Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016666

Physical Location & Seq

Genomic Coordinates Forward (+)

7786824 .. 7789868

Gene Structure 3045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAACCCTTTGTTGCTTTGTCTTCTAACTCTTCTTCTTGTCTCCCATGTTTGCCTTTCTTCTTCTTCTTCTTCATCTGAACTGTTTGAAGCTTGGTGCAAACAGTATGGCAAGTCATACCCTTCAGAACAAGAAAAGCTCTACAGGCTTGGTGTGTTTGAGCAAAATTTTGCCTTCATTACTCAACACAATGATTTGGGCAATTCTTCTTACACCCTTTCTCTCAATTCATTTTCTGATCTTGCCCACCACGAGTTTAAGGCCTCTCGGTTAGGATTTTCGCCTACGTTTCTCAGACTTAACCGGAAATCAGACCCAAAACCCAGTGCGGTTCGTGATGTTCCTTCTTCGATTGATTGGAGGAAGAATGGAGCTGTGACCAATGTTAAAGATCAAGGCAGTTGTGGTGCTTGTTGGTCCTTTTCAGCAACTGGTGCCATTGAAGGTATCAACAAGATTGTCACGGGATCACTTGTCAGCCTCTCCGAACAAGAGTTGATTGATTGTGACAGAGTTTATCCAAATAGCGGCTGTGATGGTGGACTGATGGACGATGCATTTCAGTTTATCATAGATAACAATGGGATTGACACTGAGGAGGATTACCCGTATCGAGGTGTGGATGGCACTTGCAATAAGCAAAAGTTGAAGAGGCATGTTGTGACAATTGATGGCTATACTGATGTGCCCCCAAATGATGAGGAACAACTCCTACAGGCTGTGGCAAGGCAACCTGTGAGTGTAGGTATAGCTGGCAGTGGCAGGGAATTTCAGTTCTACTCAAAGGGGATTTTTGCTGGCCCTTGTTCAACTTCTTTGGATCATGCTGTATTAATTGTAGGTTATGGTTCAGAAAACGGGGTGAACTATTGGATTGTAAAGAATTCATGGGGTAAGAACTGGGGAATGAATGGCTATATTCACATGCTGCGTGATCATAGCAATTCCAAAGGGGTCTGCGGAATCAACATGTTGGCTTCATATCCAACAAAGACTGGGGAAAACCCTCCTTTTCCCCCGCCTTCCCCTCCTCCAGGTCCAACTAAATGTGATATCTTTTCCAAGTGTGGAGTTGGGGAAACCTGCTGCTGTGCAAAGAAGTTTTTTGGAATATGCCTTTCTTGGAGATGCTGCGAGCTAGCCTCTGCTGTTTGTTGTAAGGATCGACTTCACTGTTGCCCCCATGATTATCCTATTTGTGATACAGAGAGGAACTTCTGCCTCCAGGCTAACGGGAATTTAACAATGAAAGCAAATGAGAGTAGAGGCAGTTTGGGAAAGTCAAGCCGATCGAAAGCAAAGTTGTTCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

438

Amino Acids

48.19

Weight (kDa)

6.77

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	29 - 86	2.7e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	114 - 330	7.3e-84	Papain family cysteine protease
Granulin	PF00396	361 - 408	1.5e-09	Granulin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09850
fragaria_vesca	FvH4_2g38850
malus_domestica	MD08G1023300.v1.1
prunus_persica	Prupe.1G372500_v2.0.a1
pyrus_communis	pycom08g01810
rosa_chinensis	RchiOBHm_Chr6g0301951
rosa_laevigata	RLG00000011206
rosa_multiflora	Rmu_sc0000407.1_g000001
rosa_roxburghii	Rroxscaffold_7G00166250
rosa_rugosa	Rorug06G0310500
rosa_samantha	Rh6AG422900 Rh6BG429700 Rh6CG436100
rosa_wichuraiana	Rw6G036630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1091
AccB1I	GGYRCC	1 cut(s)	434
AciI	CCGC	4 cut(s)	329, 528, 960, 1019
AclWI	GGATC	3 cut(s)	475, 828, 1170
AcsI	RAATTY	4 cut(s)	166, 767, 883, 1237
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	527, 614, 1034
AflIII	ACRYGT	1 cut(s)	969
AgsI	TTSAA	4 cut(s)	89, 443, 649, 810
AjnI	CCWGG	2 cut(s)	1033, 1224
AloI	GAACNNNNNNTCC	2 cut(s)	758, 790
AluBI	AGCT	5 cut(s)	92, 139, 374, 752, 1138
AluI	AGCT	5 cut(s)	92, 139, 374, 752, 1138
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	3 cut(s)	475, 828, 1170
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	261, 799
ApeKI	GCWGC	3 cut(s)	928, 1086, 1131
ApoI	RAATTY	4 cut(s)	166, 767, 883, 1237
AseI	ATTAAT	1 cut(s)	833
AspS9I	GGNCC	3 cut(s)	417, 800, 1037
AsuHPI	GGTGA	1 cut(s)	874
AsuNHI	GCTAGC	1 cut(s)	1138
AvaII	GGWCC	2 cut(s)	417, 1037
BaeGI	GKGCMC	1 cut(s)	690
BanI	GGYRCC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	915, 1073, 1118
BccI	CCATC	4 cut(s)	530, 541, 617, 665
BciT130I	CCWGG	2 cut(s)	1035, 1226
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	1139
BfmI	CTRYAG	2 cut(s)	142, 713
BfuAI	ACCTGC	1 cut(s)	1091
BisI	GCNGC	4 cut(s)	529, 929, 1087, 1132
BlsI	GCNGC	4 cut(s)	530, 930, 1088, 1133
Bme1390I	CCNGG	2 cut(s)	1035, 1226
Bme18I	GGWCC	2 cut(s)	417, 1037
BmgT120I	GGNCC	3 cut(s)	417, 800, 1037
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	1035, 1226
BmrI	ACTGGG	3 cut(s)	318, 910, 1005
BmsI	GCATC	2 cut(s)	544, 1118
BmtI	GCTAGC	1 cut(s)	1142
BmuI	ACTGGG	3 cut(s)	318, 910, 1005
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	1127, 1159
BpmI	CTGGAG	2 cut(s)	1017, 1208
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 614, 1034
Bse1I	ACTGG	4 cut(s)	324, 436, 905, 1000
BseBI	CCWGG	2 cut(s)	1035, 1226
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	3 cut(s)	527, 614, 1034
BseMII	CTCAG	2 cut(s)	307, 585
BseNI	ACTGG	4 cut(s)	324, 436, 905, 1000
BseRI	GAGGAG	2 cut(s)	611, 1020
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	3 cut(s)	915, 1073, 1118
Bsh1285I	CGRYCG	1 cut(s)	1292
BshFI	GGCC	2 cut(s)	263, 801
BshNI	GGYRCC	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	1292
BsiSI	CCGG	1 cut(s)	304
BslI	CCNNNNNNNGG	3 cut(s)	527, 614, 1034
BsmAI	GTCTC	1 cut(s)	46
BsnI	GGCC	2 cut(s)	263, 801
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp143I	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
BspACI	CCGC	4 cut(s)	329, 528, 960, 1019
BspANI	GGCC	2 cut(s)	263, 801
BspCNI	CTCAG	2 cut(s)	306, 586
BspLI	GGNNCC	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	1091
BspOI	GCTAGC	1 cut(s)	1142
BspPI	GGATC	3 cut(s)	475, 828, 1170
BspT107I	GGYRCC	1 cut(s)	434
BsrI	ACTGG	4 cut(s)	324, 436, 905, 1000
BssMI	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	1035, 1226
Bst4CI	ACNGT	3 cut(s)	84, 105, 1175
Bst6I	CTCTTC	2 cut(s)	36, 644
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	4 cut(s)	754, 799, 1136, 1140
BstDEI	CTNAG	2 cut(s)	293, 594
BstENI	CCTNNNNNAGG	1 cut(s)	1032
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	7 cut(s)	241, 394, 470, 823, 937, 1165, 1292
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
BstMCI	CGRYCG	1 cut(s)	1292
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 434
BstNI	CCWGG	2 cut(s)	1035, 1226
BstNSI	RCATGY	3 cut(s)	659, 928, 973
BstSCI	CCNGG	2 cut(s)	1033, 1224
BstSFI	CTRYAG	2 cut(s)	142, 713
BstSLI	GKGCMC	1 cut(s)	690
BstV1I	GCAGC	3 cut(s)	915, 1073, 1118
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	263, 801
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	4 cut(s)	331, 591, 763, 1171
BveI	ACCTGC	1 cut(s)	1091
Cac8I	GCNNGC	4 cut(s)	754, 799, 1136, 1140
CaiI	CAGNNNCTG	1 cut(s)	431
Cfr13I	GGNCC	3 cut(s)	417, 800, 1037
CviAII	CATG	7 cut(s)	47, 656, 824, 888, 925, 970, 1184
DdeI	CTNAG	2 cut(s)	293, 594
DpnI	GATC	7 cut(s)	240, 393, 469, 822, 936, 1164, 1291
DpnII	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
Eam1104I	CTCTTC	2 cut(s)	36, 644
EarI	CTCTTC	2 cut(s)	36, 644
Eco147I	AGGCCT	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	1054
Eco47I	GGWCC	2 cut(s)	417, 1037
Eco57I	CTGAAG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	1032
EcoRI	GAATTC	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	1033, 1224
EcoRV	GATATC	1 cut(s)	1054
EcoT22I	ATGCAT	1 cut(s)	559
FaeI	CATG	7 cut(s)	50, 659, 827, 891, 928, 973, 1187
FatI	CATG	7 cut(s)	46, 655, 823, 887, 924, 969, 1183
FauI	CCCGC	1 cut(s)	1026
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	4 cut(s)	529, 929, 1087, 1132
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	4 cut(s)	529, 929, 1087, 1132
FspBI	CTAG	1 cut(s)	1139
GluI	GCNGC	4 cut(s)	529, 929, 1087, 1132
GsuI	CTGGAG	2 cut(s)	1017, 1208
HaeIII	GGCC	2 cut(s)	263, 801
HapII	CCGG	1 cut(s)	304
Hin1II	CATG	7 cut(s)	50, 659, 827, 891, 928, 973, 1187
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	963
HpaII	CCGG	1 cut(s)	304
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	2 cut(s)	542, 865
Hpy188I	TCNGA	7 cut(s)	79, 127, 238, 296, 313, 487, 853
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	2 cut(s)	542, 865
HpyAV	CCTTC	5 cut(s)	132, 184, 354, 437, 1032
HpyCH4III	ACNGT	3 cut(s)	84, 105, 1175
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	4 cut(s)	99, 557, 633, 1094
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 434
HpyF3I	CTNAG	2 cut(s)	293, 594
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	7 cut(s)	50, 659, 827, 891, 928, 973, 1187
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	3 cut(s)	915, 1073, 1118
LweI	GCATC	2 cut(s)	544, 1118
MaeI	CTAG	1 cut(s)	1139
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	4 cut(s)	376, 460, 506, 661
MalI	GATC	7 cut(s)	240, 393, 469, 822, 936, 1164, 1291
MboI	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
MfeI	CAATTG	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	9 cut(s)	166, 202, 226, 666, 767, 834, 883, 943, 1237
MmeI	TCCRAC	2 cut(s)	1010, 1064
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	5 cut(s)	258, 300, 387, 833, 1241
MspI	CCGG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	1035, 1226
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	2 cut(s)	1035, 1226
MwoI	GCNNNNNNNGC	2 cut(s)	145, 434
NdeII	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
NheI	GCTAGC	1 cut(s)	1138
NlaIII	CATG	7 cut(s)	50, 659, 827, 891, 928, 973, 1187
NlaIV	GGNNCC	1 cut(s)	436
NmuCI	GTSAC	4 cut(s)	376, 460, 506, 661
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	3 cut(s)	659, 928, 973
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	1 cut(s)	969
PfeI	GAWTC	1 cut(s)	963
PkrI	GCNGC	4 cut(s)	530, 930, 1088, 1133
Ple19I	CGATCG	1 cut(s)	1292
PscI	ACATGT	1 cut(s)	969
PshBI	ATTAAT	1 cut(s)	833
Psp6I	CCWGG	2 cut(s)	1033, 1224
PspGI	CCWGG	2 cut(s)	1033, 1224
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	3 cut(s)	417, 800, 1037
PsrI	GAACNNNNNNTAC	2 cut(s)	696, 728
PstNI	CAGNNNCTG	1 cut(s)	431
PvuI	CGATCG	1 cut(s)	1292
SaqAI	TTAA	5 cut(s)	258, 300, 387, 833, 1241
SatI	GCNGC	4 cut(s)	529, 929, 1087, 1132
Sau3AI	GATC	7 cut(s)	238, 391, 467, 820, 934, 1162, 1289
Sau96I	GGNCC	3 cut(s)	417, 800, 1037
ScrFI	CCNGG	2 cut(s)	1035, 1226
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	2 cut(s)	544, 1118
SfcI	CTRYAG	2 cut(s)	142, 713
SinI	GGWCC	2 cut(s)	417, 1037
Sse9I	AATT	9 cut(s)	166, 202, 226, 666, 767, 834, 883, 943, 1237
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	4 cut(s)	329, 528, 960, 1019
SspMI	CTAG	1 cut(s)	1139
StuI	AGGCCT	1 cut(s)	263
StyD4I	CCNGG	2 cut(s)	1033, 1224
TaaI	ACNGT	3 cut(s)	84, 105, 1175
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	350, 613, 1165, 1292
TasI	AATT	9 cut(s)	166, 202, 226, 666, 767, 834, 883, 943, 1237
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	963
Tru1I	TTAA	5 cut(s)	258, 300, 387, 833, 1241
Tru9I	TTAA	5 cut(s)	258, 300, 387, 833, 1241
TscAI	CASTG	4 cut(s)	331, 598, 763, 1178
TseFI	GTSAC	4 cut(s)	376, 460, 506, 661
TseI	GCWGC	3 cut(s)	928, 1086, 1131
Tsp45I	GTSAC	4 cut(s)	376, 460, 506, 661
TspDTI	ATGAA	8 cut(s)	17, 63, 166, 219, 876, 923, 969, 1262
TspRI	CASTG	4 cut(s)	331, 598, 763, 1178
VpaK11BI	GGWCC	2 cut(s)	417, 1037
VspI	ATTAAT	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	1032
XapI	RAATTY	4 cut(s)	166, 767, 883, 1237
XceI	RCATGY	3 cut(s)	659, 928, 973
XspI	CTAG	1 cut(s)	1139
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.