Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Reverse (-)

64972137 .. 64975057

Gene Structure 2921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAACCCTTTGTTGCTCTCTCTTCTAACTCTTCTTCTTGTCTCCCATCCTTGCCTTTCTTCTTCTTCTTCTTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCATCTGAACTGTTTGAAGCTTGGTGCAAACAGTATGGCAAGTCATACTCTTCAGAACAAGAAAAGCTCTACAGGCTTAGTGTGTTTGAGCAAAATCTTGCCTTCATTACTCAACACAATGATTTGGGCAATTCTTCTTACACCCTTTCTCTCAATTCATTTTCTGATCTTGCCCACCACGAGTTTAAGGCCTCTCGGTTAGGATTTTCGCCTACGTTTCTCAGACTTAACCGGAAATCAGACCCAACACCCAGTGCGGTTCGTGATGTTCCTTCTTCGATTGATTGGAGGAAGAATGGAGCTGTGACCAATGTTAAAGATCAAGGCAGTTGTGGTGCTTGTTGGTCCTTTTCAGCAACTGGTGCCATTGAAGGTATCAACAAGATTGTCACTGGATCACTTGTCAGCCTCTCCGAACAAGAGTTGATTGATTGTGACAGAGTTTATCCAAATAGCGGCTGTGATGGTGGACTGATGGACGATGCATTTCAGTTTATCATAGATAACAATGGGATTGACACTGAGGAGGATTACCCGTATCGAGGTGTGGATGGCACTTGCAATAAGCAAAGGTTGAAGCGGCATGTTGTGACAATTGATGGCTATACTGATGTGCCCGCAAATGATGTGGAACAACTCCTACAGGCTGTGGCAAGGCAACCTGTGAGTGTAGGTATAGCTGGCAGTGGCAGGGAATTTCAGTTCTACTCAAAGGGGATTTTTGCTGGCCCTTGTTCAACTTCTTTGGATCATGCTGTATTAATTGTAGGTTATGGTTCAGAAAATGGGGTGAACTATTGGATTGTAAAGAATTCATGGGGTAAGAACTGGGGAATGAATGGCTATATTCACATGCTGCGTGATCATAGCAATTCCAAAGGGGTCTGCGGAATCAACATGTTGGCTTCATATCCAACAAAGACTGGGGAAAACCCTCCTTTTCCCCCGCCTTCCCCTCCTCCAGGTCCAACTAAATGTGATATCTTTTCCAAGTGTGGAGTTGGGGAAACCTGCTGCTGTGCTAAGAAGTTTTTTGGAATATGCCTTTCTTGGAGATGCTGCGAGCTAGCCTCTGCTGTTTGTTGTAAGGATCAACTTCACTGTTGCCCCCATGATTATCCTATTTGTGATACAGAGAGGAACTTCTGCCTCCAGGCTAACGGGAATTTAACAATGAAAGCAAATGAGAGTAGAGGCAGTTTGGGAAAGTCAAGCCGATCGAAAGCAAAGTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

446

Amino Acids

48.67

Weight (kDa)

6.55

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	1.1e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	124 - 340	3.5e-83	Papain family cysteine protease
Granulin	PF00396	371 - 418	1.7e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1121
AccB1I	GGYRCC	1 cut(s)	464
AciI	CCGC	6 cut(s)	359, 558, 682, 720, 990, 1049
AclWI	GGATC	3 cut(s)	505, 858, 1200
AcsI	RAATTY	3 cut(s)	797, 913, 1267
AcuI	CTGAAG	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	356
AfiI	CCNNNNNNNGG	3 cut(s)	557, 644, 1064
AflIII	ACRYGT	1 cut(s)	999
AgsI	TTSAA	4 cut(s)	119, 473, 679, 840
AjnI	CCWGG	2 cut(s)	1063, 1254
AloI	GAACNNNNNNTCC	2 cut(s)	788, 820
AluBI	AGCT	5 cut(s)	122, 169, 404, 782, 1168
AluI	AGCT	5 cut(s)	122, 169, 404, 782, 1168
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	3 cut(s)	505, 858, 1200
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	291, 829
ApeKI	GCWGC	3 cut(s)	958, 1116, 1161
ApoI	RAATTY	3 cut(s)	797, 913, 1267
AseI	ATTAAT	1 cut(s)	863
AspS9I	GGNCC	3 cut(s)	447, 830, 1067
AsuHPI	GGTGA	1 cut(s)	904
AsuNHI	GCTAGC	1 cut(s)	1168
AvaII	GGWCC	2 cut(s)	447, 1067
BaeGI	GKGCMC	1 cut(s)	720
BanI	GGYRCC	1 cut(s)	464
BauI	CACGAG	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	945, 1103, 1148
BccI	CCATC	5 cut(s)	54, 560, 571, 647, 695
BciT130I	CCWGG	2 cut(s)	1065, 1256
BclI	TGATCA	1 cut(s)	964
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	1169, 1339
BfmI	CTRYAG	2 cut(s)	172, 743
BfuAI	ACCTGC	1 cut(s)	1121
BisI	GCNGC	5 cut(s)	559, 683, 959, 1117, 1162
BlsI	GCNGC	5 cut(s)	560, 684, 960, 1118, 1163
Bme1390I	CCNGG	2 cut(s)	1065, 1256
Bme18I	GGWCC	2 cut(s)	447, 1067
BmgT120I	GGNCC	3 cut(s)	447, 830, 1067
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	1065, 1256
BmrI	ACTGGG	3 cut(s)	348, 940, 1035
BmsI	GCATC	2 cut(s)	574, 1148
BmtI	GCTAGC	1 cut(s)	1172
BmuI	ACTGGG	3 cut(s)	348, 940, 1035
BplI	GAGNNNNNCTC	2 cut(s)	1157, 1189
BpmI	CTGGAG	2 cut(s)	1047, 1238
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 644, 1064
Bse1I	ACTGG	5 cut(s)	354, 466, 499, 935, 1030
BseBI	CCWGG	2 cut(s)	1065, 1256
BseGI	GGATG	2 cut(s)	46, 658
BseLI	CCNNNNNNNGG	3 cut(s)	557, 644, 1064
BseMII	CTCAG	2 cut(s)	337, 615
BseNI	ACTGG	5 cut(s)	354, 466, 499, 935, 1030
BseRI	GAGGAG	2 cut(s)	641, 1050
BseSI	GKGCMC	1 cut(s)	720
BseXI	GCAGC	3 cut(s)	945, 1103, 1148
Bsh1285I	CGRYCG	1 cut(s)	1322
BshFI	GGCC	2 cut(s)	293, 831
BshNI	GGYRCC	1 cut(s)	464
BsiEI	CGRYCG	1 cut(s)	1322
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	557, 644, 1064
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	293, 831
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
BspACI	CCGC	6 cut(s)	359, 558, 682, 720, 990, 1049
BspANI	GGCC	2 cut(s)	293, 831
BspCNI	CTCAG	2 cut(s)	336, 616
BspLI	GGNNCC	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	1121
BspOI	GCTAGC	1 cut(s)	1172
BspPI	GGATC	3 cut(s)	505, 858, 1200
BspT107I	GGYRCC	1 cut(s)	464
BsrI	ACTGG	5 cut(s)	354, 466, 499, 935, 1030
BssMI	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	1065, 1256
Bst4CI	ACNGT	3 cut(s)	114, 135, 1205
Bst6I	CTCTTC	3 cut(s)	27, 36, 157
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	5 cut(s)	720, 784, 829, 1166, 1170
BstDEI	CTNAG	4 cut(s)	179, 323, 624, 1125
BstENI	CCTNNNNNAGG	1 cut(s)	1062
BstF5I	GGATG	2 cut(s)	46, 658
BstKTI	GATC	7 cut(s)	271, 424, 500, 853, 967, 1195, 1322
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
BstMCI	CGRYCG	1 cut(s)	1322
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 464
BstNI	CCWGG	2 cut(s)	1065, 1256
BstNSI	RCATGY	3 cut(s)	689, 958, 1003
BstSCI	CCNGG	2 cut(s)	1063, 1254
BstSFI	CTRYAG	2 cut(s)	172, 743
BstSLI	GKGCMC	1 cut(s)	720
BstV1I	GCAGC	3 cut(s)	945, 1103, 1148
BsuRI	GGCC	2 cut(s)	293, 831
BtsCI	GGATG	2 cut(s)	46, 658
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	5 cut(s)	361, 492, 621, 793, 1201
BveI	ACCTGC	1 cut(s)	1121
Cac8I	GCNNGC	5 cut(s)	720, 784, 829, 1166, 1170
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	3 cut(s)	447, 830, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	6 cut(s)	686, 854, 918, 955, 1000, 1214
DdeI	CTNAG	4 cut(s)	179, 323, 624, 1125
DpnI	GATC	7 cut(s)	270, 423, 499, 852, 966, 1194, 1321
DpnII	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
DraIII	CACNNNGTG	1 cut(s)	356
Eam1104I	CTCTTC	3 cut(s)	27, 36, 157
EarI	CTCTTC	3 cut(s)	27, 36, 157
Eco147I	AGGCCT	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	1084
Eco47I	GGWCC	2 cut(s)	447, 1067
Eco57I	CTGAAG	1 cut(s)	138
EcoNI	CCTNNNNNAGG	1 cut(s)	1062
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	2 cut(s)	1063, 1254
EcoRV	GATATC	1 cut(s)	1084
EcoT22I	ATGCAT	1 cut(s)	589
FaeI	CATG	6 cut(s)	689, 857, 921, 958, 1003, 1217
FatI	CATG	6 cut(s)	685, 853, 917, 954, 999, 1213
FauI	CCCGC	2 cut(s)	727, 1056
FbaI	TGATCA	1 cut(s)	964
Fnu4HI	GCNGC	5 cut(s)	559, 683, 959, 1117, 1162
FokI	GGATG	2 cut(s)	33, 665
Fsp4HI	GCNGC	5 cut(s)	559, 683, 959, 1117, 1162
FspBI	CTAG	2 cut(s)	1169, 1339
GluI	GCNGC	5 cut(s)	559, 683, 959, 1117, 1162
GsuI	CTGGAG	2 cut(s)	1047, 1238
HaeIII	GGCC	2 cut(s)	293, 831
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	6 cut(s)	689, 857, 921, 958, 1003, 1217
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	993
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	2 cut(s)	572, 895
Hpy188I	TCNGA	7 cut(s)	109, 157, 268, 326, 343, 517, 883
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	572, 895
HpyAV	CCTTC	4 cut(s)	214, 384, 467, 1062
HpyCH4III	ACNGT	3 cut(s)	114, 135, 1205
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	3 cut(s)	129, 587, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 464
HpyF3I	CTNAG	4 cut(s)	179, 323, 624, 1125
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	6 cut(s)	689, 857, 921, 958, 1003, 1217
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
LmnI	GCTCC	1 cut(s)	401
Lsp1109I	GCAGC	3 cut(s)	945, 1103, 1148
LweI	GCATC	2 cut(s)	574, 1148
MaeI	CTAG	2 cut(s)	1169, 1339
MaeII	ACGT	1 cut(s)	317
MaeIII	GTNAC	4 cut(s)	406, 490, 536, 691
MalI	GATC	7 cut(s)	270, 423, 499, 852, 966, 1194, 1321
MboI	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
MfeI	CAATTG	1 cut(s)	696
MhlI	GDGCHC	1 cut(s)	720
MluCI	AATT	8 cut(s)	232, 256, 696, 797, 864, 913, 973, 1267
MmeI	TCCRAC	2 cut(s)	1040, 1094
Mph1103I	ATGCAT	1 cut(s)	589
MseI	TTAA	5 cut(s)	288, 330, 417, 863, 1271
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	1065, 1256
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	2 cut(s)	1065, 1256
MwoI	GCNNNNNNNGC	2 cut(s)	175, 464
NdeII	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
NheI	GCTAGC	1 cut(s)	1168
NlaIII	CATG	6 cut(s)	689, 857, 921, 958, 1003, 1217
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	4 cut(s)	406, 490, 536, 691
NsiI	ATGCAT	1 cut(s)	589
NspI	RCATGY	3 cut(s)	689, 958, 1003
PceI	AGGCCT	1 cut(s)	293
PciI	ACATGT	1 cut(s)	999
PfeI	GAWTC	1 cut(s)	993
PkrI	GCNGC	5 cut(s)	560, 684, 960, 1118, 1163
Ple19I	CGATCG	1 cut(s)	1322
PscI	ACATGT	1 cut(s)	999
PshBI	ATTAAT	1 cut(s)	863
Psp6I	CCWGG	2 cut(s)	1063, 1254
PspGI	CCWGG	2 cut(s)	1063, 1254
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	3 cut(s)	447, 830, 1067
PsrI	GAACNNNNNNTAC	2 cut(s)	726, 758
PstNI	CAGNNNCTG	1 cut(s)	461
PvuI	CGATCG	1 cut(s)	1322
SaqAI	TTAA	5 cut(s)	288, 330, 417, 863, 1271
SatI	GCNGC	5 cut(s)	559, 683, 959, 1117, 1162
Sau3AI	GATC	7 cut(s)	268, 421, 497, 850, 964, 1192, 1319
Sau96I	GGNCC	3 cut(s)	447, 830, 1067
ScrFI	CCNGG	2 cut(s)	1065, 1256
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	2 cut(s)	574, 1148
SfcI	CTRYAG	2 cut(s)	172, 743
SinI	GGWCC	2 cut(s)	447, 1067
Sse9I	AATT	8 cut(s)	232, 256, 696, 797, 864, 913, 973, 1267
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	6 cut(s)	359, 558, 682, 720, 990, 1049
SspMI	CTAG	2 cut(s)	1169, 1339
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	1063, 1254
TaaI	ACNGT	3 cut(s)	114, 135, 1205
TaiI	ACGT	1 cut(s)	320
TaqI	TCGA	3 cut(s)	380, 643, 1322
TasI	AATT	8 cut(s)	232, 256, 696, 797, 864, 913, 973, 1267
TauI	GCSGC	2 cut(s)	561, 685
TfiI	GAWTC	1 cut(s)	993
Tru1I	TTAA	5 cut(s)	288, 330, 417, 863, 1271
Tru9I	TTAA	5 cut(s)	288, 330, 417, 863, 1271
TscAI	CASTG	5 cut(s)	361, 499, 628, 793, 1208
TseFI	GTSAC	4 cut(s)	406, 490, 536, 691
TseI	GCWGC	3 cut(s)	958, 1116, 1161
Tsp45I	GTSAC	4 cut(s)	406, 490, 536, 691
TspDTI	ATGAA	8 cut(s)	17, 93, 196, 249, 906, 953, 999, 1292
TspRI	CASTG	5 cut(s)	361, 499, 628, 793, 1208
VpaK11BI	GGWCC	2 cut(s)	447, 1067
VspI	ATTAAT	1 cut(s)	863
XagI	CCTNNNNNAGG	1 cut(s)	1062
XapI	RAATTY	3 cut(s)	797, 913, 1267
XceI	RCATGY	3 cut(s)	689, 958, 1003
XspI	CTAG	2 cut(s)	1169, 1339
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.