Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Reverse (-)

61574000 .. 61577365

Gene Structure 3366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG436100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGAACCCTTTGTTGCTTTGTCTTCTAACTCTTCTTCTTGTCTCCCATCCTTGCCTTTCTTCTTCTGCTTATTCTTCTTCTTCTTCATCTGAACTGTTTGAAGCTTGGTGCAAACAGTATGGCAAGTCATACTCTTCAGAACAAGAAAAGCTCTACAGGCTTAGTGTGTTTGAGCAAAATCTTGCCTTCATTACTCAACACAATGATTTGGGCAATTCCTCTTACACCCTTTCTCTCAATTCATTTTCTGATCTTGCCCACCACGAGTTTAAGGCCTCTCTGTTAGGATTTTCGCCTACGTTTCTCAGACTTAACCGGAAATCAGACCCAAAACCCAGTGCGGTTCGTGATGTTCCTTCTTCGATTGATTGGAGGAAGAATGGAGCTGTGAGCAATGTTAAAGATCAAGGCAGTTGTGGTGCTTGTTGGTCCTTTTCAGCAACTGGTGCCATTGAAGGTATCAACAAGATTGTCACTGGATCACTTGTCAGCCTCTCCGAACAAGAGTTGATTGATTGTGACAGAGTTTATCCAAATAGCGGCTGTGATGGTGGACTGATGGACGATGCATTTCAGTTTATCATAGATAACAATGGGATTGACACTGAGGAGGATTACCCGTATCGAGGTGTGGATGGCACTTGCAATAAGCAAAAGTTGAAGCGGCATGTTGTGACAATTGATGGCTATACTGATGTGCCCGCAAATGATGAGGAACAACTCCTACAGGCTGTGGCAAGGCAACCTGTGAGTGTAGGTATAGCTGGCAGTGGCAGGGAATTTCAGTTCTACTCAAAGGGGATTTTTGCTGGTCCTTGTTCAACTTCTTTGGATCATGCTGTATTAATTGTAGGTTATGGTTCAGAAAATGGGGTGAACTATTGGATTGTAAAGAATTCATGGGGTAAGAACTGGGGAATGAATGGCTATATTCACATGCTGCGTGATCATAGCAATTCCAAAGGGGTCTGCGGAATCAACATGTTGGCTTCATATCCAACAAAGACTGGGGAAAACCCTCCTTTTCCCCCGCCTTCCCCTCCTCCAGGTCCAACTAAATGTGATATTTTTTCCAAGTGTGGAGTTGGGGAAACCTGCTGCTGTGCAAAGAAGTTTTTTGGAATATGCATTTCTTGGAGATGCTGCGAGCTAGCCTCTGCTGTTTGTTGTCAGGATCGACTTCACTGTTGCCCCCATGATTATCCTATTTGTGATACAGAGAGGAACTTCTGCCTCCAGGCTAACGGGAATTTAACAATGAAAGCAAATGAGAGTAGAGGCAGTTTGGGAAAGTCAAGCCGATCGAAAGCAAAGTTGTTCTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

442

Amino Acids

48.5

Weight (kDa)

6.37

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	33 - 90	1.1e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	118 - 334	1.4e-83	Papain family cysteine protease
Granulin	PF00396	365 - 412	1.7e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1103
AccB1I	GGYRCC	1 cut(s)	446
AciI	CCGC	6 cut(s)	341, 540, 664, 702, 972, 1031
AclWI	GGATC	3 cut(s)	487, 840, 1182
AcsI	RAATTY	3 cut(s)	779, 895, 1249
AcuI	CTGAAG	1 cut(s)	120
AfiI	CCNNNNNNNGG	3 cut(s)	539, 626, 1046
AflIII	ACRYGT	1 cut(s)	981
AgsI	TTSAA	4 cut(s)	101, 455, 661, 822
AjnI	CCWGG	2 cut(s)	1045, 1236
AloI	GAACNNNNNNTCC	2 cut(s)	770, 802
AluBI	AGCT	5 cut(s)	104, 151, 386, 764, 1150
AluI	AGCT	5 cut(s)	104, 151, 386, 764, 1150
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	3 cut(s)	487, 840, 1182
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	3 cut(s)	940, 1098, 1143
ApoI	RAATTY	3 cut(s)	779, 895, 1249
AseI	ATTAAT	1 cut(s)	845
AspS9I	GGNCC	3 cut(s)	429, 812, 1049
AsuHPI	GGTGA	1 cut(s)	886
AsuNHI	GCTAGC	1 cut(s)	1150
AvaII	GGWCC	3 cut(s)	429, 812, 1049
BaeGI	GKGCMC	1 cut(s)	702
BanI	GGYRCC	1 cut(s)	446
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	927, 1085, 1130
BccI	CCATC	5 cut(s)	54, 542, 553, 629, 677
BciT130I	CCWGG	2 cut(s)	1047, 1238
BclI	TGATCA	1 cut(s)	946
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	1151
BfmI	CTRYAG	2 cut(s)	154, 725
BfuAI	ACCTGC	1 cut(s)	1103
BisI	GCNGC	5 cut(s)	541, 665, 941, 1099, 1144
BlsI	GCNGC	5 cut(s)	542, 666, 942, 1100, 1145
Bme1390I	CCNGG	2 cut(s)	1047, 1238
Bme18I	GGWCC	3 cut(s)	429, 812, 1049
BmgT120I	GGNCC	3 cut(s)	429, 812, 1049
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	2 cut(s)	1047, 1238
BmrI	ACTGGG	3 cut(s)	330, 922, 1017
BmsI	GCATC	2 cut(s)	556, 1130
BmtI	GCTAGC	1 cut(s)	1154
BmuI	ACTGGG	3 cut(s)	330, 922, 1017
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	1139, 1171
BpmI	CTGGAG	2 cut(s)	1029, 1220
BsaWI	WCCGGW	1 cut(s)	315
Bsc4I	CCNNNNNNNGG	3 cut(s)	539, 626, 1046
Bse1I	ACTGG	5 cut(s)	336, 448, 481, 917, 1012
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	1047, 1238
BseGI	GGATG	2 cut(s)	46, 640
BseLI	CCNNNNNNNGG	3 cut(s)	539, 626, 1046
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	319, 597
BseNI	ACTGG	5 cut(s)	336, 448, 481, 917, 1012
BseRI	GAGGAG	2 cut(s)	623, 1032
BseSI	GKGCMC	1 cut(s)	702
BseXI	GCAGC	3 cut(s)	927, 1085, 1130
Bsh1285I	CGRYCG	1 cut(s)	1304
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	1304
BsiSI	CCGG	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	539, 626, 1046
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
BspACI	CCGC	6 cut(s)	341, 540, 664, 702, 972, 1031
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	318, 598
BspLI	GGNNCC	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	1103
BspOI	GCTAGC	1 cut(s)	1154
BspPI	GGATC	3 cut(s)	487, 840, 1182
BspT107I	GGYRCC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	5 cut(s)	336, 448, 481, 917, 1012
BssMI	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	1047, 1238
Bst4CI	ACNGT	3 cut(s)	96, 117, 1187
Bst6I	CTCTTC	2 cut(s)	36, 139
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	4 cut(s)	702, 766, 1148, 1152
BstDEI	CTNAG	3 cut(s)	161, 305, 606
BstENI	CCTNNNNNAGG	1 cut(s)	1044
BstF5I	GGATG	2 cut(s)	46, 640
BstKTI	GATC	7 cut(s)	253, 406, 482, 835, 949, 1177, 1304
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
BstMCI	CGRYCG	1 cut(s)	1304
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 446
BstNI	CCWGG	2 cut(s)	1047, 1238
BstNSI	RCATGY	3 cut(s)	671, 940, 985
BstSCI	CCNGG	2 cut(s)	1045, 1236
BstSFI	CTRYAG	2 cut(s)	154, 725
BstSLI	GKGCMC	1 cut(s)	702
BstV1I	GCAGC	3 cut(s)	927, 1085, 1130
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	46, 640
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	5 cut(s)	343, 474, 603, 775, 1183
BveI	ACCTGC	1 cut(s)	1103
Cac8I	GCNNGC	4 cut(s)	702, 766, 1148, 1152
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr13I	GGNCC	3 cut(s)	429, 812, 1049
CviAII	CATG	6 cut(s)	668, 836, 900, 937, 982, 1196
DdeI	CTNAG	3 cut(s)	161, 305, 606
DpnI	GATC	7 cut(s)	252, 405, 481, 834, 948, 1176, 1303
DpnII	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
Eam1104I	CTCTTC	2 cut(s)	36, 139
EarI	CTCTTC	2 cut(s)	36, 139
Eco147I	AGGCCT	1 cut(s)	275
Eco47I	GGWCC	3 cut(s)	429, 812, 1049
Eco57I	CTGAAG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	1044
EcoRI	GAATTC	1 cut(s)	895
EcoRII	CCWGG	2 cut(s)	1045, 1236
EcoT22I	ATGCAT	2 cut(s)	571, 1130
FaeI	CATG	6 cut(s)	671, 839, 903, 940, 985, 1199
FatI	CATG	6 cut(s)	667, 835, 899, 936, 981, 1195
FauI	CCCGC	2 cut(s)	709, 1038
FbaI	TGATCA	1 cut(s)	946
Fnu4HI	GCNGC	5 cut(s)	541, 665, 941, 1099, 1144
FokI	GGATG	2 cut(s)	33, 647
Fsp4HI	GCNGC	5 cut(s)	541, 665, 941, 1099, 1144
FspBI	CTAG	1 cut(s)	1151
GluI	GCNGC	5 cut(s)	541, 665, 941, 1099, 1144
GsuI	CTGGAG	2 cut(s)	1029, 1220
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	6 cut(s)	671, 839, 903, 940, 985, 1199
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	1 cut(s)	975
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	1 cut(s)	886
Hpy166II	GTNNAC	2 cut(s)	554, 877
Hpy188I	TCNGA	7 cut(s)	91, 139, 250, 308, 325, 499, 865
Hpy188III	TCNNGA	2 cut(s)	347, 1172
Hpy8I	GTNNAC	2 cut(s)	554, 877
HpyAV	CCTTC	4 cut(s)	196, 366, 449, 1044
HpyCH4III	ACNGT	3 cut(s)	96, 117, 1187
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	111, 569, 645, 1106, 1128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 446
HpyF3I	CTNAG	3 cut(s)	161, 305, 606
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	6 cut(s)	671, 839, 903, 940, 985, 1199
Ksp22I	TGATCA	1 cut(s)	946
Kzo9I	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	3 cut(s)	927, 1085, 1130
LweI	GCATC	2 cut(s)	556, 1130
MaeI	CTAG	1 cut(s)	1151
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	472, 518, 673
MalI	GATC	7 cut(s)	252, 405, 481, 834, 948, 1176, 1303
MboI	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
MfeI	CAATTG	1 cut(s)	678
MhlI	GDGCHC	1 cut(s)	702
MluCI	AATT	8 cut(s)	214, 238, 678, 779, 846, 895, 955, 1249
MmeI	TCCRAC	2 cut(s)	1022, 1076
Mph1103I	ATGCAT	2 cut(s)	571, 1130
MseI	TTAA	5 cut(s)	270, 312, 399, 845, 1253
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	2 cut(s)	1047, 1238
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	1047, 1238
MwoI	GCNNNNNNNGC	2 cut(s)	157, 446
NdeII	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
NheI	GCTAGC	1 cut(s)	1150
NlaIII	CATG	6 cut(s)	671, 839, 903, 940, 985, 1199
NlaIV	GGNNCC	1 cut(s)	448
NmuCI	GTSAC	3 cut(s)	472, 518, 673
NsiI	ATGCAT	2 cut(s)	571, 1130
NspI	RCATGY	3 cut(s)	671, 940, 985
PceI	AGGCCT	1 cut(s)	275
PciI	ACATGT	1 cut(s)	981
PfeI	GAWTC	1 cut(s)	975
PkrI	GCNGC	5 cut(s)	542, 666, 942, 1100, 1145
Ple19I	CGATCG	1 cut(s)	1304
PscI	ACATGT	1 cut(s)	981
PshBI	ATTAAT	1 cut(s)	845
Psp6I	CCWGG	2 cut(s)	1045, 1236
PspGI	CCWGG	2 cut(s)	1045, 1236
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	3 cut(s)	429, 812, 1049
PsrI	GAACNNNNNNTAC	2 cut(s)	708, 740
PstNI	CAGNNNCTG	1 cut(s)	443
PvuI	CGATCG	1 cut(s)	1304
SaqAI	TTAA	5 cut(s)	270, 312, 399, 845, 1253
SatI	GCNGC	5 cut(s)	541, 665, 941, 1099, 1144
Sau3AI	GATC	7 cut(s)	250, 403, 479, 832, 946, 1174, 1301
Sau96I	GGNCC	3 cut(s)	429, 812, 1049
ScrFI	CCNGG	2 cut(s)	1047, 1238
SduI	GDGCHC	1 cut(s)	702
SfaNI	GCATC	2 cut(s)	556, 1130
SfcI	CTRYAG	2 cut(s)	154, 725
SinI	GGWCC	3 cut(s)	429, 812, 1049
Sse9I	AATT	8 cut(s)	214, 238, 678, 779, 846, 895, 955, 1249
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	6 cut(s)	341, 540, 664, 702, 972, 1031
SspMI	CTAG	1 cut(s)	1151
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	1045, 1236
TaaI	ACNGT	3 cut(s)	96, 117, 1187
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	4 cut(s)	362, 625, 1177, 1304
TasI	AATT	8 cut(s)	214, 238, 678, 779, 846, 895, 955, 1249
TauI	GCSGC	2 cut(s)	543, 667
TfiI	GAWTC	1 cut(s)	975
Tru1I	TTAA	5 cut(s)	270, 312, 399, 845, 1253
Tru9I	TTAA	5 cut(s)	270, 312, 399, 845, 1253
TscAI	CASTG	5 cut(s)	343, 481, 610, 775, 1190
TseFI	GTSAC	3 cut(s)	472, 518, 673
TseI	GCWGC	3 cut(s)	940, 1098, 1143
Tsp45I	GTSAC	3 cut(s)	472, 518, 673
TspDTI	ATGAA	8 cut(s)	17, 75, 178, 231, 888, 935, 981, 1274
TspRI	CASTG	5 cut(s)	343, 481, 610, 775, 1190
VpaK11BI	GGWCC	3 cut(s)	429, 812, 1049
VspI	ATTAAT	1 cut(s)	845
XagI	CCTNNNNNAGG	1 cut(s)	1044
XapI	RAATTY	3 cut(s)	779, 895, 1249
XceI	RCATGY	3 cut(s)	671, 940, 985
XspI	CTAG	1 cut(s)	1151
Zsp2I	ATGCAT	2 cut(s)	571, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.