Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Forward (+)

33913327 .. 33916145

Gene Structure 2819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G372500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAACCCCTCGTCGCTTTCTGTCTTTCTTCTAACTCTTTTCCTTGTCTCCCATACTTGCCTCTCTTCGTCTTCTTCACAAACCACCTCTGAACTCTTTGAAGTTTGGTGCAAACAGTATGGCAAGTCATACTCTTCAGCACAAGAAAAGCTCTACAGACTCAGTGTGTTTGAGGACAATCTTGCCTTTGTTACCCAACACAACGATATGGGCAATTCTTCTTATACCCTTTCTCTCAATGACTTTTCTGATCTCACTCACCATGAGTTCAAGTCCTCTCGTTTAGGCTTCTCACCCTCCTTTCTCAGTCTTAAGCTTAAATCAGATAGGAAACCCAGCGTAGTTCGTGATCTTCCTTCTTCATTAGATTGGAGGAAAAAAGGGGCAGTCACCAATGTGAAAGATCAAGGGAGTTGTGGTGCTTGTTGGGCCTTCTCAACTACTGGTGCCATCGAAGGTATCAACAAGATTGTCACAGGATCGCTCATCAGCCTCTCTGAACAAGAGTTGGTTGATTGTGACAGAGTTTATCCAAACAACGGCTGCAACGGCGGACTCATGGACGATGCATTTCGATTTGTCATAGATAACAATGGGATTGACACTGAGGAAGATTACCCATATAAAGGTTGGGATGACACCTGCATTAAGAAAAAGCTAAAGAGGAATGCTGTGACCATAGATGATTATACTGATGTGCCCTCAAATGATGAGGAACAGCTACTACAAGCTGTGGCAAGTCAACCAGTGAGTGTAGGTATTTCAGGCAGTGACATGGGATTTCAGCTGTACTCAAAGGGGATTTTCAATGGCCCGTGCTCGACTTCTTTGGATCATGCTGTGTTAATCGTAGGTTATGGTTCCGAAAATGGAGTGGACTATTGGATTGTAAAGAATTCATGGGGGACACATTGGGGGATGAATGGCTACATGCACATGCTGCGTGATCATAGCAATCCCAAGGGGATCTGTGGCATCAACACGTTGGCTTCATATCCAATAAAGACAGGGGAAAACCCTCCTCTTCCCCCGCCAGGGCCGACTCGGTGCGATATCTTTACACACTGTGCAGCAGGGGAAACCTGCTGTTGTGCCAAGAGGGTTGTGGGAATATGCTTTTCTTGGAGATGCTGTGAGTTGGACTCTGCTGTTTGTTGCAAGGATCAGCGTCACTGTTGTCCCCGTGATTATCCCATCTGTGATACAGAGAGGACGCTGTGCCTCCAGAGTAATGAGCAGCTATCAACGCAGTCGCATGCTACTGGGAATTTAACATCGAAAGCGCTTGAGAGTAGAGGCAGTTTGAGGAAGTCAGGCCGCGGGTGGGGATCCATGATTCGGGATTGGATCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

452

Amino Acids

49.81

Weight (kDa)

5.9

Isoelectric Point (pI)

29.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	650
Acc36I	ACCTGC	2 cut(s)	650, 1091
AccB1I	GGYRCC	1 cut(s)	446
AccII	CGCG	1 cut(s)	1320
AciI	CCGC	4 cut(s)	552, 1031, 1318, 1320
AclWI	GGATC	8 cut(s)	487, 840, 974, 1170, 1323, 1336, 1342, 1355
AcsI	RAATTY	2 cut(s)	895, 1267
AcuI	CTGAAG	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	1067
AfaI	GTAC	1 cut(s)	791
AfeI	AGCGCT	1 cut(s)	1284
AfiI	CCNNNNNNNGG	6 cut(s)	539, 626, 1034, 1035, 1324, 1338
AflII	CTTAAG	1 cut(s)	311
AflIII	ACRYGT	1 cut(s)	981
AgsI	TTSAA	3 cut(s)	101, 271, 808
AjnI	CCWGG	1 cut(s)	1033
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	7 cut(s)	151, 316, 658, 721, 731, 787, 1240
AluI	AGCT	7 cut(s)	151, 316, 658, 721, 731, 787, 1240
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	8 cut(s)	487, 840, 974, 1170, 1323, 1336, 1342, 1355
Aor51HI	AGCGCT	1 cut(s)	1284
AoxI	GGCC	4 cut(s)	429, 811, 1037, 1315
ApeKI	GCWGC	4 cut(s)	543, 940, 1070, 1237
ApoI	RAATTY	2 cut(s)	895, 1267
AspLEI	GCGC	1 cut(s)	1285
AspS9I	GGNCC	3 cut(s)	429, 812, 1037
AsuHPI	GGTGA	3 cut(s)	251, 285, 382
BaeGI	GKGCMC	1 cut(s)	702
BamHI	GGATCC	2 cut(s)	1328, 1347
BanI	GGYRCC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	4 cut(s)	530, 927, 1082, 1249
BccI	CCATC	2 cut(s)	458, 1202
BceAI	ACGGC	2 cut(s)	556, 565
BciT130I	CCWGG	1 cut(s)	1035
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	1286
BfrI	CTTAAG	1 cut(s)	311
BfuAI	ACCTGC	2 cut(s)	650, 1091
BisI	GCNGC	5 cut(s)	544, 941, 1071, 1238, 1318
BlsI	GCNGC	5 cut(s)	545, 942, 1072, 1239, 1319
Bme1390I	CCNGG	1 cut(s)	1035
BmgT120I	GGNCC	3 cut(s)	429, 812, 1037
BmiI	GGNNCC	4 cut(s)	448, 862, 1330, 1349
BmrFI	CCNGG	1 cut(s)	1035
BmrI	ACTGGG	1 cut(s)	1272
BmsI	GCATC	3 cut(s)	556, 984, 1118
BmuI	ACTGGG	1 cut(s)	1272
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	1127, 1159
BpmI	CTGGAG	1 cut(s)	1208
BpuEI	CTTGAG	1 cut(s)	1307
BsaJI	CCNNGG	3 cut(s)	960, 1034, 1318
BsaXI	ACNNNNNCTCC	4 cut(s)	403, 433, 1117, 1147
Bsc4I	CCNNNNNNNGG	6 cut(s)	539, 626, 1034, 1035, 1324, 1338
Bse1I	ACTGG	3 cut(s)	448, 746, 1267
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	3 cut(s)	960, 1034, 1318
BseGI	GGATG	2 cut(s)	640, 924
BseLI	CCNNNNNNNGG	6 cut(s)	539, 626, 1034, 1035, 1324, 1338
BseMII	CTCAG	3 cut(s)	175, 319, 597
BseNI	ACTGG	3 cut(s)	448, 746, 1267
BseRI	GAGGAG	1 cut(s)	1011
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	4 cut(s)	530, 927, 1082, 1249
BseYI	CCCAGC	1 cut(s)	335
BsgI	GTGCAG	1 cut(s)	1089
Bsh1236I	CGCG	1 cut(s)	1320
BshFI	GGCC	4 cut(s)	431, 813, 1039, 1317
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	821
BslFI	GGGAC	2 cut(s)	919, 1164
BslI	CCNNNNNNNGG	6 cut(s)	539, 626, 1034, 1035, 1324, 1338
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	2 cut(s)	919, 1164
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	4 cut(s)	431, 813, 1039, 1317
Bsp1286I	GDGCHC	2 cut(s)	702, 821
BspACI	CCGC	4 cut(s)	552, 1031, 1318, 1320
BspANI	GGCC	4 cut(s)	431, 813, 1039, 1317
BspCNI	CTCAG	3 cut(s)	174, 318, 598
BspFNI	CGCG	1 cut(s)	1320
BspLI	GGNNCC	4 cut(s)	448, 862, 1330, 1349
BspMI	ACCTGC	2 cut(s)	650, 1091
BspPI	GGATC	8 cut(s)	487, 840, 974, 1170, 1323, 1336, 1342, 1355
BspT107I	GGYRCC	1 cut(s)	446
BspTI	CTTAAG	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	448, 746, 1267
BssECI	CCNNGG	3 cut(s)	960, 1034, 1318
BssT1I	CCWWGG	1 cut(s)	960
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	3 cut(s)	117, 1067, 1175
Bst6I	CTCTTC	3 cut(s)	70, 139, 1029
BstAFI	CTTAAG	1 cut(s)	311
BstAPI	GCANNNNNTGC	1 cut(s)	940
BstC8I	GCNNGC	1 cut(s)	1257
BstDEI	CTNAG	3 cut(s)	161, 305, 606
BstDSI	CCRYGG	1 cut(s)	1318
BstF5I	GGATG	2 cut(s)	640, 924
BstFNI	CGCG	1 cut(s)	1320
BstH2I	RGCGCY	1 cut(s)	1286
BstHHI	GCGC	1 cut(s)	1285
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 549, 940, 1246
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	3 cut(s)	934, 940, 1259
BstSCI	CCNGG	1 cut(s)	1033
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	702
BstUI	CGCG	1 cut(s)	1320
BstV1I	GCAGC	4 cut(s)	530, 927, 1082, 1249
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	3 cut(s)	966, 1328, 1347
BstYI	RGATCY	3 cut(s)	966, 1328, 1347
BsuRI	GGCC	4 cut(s)	431, 813, 1039, 1317
BtgI	CCRYGG	1 cut(s)	1318
BtsCI	GGATG	2 cut(s)	640, 924
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	6 cut(s)	169, 603, 753, 775, 1063, 1171
BveI	ACCTGC	2 cut(s)	650, 1091
Cac8I	GCNNGC	1 cut(s)	1257
CfoI	GCGC	1 cut(s)	1285
Cfr13I	GGNCC	3 cut(s)	429, 812, 1037
Cfr42I	CCGCGG	1 cut(s)	1321
CseI	GACGC	2 cut(s)	1157, 1222
Csp6I	GTAC	1 cut(s)	790
CviAII	CATG	9 cut(s)	263, 559, 775, 836, 900, 931, 937, 1256, 1333
CviQI	GTAC	1 cut(s)	790
DdeI	CTNAG	3 cut(s)	161, 305, 606
DraIII	CACNNNGTG	1 cut(s)	1067
Eam1104I	CTCTTC	3 cut(s)	70, 139, 1029
EarI	CTCTTC	3 cut(s)	70, 139, 1029
EciI	GGCGGA	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	960
Eco32I	GATATC	1 cut(s)	1054
Eco47III	AGCGCT	1 cut(s)	1284
Eco57I	CTGAAG	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	1 cut(s)	1033
EcoRV	GATATC	1 cut(s)	1054
EcoT14I	CCWWGG	1 cut(s)	960
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	960
FaeI	CATG	9 cut(s)	266, 562, 778, 839, 903, 934, 940, 1259, 1336
FaqI	GGGAC	2 cut(s)	919, 1164
FatI	CATG	9 cut(s)	262, 558, 774, 835, 899, 930, 936, 1255, 1332
FauI	CCCGC	2 cut(s)	1038, 1313
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	5 cut(s)	544, 941, 1071, 1238, 1318
FokI	GGATG	2 cut(s)	647, 931
Fsp4HI	GCNGC	5 cut(s)	544, 941, 1071, 1238, 1318
GlaI	GCGC	1 cut(s)	1284
GluI	GCNGC	5 cut(s)	544, 941, 1071, 1238, 1318
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	1208
HaeII	RGCGCY	1 cut(s)	1286
HaeIII	GGCC	4 cut(s)	431, 813, 1039, 1317
HgaI	GACGC	2 cut(s)	1157, 1222
HhaI	GCGC	1 cut(s)	1285
Hin1II	CATG	9 cut(s)	266, 562, 778, 839, 903, 934, 940, 1259, 1336
Hin6I	GCGC	1 cut(s)	1283
HinP1I	GCGC	1 cut(s)	1283
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	5 cut(s)	159, 555, 1042, 1142, 1336
HphI	GGTGA	3 cut(s)	251, 285, 382
Hpy166II	GTNNAC	2 cut(s)	743, 877
Hpy188I	TCNGA	5 cut(s)	91, 250, 325, 499, 865
Hpy188III	TCNNGA	3 cut(s)	347, 1225, 1340
Hpy8I	GTNNAC	2 cut(s)	743, 877
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	366, 442, 449
HpyCH4III	ACNGT	3 cut(s)	117, 1067, 1175
HpyCH4IV	ACGT	1 cut(s)	983
HpyCH4V	TGCA	7 cut(s)	111, 546, 569, 645, 934, 1070, 1158
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 549, 940, 1246
HpyF3I	CTNAG	3 cut(s)	161, 305, 606
HpySE526I	ACGT	1 cut(s)	983
Hsp92II	CATG	9 cut(s)	266, 562, 778, 839, 903, 934, 940, 1259, 1336
HspAI	GCGC	1 cut(s)	1283
Ksp22I	TGATCA	1 cut(s)	946
KspI	CCGCGG	1 cut(s)	1321
Lsp1109I	GCAGC	4 cut(s)	530, 927, 1082, 1249
LweI	GCATC	3 cut(s)	556, 984, 1118
MaeII	ACGT	1 cut(s)	983
MaeIII	GTNAC	7 cut(s)	190, 388, 472, 518, 673, 770, 1169
MflI	RGATCY	3 cut(s)	966, 1328, 1347
MhlI	GDGCHC	2 cut(s)	702, 821
MluCI	AATT	3 cut(s)	214, 895, 1267
MlyI	GAGTC	4 cut(s)	153, 549, 1036, 1136
MmeI	TCCRAC	1 cut(s)	1119
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	5 cut(s)	312, 318, 648, 845, 1271
MslI	CAYNNNNRTG	2 cut(s)	395, 935
MspA1I	CMGCKG	2 cut(s)	787, 1320
MspCI	CTTAAG	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	1035
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	1035
MvnI	CGCG	1 cut(s)	1320
MwoI	GCNNNNNNNGC	4 cut(s)	428, 549, 940, 1246
NlaIII	CATG	9 cut(s)	266, 562, 778, 839, 903, 934, 940, 1259, 1336
NlaIV	GGNNCC	4 cut(s)	448, 862, 1330, 1349
NmuCI	GTSAC	6 cut(s)	388, 472, 518, 673, 770, 1169
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	3 cut(s)	934, 940, 1259
OliI	CACNNNNGTG	1 cut(s)	395
PaeI	GCATGC	1 cut(s)	1259
PaqCI	CACCTGC	1 cut(s)	650
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	1336
PkrI	GCNGC	5 cut(s)	545, 942, 1072, 1239, 1319
PleI	GAGTC	4 cut(s)	153, 549, 1036, 1136
PpsI	GAGTC	4 cut(s)	153, 549, 1036, 1136
Psp6I	CCWGG	1 cut(s)	1033
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	4 cut(s)	448, 862, 1330, 1349
PspPI	GGNCC	3 cut(s)	429, 812, 1037
PsrI	GAACNNNNNNTAC	2 cut(s)	708, 740
PsuI	RGATCY	3 cut(s)	966, 1328, 1347
PvuII	CAGCTG	1 cut(s)	787
RsaI	GTAC	1 cut(s)	791
RsaNI	GTAC	1 cut(s)	790
RseI	CAYNNNNRTG	2 cut(s)	395, 935
SacII	CCGCGG	1 cut(s)	1321
SaqAI	TTAA	5 cut(s)	312, 318, 648, 845, 1271
SatI	GCNGC	5 cut(s)	544, 941, 1071, 1238, 1318
Sau96I	GGNCC	3 cut(s)	429, 812, 1037
SchI	GAGTC	4 cut(s)	153, 549, 1036, 1136
ScrFI	CCNGG	1 cut(s)	1035
SduI	GDGCHC	2 cut(s)	702, 821
SfaNI	GCATC	3 cut(s)	556, 984, 1118
SfcI	CTRYAG	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	1321
SgrBI	CCGCGG	1 cut(s)	1321
SmiMI	CAYNNNNRTG	2 cut(s)	395, 935
SmlI	CTYRAG	2 cut(s)	311, 1286
SmoI	CTYRAG	2 cut(s)	311, 1286
SphI	GCATGC	1 cut(s)	1259
Sse9I	AATT	3 cut(s)	214, 895, 1267
SsiI	CCGC	4 cut(s)	552, 1031, 1318, 1320
StyD4I	CCNGG	1 cut(s)	1033
StyI	CCWWGG	1 cut(s)	960
TaaI	ACNGT	3 cut(s)	117, 1067, 1175
TaiI	ACGT	1 cut(s)	986
TaqI	TCGA	4 cut(s)	453, 574, 821, 1277
TasI	AATT	3 cut(s)	214, 895, 1267
TatI	WGTACW	1 cut(s)	789
TauI	GCSGC	1 cut(s)	1320
TfiI	GAWTC	1 cut(s)	1336
Tru1I	TTAA	5 cut(s)	312, 318, 648, 845, 1271
Tru9I	TTAA	5 cut(s)	312, 318, 648, 845, 1271
TscAI	CASTG	6 cut(s)	169, 610, 753, 775, 1070, 1178
TseFI	GTSAC	6 cut(s)	388, 472, 518, 673, 770, 1169
TseI	GCWGC	4 cut(s)	543, 940, 1070, 1237
Tsp45I	GTSAC	6 cut(s)	388, 472, 518, 673, 770, 1169
TspDTI	ATGAA	5 cut(s)	17, 351, 888, 935, 981
TspRI	CASTG	6 cut(s)	169, 610, 753, 775, 1070, 1178
Vha464I	CTTAAG	1 cut(s)	311
XapI	RAATTY	2 cut(s)	895, 1267
XceI	RCATGY	3 cut(s)	934, 940, 1259
XcmI	CCANNNNNNNNNTGG	2 cut(s)	627, 1102
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.