Prupe.1G538600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012125
Physical Location & Seq
Reverse (-)
44013245 .. 44017235
3991 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G538600.2

Sequence Viewer

Length: 603 bp
ATGGCTGTTGCATCTGAAGGAGCAACTATAATATGCAATCACTGTGACAGAGCTGTCCCCTCGTCAAATATTGATTTGCATTCTGCTCATTGCTTCCGCAATCTAGAAAAATGTAAAGTCTGTGGTGATATGGTTCCGAAAAAATATGCTAAGGAACATTACTCGGACACCCATGCTCCGGTAGCCTGTTCACTTTGTAGCGAGACAATGGAACGTGAAATATTAGCTGTCCACAAAGGTGAAAATTGCCCTCAAAGAATTGTCACATGTGAGTTCTGTGAGTTCCCATTGCCTGCAATTGATCTAGCTGAGCATCAGGAAGTATGTGGGAATCGGACGGAACTTTGTCATCTTTGTAACAAATACATTAGACTGCGAGAAAGATACAACCATGAAATTAGCTGCACTGGTGTCCCAGATAATACCGTGTCATCTTCCAGGGATGCTAGGGCTGCTGAAAGAGGGCAAGGTCCCCAAAGAAGACAGCCGAATGAGTTTTCACGGAAACGGCTTATATTCACCATTGCACTAACAGGCATTGCTGTCCTATTAGGATCGCTATTTTTCGGGAGAAAGACAGAAGACAATCAAGTAGTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-TRAF

Protein Analysis

201

Amino Acids

22.43

Weight (kDa)

7.1

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09920
fragaria_vesca FvH4_5g34100 FvH4_5g34100
malus_domestica MD08G1206200.v1.1 MD15G1389500.v1.1
prunus_persica Prupe.1G538600_v2.0.a1 Prupe.1G538600_v2.0.a1
pyrus_communis pycom08g17820 pycom15g34910
rosa_chinensis RchiOBHm_Chr7g0233601
rosa_laevigata RLG00000001250
rosa_multiflora Rmu_sc0003712.1_g000011
rosa_roxburghii Rroxscaffold_3G00227120
rosa_rugosa Rorug07G0281400
rosa_samantha Rh7AG438000 Rh7BG410700 Rh7CG457600 Rh7DG426900
rosa_wichuraiana Rw7G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 562
AcuI CTGAAG 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 178
AflIII ACRYGT 1 cut(s) 266
AjnI CCWGG 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 4 cut(s) 53, 227, 308, 402
AluI AGCT 4 cut(s) 53, 227, 308, 402
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 562
ApeKI GCWGC 2 cut(s) 402, 452
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 3 cut(s) 137, 251, 511
AvaII GGWCC 1 cut(s) 470
BbsI GAAGAC 2 cut(s) 487, 588
BbvI GCAGC 2 cut(s) 389, 439
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 1 cut(s) 439
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 3 cut(s) 104, 305, 447
BisI GCNGC 2 cut(s) 403, 453
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 2 cut(s) 404, 454
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 135, 472
BmrFI CCNGG 1 cut(s) 439
BmsI GCATC 3 cut(s) 20, 322, 433
BpiI GAAGAC 2 cut(s) 487, 588
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 412
Bse3DI GCAATG 4 cut(s) 88, 287, 522, 537
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 4 cut(s) 88, 287, 522, 537
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 412
BseXI GCAGC 2 cut(s) 389, 439
BsgI GTGCAG 1 cut(s) 388
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 3 cut(s) 41, 398, 456
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 3 cut(s) 41, 398, 456
BsmI GAATGC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 301, 554
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 135, 472
BspPI GGATC 1 cut(s) 562
BsrDI GCAATG 4 cut(s) 88, 287, 522, 537
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 301, 554
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 44, 427
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 150, 309
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 2 cut(s) 304, 557
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 301, 554
BstMWI GCNNNNNNNGC 2 cut(s) 182, 452
BstNI CCWGG 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 437
BstV1I GCAGC 2 cut(s) 389, 439
BstV2I GAAGAC 2 cut(s) 487, 588
BtsCI GGATG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 40, 405
Cac8I GCNNGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 470
CviAII CATG 3 cut(s) 173, 267, 392
CviJI RGCY 9 cut(s) 5, 53, 185, 227, 308, 402, 452, 487, 511
CviKI_1 RGCY 9 cut(s) 5, 53, 185, 227, 308, 402, 452, 487, 511
DdeI CTNAG 2 cut(s) 150, 309
DpnI GATC 2 cut(s) 303, 556
DpnII GATC 2 cut(s) 301, 554
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 437
FaeI CATG 3 cut(s) 176, 270, 395
FaiI YATR 9 cut(s) 29, 34, 131, 147, 174, 268, 325, 393, 515
FaqI GGGAC 3 cut(s) 41, 398, 456
FatI CATG 3 cut(s) 172, 266, 391
Fnu4HI GCNGC 2 cut(s) 403, 453
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 2 cut(s) 403, 453
FspBI CTAG 3 cut(s) 104, 305, 447
GluI GCNGC 2 cut(s) 403, 453
HapII CCGG 1 cut(s) 179
Hin1II CATG 3 cut(s) 176, 270, 395
HinfI GANTC 1 cut(s) 331
HpaII CCGG 1 cut(s) 179
HphI GGTGA 3 cut(s) 137, 251, 511
Hpy166II GTNNAC 2 cut(s) 191, 232
Hpy188I TCNGA 4 cut(s) 16, 138, 166, 336
Hpy188III TCNNGA 3 cut(s) 104, 317, 568
Hpy8I GTNNAC 2 cut(s) 191, 232
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 44, 427
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 7 cut(s) 11, 36, 79, 296, 405, 527, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 452
HpyF3I CTNAG 2 cut(s) 150, 309
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 176, 270, 395
Kzo9I GATC 2 cut(s) 301, 554
LmnI GCTCC 2 cut(s) 20, 181
LpnPI CCDG 9 cut(s) 192, 199, 302, 306, 393, 424, 429, 451, 519
Lsp1109I GCAGC 2 cut(s) 389, 439
LweI GCATC 3 cut(s) 20, 322, 433
MaeI CTAG 3 cut(s) 104, 305, 447
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 3 cut(s) 44, 262, 356
MalI GATC 2 cut(s) 303, 556
MboI GATC 2 cut(s) 301, 554
MboII GAAGA 3 cut(s) 426, 492, 593
MfeI CAATTG 1 cut(s) 297
MluCI AATT 4 cut(s) 244, 258, 297, 396
MnlI CCTC 3 cut(s) 70, 261, 455
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 2 cut(s) 182, 452
NdeII GATC 2 cut(s) 301, 554
NlaIII CATG 3 cut(s) 176, 270, 395
NlaIV GGNNCC 2 cut(s) 135, 472
NmuCI GTSAC 2 cut(s) 44, 262
NspI RCATGY 1 cut(s) 270
OliI CACNNNNGTG 1 cut(s) 237
PciI ACATGT 1 cut(s) 266
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 2 cut(s) 404, 454
PpuMI RGGWCCY 1 cut(s) 470
PscI ACATGT 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 135, 472
PspPI GGNCC 1 cut(s) 470
PspPPI RGGWCCY 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 2 cut(s) 403, 453
Sau3AI GATC 2 cut(s) 301, 554
Sau96I GGNCC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 439
SetI ASST 7 cut(s) 55, 217, 229, 241, 310, 404, 472
SfaNI GCATC 3 cut(s) 20, 322, 433
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 4 cut(s) 244, 258, 297, 396
SsiI CCGC 1 cut(s) 97
SspI AATATT 2 cut(s) 70, 222
SspMI CTAG 3 cut(s) 104, 305, 447
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 2 cut(s) 44, 427
TaiI ACGT 1 cut(s) 217
TasI AATT 4 cut(s) 244, 258, 297, 396
TfiI GAWTC 1 cut(s) 331
TscAI CASTG 2 cut(s) 47, 412
TseFI GTSAC 2 cut(s) 44, 262
TseI GCWGC 2 cut(s) 402, 452
Tsp45I GTSAC 2 cut(s) 44, 262
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 2 cut(s) 353, 517
TspRI CASTG 2 cut(s) 47, 412
VpaK11BI GGWCC 1 cut(s) 470
XbaI TCTAGA 1 cut(s) 103
XceI RCATGY 1 cut(s) 270
XspI CTAG 3 cut(s) 104, 305, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.