Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Reverse (-)

62167962 .. 62170679

Gene Structure 2718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAACCCTTTGTTGCTTTGTCTTCTAACTCTTCTTCTTGTCTCCCATCCTTGCCTTTCTTCTTCTTCTTCATCTGAACTGTTTGAAGCTTGGTGCAAACAGTATGGCAAGTCATACTCTTCAGAACAAGAAAAGCTCTACAGGCTTAGTGTGTTTGAGCAAAATCTTGCCTTCATTACTCAACACAATGATTTGGGCAATTCTTCTTACACCCTTTCTCTTAATTCATTTTCTGATCTTGCCCACCACGAGTTTAAGGCCTCTCTGTTAGGATTTTCGCCTACGTTTCTCAGACTAAACCGGAAATCAGACCCAAAACCCAGTGCGGTTCGTGATGTTCCTTCTTCGATTGATTGGAGGAAGAATGGAGCTGTGAGCAATGTTAAAGATCAAGGCAGTTGTGGTGCTTGTTGGTCCTTTTCAGCAACTGGTGCCATTGAAGGTATCAACAAGATTGTCACTGGATCGCTTGTCAGCCTCTCCGAACAAGAGTTGATTGATTGTGACAGAGTTTATCCAAATAGCGGCTGTGATGGTGGACTGATGGACGATGCATTTCAGTTTATCATAGATAACAATGGGATTGACACTGAGGAGGATTACCCGTATCGAGGTGTGGATGGCACTTGCAATAAGCAAAAGTTGAAGCGGCATGTTGTGACAATTGATGGCTATACTGATGTGCCCGCAAATGATGAGGAACAACTCCTACAGGCTGTGGCAAGGCAACCTGTGAGTGTAGGTATAGCTGGCAGTGGCAGGGAATTTCAGTTCTACTCAAAGGGGATTTTTGCTGGTCCTTGTTCAACTTCTTTGGATCATGCTGTATTAATTGTAGGTTATGGTTCAGAAAATGGGGTGAACTATTGGATTGTAAAGAATTCATGGGGTAAGAACTGGGGAATGAATGGCTATATTCACATGCTGCGTGATCATAGCAATTCCAAAGGGGTCTGCGGAATCAACATGTTGGCTTCATATCCAACAAAGACTGGGGAAAACCCTCCTTTTCCCCCGCCTTCCCCTCCTCCAGGTCCAACTAAATGTGATATCTTTTCCAAGTGTGGAGTTGGGGAAACCTGCTGCTGTGCAAAGAAGTTTTTTGGAATATGCCTTTCTTGGAGATGCTGCGAGCTAGCCTCTGCTGTTTGCTGTCAGGATCGACTTCACTGTTGCCCCCATGATTATCCTATTTGTGATACAGAGAGGAACTTCTGCCTCCAGGCTAACGGGAATTTAACAATGAAAGCAAATGAGAGTAGAGGCAGTTTGGGAAAGTCAAGCCGATCGAAAGCAAAGTTGTTCTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

437

Amino Acids

48.0

Weight (kDa)

6.37

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	28 - 85	1.1e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	113 - 329	1.3e-83	Papain family cysteine protease
Granulin	PF00396	360 - 407	1.7e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1088
AccB1I	GGYRCC	1 cut(s)	431
AciI	CCGC	6 cut(s)	326, 525, 649, 687, 957, 1016
AclWI	GGATC	3 cut(s)	472, 825, 1167
AcsI	RAATTY	3 cut(s)	764, 880, 1234
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	524, 611, 1031
AflIII	ACRYGT	1 cut(s)	966
AgsI	TTSAA	4 cut(s)	86, 440, 646, 807
AjnI	CCWGG	2 cut(s)	1030, 1221
AloI	GAACNNNNNNTCC	2 cut(s)	755, 787
AluBI	AGCT	5 cut(s)	89, 136, 371, 749, 1135
AluI	AGCT	5 cut(s)	89, 136, 371, 749, 1135
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	3 cut(s)	472, 825, 1167
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	3 cut(s)	925, 1083, 1128
ApoI	RAATTY	3 cut(s)	764, 880, 1234
AseI	ATTAAT	1 cut(s)	830
AspS9I	GGNCC	3 cut(s)	414, 797, 1034
AsuHPI	GGTGA	1 cut(s)	871
AsuNHI	GCTAGC	1 cut(s)	1135
AvaII	GGWCC	3 cut(s)	414, 797, 1034
BaeGI	GKGCMC	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	431
BauI	CACGAG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	912, 1070, 1115
BccI	CCATC	5 cut(s)	54, 527, 538, 614, 662
BciT130I	CCWGG	2 cut(s)	1032, 1223
BclI	TGATCA	1 cut(s)	931
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	1136
BfmI	CTRYAG	2 cut(s)	139, 710
BfuAI	ACCTGC	1 cut(s)	1088
BisI	GCNGC	5 cut(s)	526, 650, 926, 1084, 1129
BlsI	GCNGC	5 cut(s)	527, 651, 927, 1085, 1130
Bme1390I	CCNGG	2 cut(s)	1032, 1223
Bme18I	GGWCC	3 cut(s)	414, 797, 1034
BmgT120I	GGNCC	3 cut(s)	414, 797, 1034
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	2 cut(s)	1032, 1223
BmrI	ACTGGG	3 cut(s)	315, 907, 1002
BmsI	GCATC	2 cut(s)	541, 1115
BmtI	GCTAGC	1 cut(s)	1139
BmuI	ACTGGG	3 cut(s)	315, 907, 1002
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	1124, 1156
BpmI	CTGGAG	2 cut(s)	1014, 1205
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	3 cut(s)	524, 611, 1031
Bse1I	ACTGG	5 cut(s)	321, 433, 466, 902, 997
Bse3DI	GCAATG	1 cut(s)	385
BseBI	CCWGG	2 cut(s)	1032, 1223
BseGI	GGATG	2 cut(s)	46, 625
BseLI	CCNNNNNNNGG	3 cut(s)	524, 611, 1031
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	304, 582
BseNI	ACTGG	5 cut(s)	321, 433, 466, 902, 997
BseRI	GAGGAG	2 cut(s)	608, 1017
BseSI	GKGCMC	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	912, 1070, 1115
Bsh1285I	CGRYCG	1 cut(s)	1289
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	1289
BsiSI	CCGG	1 cut(s)	301
BslI	CCNNNNNNNGG	3 cut(s)	524, 611, 1031
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
BspACI	CCGC	6 cut(s)	326, 525, 649, 687, 957, 1016
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	303, 583
BspLI	GGNNCC	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	1088
BspOI	GCTAGC	1 cut(s)	1139
BspPI	GGATC	3 cut(s)	472, 825, 1167
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	385
BsrI	ACTGG	5 cut(s)	321, 433, 466, 902, 997
BssMI	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	1032, 1223
Bst4CI	ACNGT	3 cut(s)	81, 102, 1172
Bst6I	CTCTTC	2 cut(s)	36, 124
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	687, 751, 1133, 1137
BstDEI	CTNAG	3 cut(s)	146, 290, 591
BstENI	CCTNNNNNAGG	1 cut(s)	1029
BstF5I	GGATG	2 cut(s)	46, 625
BstKTI	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
BstMCI	CGRYCG	1 cut(s)	1289
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 431
BstNI	CCWGG	2 cut(s)	1032, 1223
BstNSI	RCATGY	3 cut(s)	656, 925, 970
BstSCI	CCNGG	2 cut(s)	1030, 1221
BstSFI	CTRYAG	2 cut(s)	139, 710
BstSLI	GKGCMC	1 cut(s)	687
BstV1I	GCAGC	3 cut(s)	912, 1070, 1115
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	46, 625
BtsI	GCAGTG	1 cut(s)	760
BtsIMutI	CAGTG	5 cut(s)	328, 459, 588, 760, 1168
BveI	ACCTGC	1 cut(s)	1088
Cac8I	GCNNGC	4 cut(s)	687, 751, 1133, 1137
CaiI	CAGNNNCTG	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	414, 797, 1034
CviAII	CATG	6 cut(s)	653, 821, 885, 922, 967, 1181
DdeI	CTNAG	3 cut(s)	146, 290, 591
DpnI	GATC	7 cut(s)	237, 390, 466, 819, 933, 1161, 1288
DpnII	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
Eam1104I	CTCTTC	2 cut(s)	36, 124
EarI	CTCTTC	2 cut(s)	36, 124
Eco147I	AGGCCT	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	1051
Eco47I	GGWCC	3 cut(s)	414, 797, 1034
Eco57I	CTGAAG	1 cut(s)	105
EcoNI	CCTNNNNNAGG	1 cut(s)	1029
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	2 cut(s)	1030, 1221
EcoRV	GATATC	1 cut(s)	1051
EcoT22I	ATGCAT	1 cut(s)	556
FaeI	CATG	6 cut(s)	656, 824, 888, 925, 970, 1184
FatI	CATG	6 cut(s)	652, 820, 884, 921, 966, 1180
FauI	CCCGC	2 cut(s)	694, 1023
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	5 cut(s)	526, 650, 926, 1084, 1129
FokI	GGATG	2 cut(s)	33, 632
Fsp4HI	GCNGC	5 cut(s)	526, 650, 926, 1084, 1129
FspBI	CTAG	1 cut(s)	1136
GluI	GCNGC	5 cut(s)	526, 650, 926, 1084, 1129
GsuI	CTGGAG	2 cut(s)	1014, 1205
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	301
Hin1II	CATG	6 cut(s)	656, 824, 888, 925, 970, 1184
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	960
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	2 cut(s)	539, 862
Hpy188I	TCNGA	7 cut(s)	76, 124, 235, 293, 310, 484, 850
Hpy188III	TCNNGA	2 cut(s)	332, 1157
Hpy8I	GTNNAC	2 cut(s)	539, 862
HpyAV	CCTTC	4 cut(s)	181, 351, 434, 1029
HpyCH4III	ACNGT	3 cut(s)	81, 102, 1172
HpyCH4IV	ACGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	96, 554, 630, 1091
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 431
HpyF3I	CTNAG	3 cut(s)	146, 290, 591
HpySE526I	ACGT	1 cut(s)	284
Hsp92II	CATG	6 cut(s)	656, 824, 888, 925, 970, 1184
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	3 cut(s)	912, 1070, 1115
LweI	GCATC	2 cut(s)	541, 1115
MaeI	CTAG	1 cut(s)	1136
MaeII	ACGT	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	457, 503, 658
MalI	GATC	7 cut(s)	237, 390, 466, 819, 933, 1161, 1288
MboI	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
MfeI	CAATTG	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	8 cut(s)	199, 223, 663, 764, 831, 880, 940, 1234
MmeI	TCCRAC	2 cut(s)	1007, 1061
Mph1103I	ATGCAT	1 cut(s)	556
MseI	TTAA	5 cut(s)	222, 255, 384, 830, 1238
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	2 cut(s)	1032, 1223
MunI	CAATTG	1 cut(s)	663
MvaI	CCWGG	2 cut(s)	1032, 1223
MwoI	GCNNNNNNNGC	2 cut(s)	142, 431
NdeII	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
NheI	GCTAGC	1 cut(s)	1135
NlaIII	CATG	6 cut(s)	656, 824, 888, 925, 970, 1184
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	3 cut(s)	457, 503, 658
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	3 cut(s)	656, 925, 970
PceI	AGGCCT	1 cut(s)	260
PciI	ACATGT	1 cut(s)	966
PfeI	GAWTC	1 cut(s)	960
PkrI	GCNGC	5 cut(s)	527, 651, 927, 1085, 1130
Ple19I	CGATCG	1 cut(s)	1289
PscI	ACATGT	1 cut(s)	966
PshBI	ATTAAT	1 cut(s)	830
Psp6I	CCWGG	2 cut(s)	1030, 1221
PspGI	CCWGG	2 cut(s)	1030, 1221
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	3 cut(s)	414, 797, 1034
PsrI	GAACNNNNNNTAC	2 cut(s)	693, 725
PstNI	CAGNNNCTG	1 cut(s)	428
PvuI	CGATCG	1 cut(s)	1289
SaqAI	TTAA	5 cut(s)	222, 255, 384, 830, 1238
SatI	GCNGC	5 cut(s)	526, 650, 926, 1084, 1129
Sau3AI	GATC	7 cut(s)	235, 388, 464, 817, 931, 1159, 1286
Sau96I	GGNCC	3 cut(s)	414, 797, 1034
ScrFI	CCNGG	2 cut(s)	1032, 1223
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	2 cut(s)	541, 1115
SfcI	CTRYAG	2 cut(s)	139, 710
SinI	GGWCC	3 cut(s)	414, 797, 1034
Sse9I	AATT	8 cut(s)	199, 223, 663, 764, 831, 880, 940, 1234
SseBI	AGGCCT	1 cut(s)	260
SsiI	CCGC	6 cut(s)	326, 525, 649, 687, 957, 1016
SspMI	CTAG	1 cut(s)	1136
StuI	AGGCCT	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	1030, 1221
TaaI	ACNGT	3 cut(s)	81, 102, 1172
TaiI	ACGT	1 cut(s)	287
TaqI	TCGA	4 cut(s)	347, 610, 1162, 1289
TasI	AATT	8 cut(s)	199, 223, 663, 764, 831, 880, 940, 1234
TauI	GCSGC	2 cut(s)	528, 652
TfiI	GAWTC	1 cut(s)	960
Tru1I	TTAA	5 cut(s)	222, 255, 384, 830, 1238
Tru9I	TTAA	5 cut(s)	222, 255, 384, 830, 1238
TscAI	CASTG	5 cut(s)	328, 466, 595, 760, 1175
TseFI	GTSAC	3 cut(s)	457, 503, 658
TseI	GCWGC	3 cut(s)	925, 1083, 1128
Tsp45I	GTSAC	3 cut(s)	457, 503, 658
TspDTI	ATGAA	8 cut(s)	17, 60, 163, 216, 873, 920, 966, 1259
TspRI	CASTG	5 cut(s)	328, 466, 595, 760, 1175
VpaK11BI	GGWCC	3 cut(s)	414, 797, 1034
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	1 cut(s)	1029
XapI	RAATTY	3 cut(s)	764, 880, 1234
XceI	RCATGY	3 cut(s)	656, 925, 970
XspI	CTAG	1 cut(s)	1136
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.