AT1G09920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012125
Physical Location & Seq
Reverse (-)
3224684 .. 3227083
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09920.1

Sequence Viewer

Length: 579 bp
ATGGAGACTGCGACTGGAGAAATCACCATCGTCTGCAACCACTGTGACAGAGACATTCCATCACTGAATATCGATCTGCATCGTGTACATTGTGCTCGGAATTTAGAAAAATGTAAGATTTGTGGTGATATGGTACCCAAAAAGCATGCTGAGGAACACTACTTGAACACACATGCTCCGATAGCATGCTCGATGTGCAAAGAGACCATAGAACGTGAGATTTTCGATAGTCATAAAGGAGAAATTTGCCCCAAGAGGATTGTAACATGCGAGTTCTGTGAGTTTCCATTGCCTGCGGTTGATCTTGCCGAGCATCAGGAAGTATGTGGCAACAGGACAGAACTCTGTTATCAATGCAACAGCTATGTTAGATTGAGAGAAAGATATAACCATGAAACCAAATGCCCTGGCACTGTTGAATCATCCAGAAGGATCCCGAGAGCAGCAGAAGGAGATGGAAACGGGAGAAGACGAAGAGATGGGAACGGTGTTTCGAACAAAAGGCTTTTCTTCACGATAGCAATAACGGGAATAGCTGTGATAATAGGATCCTTGTTCTTCCAGAGGAAGCCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

7.52

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09920
fragaria_vesca FvH4_5g34100 FvH4_5g34100
malus_domestica MD08G1206200.v1.1 MD15G1389500.v1.1
prunus_persica Prupe.1G538600_v2.0.a1 Prupe.1G538600_v2.0.a1
pyrus_communis pycom08g17820 pycom15g34910
rosa_chinensis RchiOBHm_Chr7g0233601
rosa_laevigata RLG00000001250
rosa_multiflora Rmu_sc0003712.1_g000011
rosa_roxburghii Rroxscaffold_3G00227120
rosa_rugosa Rorug07G0281400
rosa_samantha Rh7AG438000 Rh7BG410700 Rh7CG457600 Rh7DG426900
rosa_wichuraiana Rw7G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 133
AciI CCGC 1 cut(s) 296
AclWI GGATC 4 cut(s) 427, 440, 543, 556
AcsI RAATTY 2 cut(s) 100, 243
AfaI GTAC 2 cut(s) 87, 135
AgsI TTSAA 2 cut(s) 166, 419
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 2 cut(s) 363, 536
AluI AGCT 2 cut(s) 363, 536
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 45, 197
AlwI GGATC 4 cut(s) 427, 440, 543, 556
Ama87I CYCGRG 1 cut(s) 436
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 2 cut(s) 100, 243
Asp718I GGTACC 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 16, 137
AsuII TTCGAA 1 cut(s) 494
AvaI CYCGRG 1 cut(s) 436
BamHI GGATCC 2 cut(s) 432, 548
BanI GGYRCC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 455
BccI CCATC 4 cut(s) 35, 67, 449, 473
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 45, 197
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 408
BmeT110I CYCGRG 1 cut(s) 436
BmiI GGNNCC 3 cut(s) 135, 434, 550
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 2 cut(s) 88, 322
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 287
Bse8I GATNNNNATC 1 cut(s) 78
BseBI CCWGG 1 cut(s) 408
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 422
BseJI GATNNNNATC 1 cut(s) 78
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 2 cut(s) 141, 564
BseNI ACTGG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 455
BshNI GGYRCC 1 cut(s) 133
BshVI ATCGAT 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 436
BsmAI GTCTC 2 cut(s) 45, 197
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 436
Bsp119I TTCGAA 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 97
Bsp1407I TGTACA 1 cut(s) 85
Bsp143I GATC 4 cut(s) 73, 301, 432, 548
BspACI CCGC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 142, 565
BspDI ATCGAT 1 cut(s) 72
BspLI GGNNCC 3 cut(s) 135, 434, 550
BspPI GGATC 4 cut(s) 427, 440, 543, 556
BspT104I TTCGAA 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 85
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 4 cut(s) 73, 301, 432, 548
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 44, 415, 488
Bst6I CTCTTC 1 cut(s) 469
BstAUI TGTACA 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 147, 187, 294
BstDEI CTNAG 2 cut(s) 150, 573
BstF5I GGATG 1 cut(s) 422
BstKTI GATC 4 cut(s) 76, 304, 435, 551
BstMAI GTCTC 2 cut(s) 45, 197
BstMBI GATC 4 cut(s) 73, 301, 432, 548
BstMWI GCNNNNNNNGC 2 cut(s) 182, 195
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 4 cut(s) 149, 176, 189, 270
BstSCI CCNGG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 2 cut(s) 432, 548
BstYI RGATCY 2 cut(s) 432, 548
Bsu15I ATCGAT 1 cut(s) 72
BsuTUI ATCGAT 1 cut(s) 72
BtsCI GGATG 1 cut(s) 422
BtsIMutI CAGTG 3 cut(s) 40, 62, 411
Cac8I GCNNGC 3 cut(s) 147, 187, 294
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 2 cut(s) 86, 134
CviAII CATG 5 cut(s) 146, 173, 186, 267, 392
CviJI RGCY 4 cut(s) 363, 505, 536, 571
CviKI_1 RGCY 4 cut(s) 363, 505, 536, 571
CviQI GTAC 2 cut(s) 86, 134
DdeI CTNAG 2 cut(s) 150, 573
DpnI GATC 4 cut(s) 75, 303, 434, 550
DpnII GATC 4 cut(s) 73, 301, 432, 548
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 406
FaeI CATG 5 cut(s) 149, 176, 189, 270, 395
FatI CATG 5 cut(s) 145, 172, 185, 266, 391
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 36
Hin1II CATG 5 cut(s) 149, 176, 189, 270, 395
HinfI GANTC 1 cut(s) 419
HphI GGTGA 2 cut(s) 16, 137
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 99, 180
Hpy188III TCNNGA 5 cut(s) 317, 426, 436, 514, 562
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 2 cut(s) 423, 443
HpyCH4III ACNGT 3 cut(s) 44, 415, 488
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 36, 79, 198, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 195
HpyF3I CTNAG 2 cut(s) 150, 573
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 5 cut(s) 149, 176, 189, 270, 395
KpnI GGTACC 1 cut(s) 137
Kzo9I GATC 4 cut(s) 73, 301, 432, 548
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 7 cut(s) 302, 306, 319, 393, 420, 439, 575
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 2 cut(s) 88, 322
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 44, 262
MalI GATC 4 cut(s) 75, 303, 434, 550
MboI GATC 4 cut(s) 73, 301, 432, 548
MboII GAAGA 4 cut(s) 480, 486, 502, 550
MflI RGATCY 2 cut(s) 432, 548
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 100, 243
MnlI CCTC 3 cut(s) 145, 249, 558
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 182, 195
NdeII GATC 4 cut(s) 73, 301, 432, 548
NlaIII CATG 5 cut(s) 149, 176, 189, 270, 395
NlaIV GGNNCC 3 cut(s) 135, 434, 550
NmeAIII GCCGAG 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 44
NspI RCATGY 4 cut(s) 149, 176, 189, 270
NspV TTCGAA 1 cut(s) 494
PaeI GCATGC 2 cut(s) 149, 189
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 135, 434, 550
PsuI RGATCY 2 cut(s) 432, 548
RsaI GTAC 2 cut(s) 87, 135
RsaNI GTAC 2 cut(s) 86, 134
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 4 cut(s) 73, 301, 432, 548
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 97
SetI ASST 3 cut(s) 217, 365, 538
SfaNI GCATC 2 cut(s) 88, 322
SfuI TTCGAA 1 cut(s) 494
SphI GCATGC 2 cut(s) 149, 189
Sse9I AATT 2 cut(s) 100, 243
SsiI CCGC 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 3 cut(s) 44, 415, 488
TaiI ACGT 1 cut(s) 217
TaqI TCGA 4 cut(s) 72, 191, 225, 494
TasI AATT 2 cut(s) 100, 243
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 1 cut(s) 419
TscAI CASTG 3 cut(s) 47, 69, 418
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 3 cut(s) 47, 69, 418
XapI RAATTY 2 cut(s) 100, 243
XceI RCATGY 4 cut(s) 149, 176, 189, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.