Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000407.1

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Forward (+)

498 .. 3211

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000407.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgtccagtttttactggtcagcgtcagccccttcttggccaatcatacagttcctctatatttctaggcgcaccggtacaacgaacaccactctccctccacacaaaatgaaccctttgttgctttgtcttctaagtcttcttcttgtctcccatccttgcctttcttcttctgcttattcttcttcttcatctgaactgtttgaagcttggtgcaaacagtatggcaagtcatactcttcagaacaagaaaagctctacaggcttagtgtgtttgagcaaaatcttgccttcattactcaacacaatgatttgggcaattcttcttacaccctttctctcaattcattttctgatcttgcccaccacgagtttaaggcctctcggttaggattttcgcctacgtttctcagacttaaccggaaatcagacccaaaacccagtgcggttcgtgatgttccttcttcgattgattggaggaagaatggagctgtgaccaatgttaaagatcaaggcagttgtggtgcttgttggtccttttcagcaactggtgccattgaaggtatcaacaagattgtcactggatcacttgtcagcctctccgaacaagagttgattgattgtgacagagtttatccaaatagcggctgtgatggtggactgatggacgatgcatttcagtttatcatagataacaatgggattgacactgaggaggattacccgtatcgaggtgtggatggcacttgcaataagcaaaagttgaagcggcatgttgtgacaattgatggctatactgatgtgcccgcaaatgatgaggaacaactcctacaggctgtggcaaggcaacctgtgagtgtaggtatagctggcagtggcagggaatttcagttctactcaaaggggatttttgctggtccttgttcaacttctttggatcatgctgtattaattgtaggttatggttcagaaaatggggtgaactattggattgtaaagaattcatggggtaagaactggggaatgaatggctatattcacatgctgcgtgatcatagcaattccaaaggggtctgcggaatcaacatgttggcttcatatccaacaaagactggggaaaaccctccttttcccccgccttcccctcctccaggtccaactaaatgtgatatcttttccaagtgtggagttggggaaacctgctgctgtgcaaagaagttttttggaatatgcctttcttggagatgctgcgagctaggctctgctgtttgttgtcaggatcgacttcactgttgcccccatgattatcctatttgtgatgcagagaggaacttctgcctccaggctaacgggaatttaacaatgaaagcaaatgagagtagaggcagtttgggaaagtcaagccgatcgaaagcaaagttgttctattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

477

Amino Acids

52.53

Weight (kDa)

7.41

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1208
AccB1I	GGYRCC	1 cut(s)	551
AciI	CCGC	6 cut(s)	446, 645, 769, 807, 1077, 1136
AclWI	GGATC	3 cut(s)	592, 945, 1287
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	3 cut(s)	884, 1000, 1354
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	4 cut(s)	36, 644, 731, 1151
AflIII	ACRYGT	1 cut(s)	1086
AgeI	ACCGGT	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	206, 560, 766, 927
AjnI	CCWGG	2 cut(s)	1150, 1341
AloI	GAACNNNNNNTCC	2 cut(s)	875, 907
AluBI	AGCT	5 cut(s)	209, 256, 491, 869, 1255
AluI	AGCT	5 cut(s)	209, 256, 491, 869, 1255
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	3 cut(s)	592, 945, 1287
AlwNI	CAGNNNCTG	1 cut(s)	548
AoxI	GGCC	2 cut(s)	38, 378
ApeKI	GCWGC	3 cut(s)	1045, 1203, 1248
ApoI	RAATTY	3 cut(s)	884, 1000, 1354
AseI	ATTAAT	1 cut(s)	950
AsiGI	ACCGGT	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	3 cut(s)	534, 917, 1154
AsuHPI	GGTGA	1 cut(s)	991
AvaII	GGWCC	3 cut(s)	534, 917, 1154
BaeGI	GKGCMC	1 cut(s)	807
BalI	TGGCCA	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	551
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	122, 131
BbvI	GCAGC	3 cut(s)	1032, 1190, 1235
BccI	CCATC	5 cut(s)	162, 647, 658, 734, 782
BciT130I	CCWGG	2 cut(s)	1152, 1343
BclI	TGATCA	1 cut(s)	1051
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	66, 1256
BfmI	CTRYAG	2 cut(s)	259, 830
BfuAI	ACCTGC	1 cut(s)	1208
BisI	GCNGC	5 cut(s)	646, 770, 1046, 1204, 1249
BlsI	GCNGC	5 cut(s)	647, 771, 1047, 1205, 1250
Bme1390I	CCNGG	2 cut(s)	1152, 1343
Bme18I	GGWCC	3 cut(s)	534, 917, 1154
BmgT120I	GGNCC	3 cut(s)	534, 917, 1154
BmiI	GGNNCC	1 cut(s)	553
BmrFI	CCNGG	2 cut(s)	1152, 1343
BmrI	ACTGGG	3 cut(s)	435, 1027, 1122
BmsI	GCATC	3 cut(s)	661, 1235, 1309
BmuI	ACTGGG	3 cut(s)	435, 1027, 1122
BpiI	GAAGAC	2 cut(s)	122, 131
BplI	GAGNNNNNCTC	2 cut(s)	1244, 1276
BpmI	CTGGAG	2 cut(s)	1134, 1325
BsaWI	WCCGGW	2 cut(s)	74, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 644, 731, 1151
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	7 cut(s)	6, 20, 441, 553, 586, 1022, 1117
BseBI	CCWGG	2 cut(s)	1152, 1343
BseGI	GGATG	2 cut(s)	154, 745
BseLI	CCNNNNNNNGG	4 cut(s)	36, 644, 731, 1151
BseMII	CTCAG	2 cut(s)	424, 702
BseNI	ACTGG	7 cut(s)	6, 20, 441, 553, 586, 1022, 1117
BseRI	GAGGAG	2 cut(s)	728, 1137
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	3 cut(s)	1032, 1190, 1235
Bsh1285I	CGRYCG	1 cut(s)	1409
BshFI	GGCC	2 cut(s)	40, 380
BshNI	GGYRCC	1 cut(s)	551
BshTI	ACCGGT	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	1409
BsiSI	CCGG	2 cut(s)	75, 421
BslI	CCNNNNNNNGG	4 cut(s)	36, 644, 731, 1151
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	2 cut(s)	40, 380
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
BspACI	CCGC	6 cut(s)	446, 645, 769, 807, 1077, 1136
BspANI	GGCC	2 cut(s)	40, 380
BspCNI	CTCAG	2 cut(s)	423, 703
BspLI	GGNNCC	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	1208
BspPI	GGATC	3 cut(s)	592, 945, 1287
BspT107I	GGYRCC	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	7 cut(s)	6, 20, 441, 553, 586, 1022, 1117
BssAI	RCCGGY	1 cut(s)	74
BssMI	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	2 cut(s)	1152, 1343
Bst4CI	ACNGT	4 cut(s)	51, 201, 222, 1292
Bst6I	CTCTTC	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	807, 871, 1253
BstDEI	CTNAG	4 cut(s)	134, 266, 410, 711
BstENI	CCTNNNNNAGG	1 cut(s)	1149
BstF5I	GGATG	2 cut(s)	154, 745
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	7 cut(s)	358, 511, 587, 940, 1054, 1282, 1409
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
BstMCI	CGRYCG	1 cut(s)	1409
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 551, 1257
BstNI	CCWGG	2 cut(s)	1152, 1343
BstNSI	RCATGY	3 cut(s)	776, 1045, 1090
BstSCI	CCNGG	2 cut(s)	1150, 1341
BstSFI	CTRYAG	2 cut(s)	259, 830
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	3 cut(s)	1032, 1190, 1235
BstV2I	GAAGAC	2 cut(s)	122, 131
BsuRI	GGCC	2 cut(s)	40, 380
BtsCI	GGATG	2 cut(s)	154, 745
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	5 cut(s)	448, 579, 708, 880, 1288
BveI	ACCTGC	1 cut(s)	1208
Cac8I	GCNNGC	3 cut(s)	807, 871, 1253
CaiI	CAGNNNCTG	1 cut(s)	548
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	534, 917, 1154
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	74
CviAII	CATG	6 cut(s)	773, 941, 1005, 1042, 1087, 1301
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	4 cut(s)	134, 266, 410, 711
DpnI	GATC	7 cut(s)	357, 510, 586, 939, 1053, 1281, 1408
DpnII	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
EaeI	YGGCCR	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	1171
Eco47I	GGWCC	3 cut(s)	534, 917, 1154
Eco57I	CTGAAG	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	1149
EcoRI	GAATTC	1 cut(s)	1000
EcoRII	CCWGG	2 cut(s)	1150, 1341
EcoRV	GATATC	1 cut(s)	1171
EcoT22I	ATGCAT	1 cut(s)	676
FaeI	CATG	6 cut(s)	776, 944, 1008, 1045, 1090, 1304
FatI	CATG	6 cut(s)	772, 940, 1004, 1041, 1086, 1300
FauI	CCCGC	2 cut(s)	814, 1143
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	5 cut(s)	646, 770, 1046, 1204, 1249
FokI	GGATG	2 cut(s)	141, 752
Fsp4HI	GCNGC	5 cut(s)	646, 770, 1046, 1204, 1249
FspBI	CTAG	2 cut(s)	66, 1256
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	5 cut(s)	646, 770, 1046, 1204, 1249
GsuI	CTGGAG	2 cut(s)	1134, 1325
HaeIII	GGCC	2 cut(s)	40, 380
HapII	CCGG	2 cut(s)	75, 421
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	6 cut(s)	776, 944, 1008, 1045, 1090, 1304
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	1080
HpaII	CCGG	2 cut(s)	75, 421
HphI	GGTGA	1 cut(s)	991
Hpy166II	GTNNAC	2 cut(s)	659, 982
Hpy188I	TCNGA	7 cut(s)	196, 244, 355, 413, 430, 604, 970
Hpy188III	TCNNGA	2 cut(s)	452, 1277
Hpy8I	GTNNAC	2 cut(s)	659, 982
HpyAV	CCTTC	5 cut(s)	42, 301, 471, 554, 1149
HpyCH4III	ACNGT	4 cut(s)	51, 201, 222, 1292
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	5 cut(s)	216, 674, 750, 1211, 1322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 551, 1257
HpyF3I	CTNAG	4 cut(s)	134, 266, 410, 711
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	6 cut(s)	776, 944, 1008, 1045, 1090, 1304
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	3 cut(s)	1032, 1190, 1235
LweI	GCATC	3 cut(s)	661, 1235, 1309
MaeI	CTAG	2 cut(s)	66, 1256
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	4 cut(s)	493, 577, 623, 778
MalI	GATC	7 cut(s)	357, 510, 586, 939, 1053, 1281, 1408
MboI	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	807
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	8 cut(s)	319, 343, 783, 884, 951, 1000, 1060, 1354
MluNI	TGGCCA	1 cut(s)	40
MmeI	TCCRAC	2 cut(s)	1127, 1181
Mox20I	TGGCCA	1 cut(s)	40
Mph1103I	ATGCAT	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	5 cut(s)	375, 417, 504, 950, 1358
Msp20I	TGGCCA	1 cut(s)	40
MspI	CCGG	2 cut(s)	75, 421
MspR9I	CCNGG	2 cut(s)	1152, 1343
MunI	CAATTG	1 cut(s)	783
MvaI	CCWGG	2 cut(s)	1152, 1343
MwoI	GCNNNNNNNGC	3 cut(s)	262, 551, 1257
NdeII	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
NlaIII	CATG	6 cut(s)	776, 944, 1008, 1045, 1090, 1304
NlaIV	GGNNCC	1 cut(s)	553
NmuCI	GTSAC	4 cut(s)	493, 577, 623, 778
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	3 cut(s)	776, 1045, 1090
PceI	AGGCCT	1 cut(s)	380
PciI	ACATGT	1 cut(s)	1086
PfeI	GAWTC	1 cut(s)	1080
PinAI	ACCGGT	1 cut(s)	74
PkrI	GCNGC	5 cut(s)	647, 771, 1047, 1205, 1250
Ple19I	CGATCG	1 cut(s)	1409
PscI	ACATGT	1 cut(s)	1086
PshBI	ATTAAT	1 cut(s)	950
Psp6I	CCWGG	2 cut(s)	1150, 1341
PspGI	CCWGG	2 cut(s)	1150, 1341
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	3 cut(s)	534, 917, 1154
PsrI	GAACNNNNNNTAC	2 cut(s)	813, 845
PstNI	CAGNNNCTG	1 cut(s)	548
PvuI	CGATCG	1 cut(s)	1409
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SaqAI	TTAA	5 cut(s)	375, 417, 504, 950, 1358
SatI	GCNGC	5 cut(s)	646, 770, 1046, 1204, 1249
Sau3AI	GATC	7 cut(s)	355, 508, 584, 937, 1051, 1279, 1406
Sau96I	GGNCC	3 cut(s)	534, 917, 1154
ScrFI	CCNGG	2 cut(s)	1152, 1343
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	3 cut(s)	661, 1235, 1309
SfcI	CTRYAG	2 cut(s)	259, 830
SinI	GGWCC	3 cut(s)	534, 917, 1154
Sse9I	AATT	8 cut(s)	319, 343, 783, 884, 951, 1000, 1060, 1354
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	6 cut(s)	446, 645, 769, 807, 1077, 1136
SspMI	CTAG	2 cut(s)	66, 1256
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	1150, 1341
TaaI	ACNGT	4 cut(s)	51, 201, 222, 1292
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	4 cut(s)	467, 730, 1282, 1409
TasI	AATT	8 cut(s)	319, 343, 783, 884, 951, 1000, 1060, 1354
TauI	GCSGC	2 cut(s)	648, 772
TfiI	GAWTC	1 cut(s)	1080
Tru1I	TTAA	5 cut(s)	375, 417, 504, 950, 1358
Tru9I	TTAA	5 cut(s)	375, 417, 504, 950, 1358
TscAI	CASTG	5 cut(s)	448, 586, 715, 880, 1295
TseFI	GTSAC	4 cut(s)	493, 577, 623, 778
TseI	GCWGC	3 cut(s)	1045, 1203, 1248
Tsp45I	GTSAC	4 cut(s)	493, 577, 623, 778
TspDTI	ATGAA	8 cut(s)	125, 180, 283, 336, 993, 1040, 1086, 1379
TspRI	CASTG	5 cut(s)	448, 586, 715, 880, 1295
VpaK11BI	GGWCC	3 cut(s)	534, 917, 1154
VspI	ATTAAT	1 cut(s)	950
XagI	CCTNNNNNAGG	1 cut(s)	1149
XapI	RAATTY	3 cut(s)	884, 1000, 1354
XceI	RCATGY	3 cut(s)	776, 1045, 1090
XspI	CTAG	2 cut(s)	66, 1256
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.