(s)	267, 396, 506, 842, 1250
MspA1I	CMGCKG	1 cut(s)	411
MspI	CCGG	2 cut(s)	313, 1297
MspR9I	CCNGG	2 cut(s)	1044, 1235
MunI	CAATTG	2 cut(s)	447, 675
MvaI	CCWGG	2 cut(s)	1044, 1235
MwoI	GCNNNNNNNGC	4 cut(s)	154, 443, 546, 762
NdeII	GATC	5 cut(s)	247, 476, 829, 943, 1171
NlaIII	CATG	7 cut(s)	263, 350, 668, 836, 900, 982, 1196
NmuCI	GTSAC	3 cut(s)	385, 469, 670
NspI	RCATGY	2 cut(s)	668, 982
PciI	ACATGT	1 cut(s)	978
PfeI	GAWTC	1 cut(s)	972
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	410, 542
PscI	ACATGT	1 cut(s)	978
PshBI	ATTAAT	1 cut(s)	842
Psp6I	CCWGG	2 cut(s)	1042, 1233
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	2 cut(s)	1042, 1233
PspPI	GGNCC	3 cut(s)	426, 809, 1046
PstI	CTGCAG	1 cut(s)	1159
PstNI	CAGNNNCTG	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	267, 396, 506, 842, 1250
SatI	GCNGC	2 cut(s)	409, 541
Sau3AI	GATC	5 cut(s)	247, 476, 829, 943, 1171
Sau96I	GGNCC	3 cut(s)	426, 809, 1046
ScrFI	CCNGG	2 cut(s)	1044, 1235
SduI	GDGCHC	2 cut(s)	699, 966
SfaNI	GCATC	4 cut(s)	281, 465, 553, 1127
SfcI	CTRYAG	2 cut(s)	151, 1155
SinI	GGWCC	2 cut(s)	426, 1046
Sse9I	AATT	9 cut(s)	211, 235, 447, 507, 675, 776, 843, 892, 952
SsiI	CCGC	6 cut(s)	549, 629, 699, 940, 969, 1028
StyD4I	CCNGG	2 cut(s)	1042, 1233
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	114, 1184
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	4 cut(s)	359, 791, 1174, 1301
TasI	AATT	9 cut(s)	211, 235, 447, 507, 675, 776, 843, 892, 952
TfiI	GAWTC	1 cut(s)	972
Tru1I	TTAA	5 cut(s)	267, 396, 506, 842, 1250
Tru9I	TTAA	5 cut(s)	267, 396, 506, 842, 1250
TscAI	CASTG	5 cut(s)	340, 486, 607, 772, 1187
TseFI	GTSAC	3 cut(s)	385, 469, 670
TseI	GCWGC	2 cut(s)	408, 540
Tsp45I	GTSAC	3 cut(s)	385, 469, 670
TspDTI	ATGAA	5 cut(s)	17, 175, 885, 932, 978
TspRI	CASTG	5 cut(s)	340, 486, 607, 772, 1187
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	426, 1046
VspI	ATTAAT	1 cut(s)	842
XagI	CCTNNNNNAGG	2 cut(s)	621, 1041
XapI	RAATTY	2 cut(s)	776, 892
XceI	RCATGY	2 cut(s)	668, 982
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.