Rroxscaffold_3G00227120

XIAP-associated factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012125
Physical Location & Seq
Reverse (-)
11141305 .. 11145501
4197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227120.1

Sequence Viewer

Length: 603 bp
ATGGCTGTTTTATCTGATGAAGCCAAGAGGATATGCAATCACTGTGAAAGAGCTATCCCGTCTTTAAATATTGATTTGCATTATGCGCACTGTGTCCGCAATCTGGAAAGATGTAAAGTTTGTGGTGACATGGTTCCGAAAAAACATGCTGAGGAACATTACTTAAACAACCATGCTCCTGTATCTTGTACACTTTGTAGTGAGACAATGGAACGTGATATATTGGCAATCCACAAAGGTGAAAATTGTCCTCGAAGAATTGTCACATGCGAGTTCTGTGAGTTCCCATTGCCTGCTGTTGATCTAGCTGAGCATCAGGAAGTATGTGGCAATCGGACAGAACTTTGTCTTCATTGTAGAAGATACGTTAGACTTCGAGAAAGATATAACCATGAGATTAGTTGCAATAGTGTCTCAGAAAATACCGTGGGACCTTCCAGGGATGCCAGGGAAGCTGAAAGAGGGCAAGGTCCCCAAAGAAGAAGACAGCCTAATGAGTTTTCACGGAGAGGGCTTGTGTTCACCATTGCATTAACAGGCATTGCCGTTCTATTGGGATCTCTTTTTTTCCAGAAGAAGACAGAGGGCAGCCAAGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.82

Weight (kDa)

7.94

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09920
fragaria_vesca FvH4_5g34100 FvH4_5g34100
malus_domestica MD08G1206200.v1.1 MD15G1389500.v1.1
prunus_persica Prupe.1G538600_v2.0.a1 Prupe.1G538600_v2.0.a1
pyrus_communis pycom08g17820 pycom15g34910
rosa_chinensis RchiOBHm_Chr7g0233601
rosa_laevigata RLG00000001250
rosa_multiflora Rmu_sc0003712.1_g000011
rosa_roxburghii Rroxscaffold_3G00227120
rosa_rugosa Rorug07G0281400
rosa_samantha Rh7AG438000 Rh7BG410700 Rh7CG457600 Rh7DG426900
rosa_wichuraiana Rw7G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 565
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 103
AjnI CCWGG 2 cut(s) 437, 446
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 3 cut(s) 53, 308, 455
AluI AGCT 3 cut(s) 53, 308, 455
Alw26I GTCTC 2 cut(s) 197, 418
AlwI GGATC 1 cut(s) 565
ApeKI GCWGC 1 cut(s) 588
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 431, 470
AsuHPI GGTGA 3 cut(s) 137, 251, 514
AvaII GGWCC 2 cut(s) 431, 470
BbsI GAAGAC 3 cut(s) 341, 490, 584
BbvCI CCTCAGC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 2 cut(s) 439, 448
BcoDI GTCTC 2 cut(s) 197, 418
BfaI CTAG 1 cut(s) 305
BisI GCNGC 1 cut(s) 589
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 590
Bme1390I CCNGG 2 cut(s) 439, 448
Bme18I GGWCC 2 cut(s) 431, 470
BmgT120I GGNCC 2 cut(s) 431, 470
BmiI GGNNCC 3 cut(s) 135, 432, 472
BmrFI CCNGG 2 cut(s) 439, 448
BmsI GCATC 2 cut(s) 322, 433
BpiI GAAGAC 3 cut(s) 341, 490, 584
Bpu10I CCTNAGC 1 cut(s) 150
Bpu1102I GCTNAGC 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 426, 438, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse3DI GCAATG 3 cut(s) 287, 525, 540
BseBI CCWGG 2 cut(s) 439, 448
BseDI CCNNGG 3 cut(s) 426, 438, 447
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 3 cut(s) 287, 525, 540
BseMII CTCAG 3 cut(s) 141, 300, 429
BslFI GGGAC 2 cut(s) 444, 456
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 2 cut(s) 197, 418
BsmFI GGGAC 2 cut(s) 444, 456
Bsp1407I TGTACA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 301, 557
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 3 cut(s) 142, 301, 428
BspLI GGNNCC 3 cut(s) 135, 432, 472
BspPI GGATC 1 cut(s) 565
BsrDI GCAATG 3 cut(s) 287, 525, 540
BsrGI TGTACA 1 cut(s) 188
BssECI CCNNGG 3 cut(s) 426, 438, 447
BssMI GATC 2 cut(s) 301, 557
Bst2UI CCWGG 2 cut(s) 439, 448
Bst4CI ACNGT 3 cut(s) 44, 92, 427
BstAUI TGTACA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 150, 309, 415
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 304, 560
BstMAI GTCTC 2 cut(s) 197, 418
BstMBI GATC 2 cut(s) 301, 557
BstMWI GCNNNNNNNGC 2 cut(s) 85, 452
BstNI CCWGG 2 cut(s) 439, 448
BstNSI RCATGY 2 cut(s) 149, 270
BstSCI CCNGG 2 cut(s) 437, 446
BstV2I GAAGAC 3 cut(s) 341, 490, 584
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 40, 88
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 431, 470
Csp6I GTAC 1 cut(s) 189
CviAII CATG 5 cut(s) 130, 146, 173, 267, 392
CviJI RGCY 8 cut(s) 5, 23, 53, 308, 455, 490, 514, 591
CviKI_1 RGCY 8 cut(s) 5, 23, 53, 308, 455, 490, 514, 591
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 3 cut(s) 150, 309, 415
DpnI GATC 2 cut(s) 303, 559
DpnII GATC 2 cut(s) 301, 557
DraI TTTAAA 1 cut(s) 66
Eco47I GGWCC 2 cut(s) 431, 470
EcoO109I RGGNCCY 2 cut(s) 431, 470
EcoRII CCWGG 2 cut(s) 437, 446
FaeI CATG 5 cut(s) 133, 149, 176, 270, 395
FaqI GGGAC 2 cut(s) 444, 456
FatI CATG 5 cut(s) 129, 145, 172, 266, 391
Fnu4HI GCNGC 1 cut(s) 589
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 1 cut(s) 589
FspAI RTGCGCAY 1 cut(s) 87
FspBI CTAG 1 cut(s) 305
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 589
HhaI GCGC 1 cut(s) 88
Hin1II CATG 5 cut(s) 133, 149, 176, 270, 395
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HphI GGTGA 3 cut(s) 137, 251, 514
Hpy166II GTNNAC 2 cut(s) 191, 522
Hpy188I TCNGA 4 cut(s) 16, 138, 336, 418
Hpy188III TCNNGA 4 cut(s) 104, 317, 377, 571
Hpy8I GTNNAC 2 cut(s) 191, 522
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 3 cut(s) 44, 92, 427
HpyCH4IV ACGT 2 cut(s) 214, 366
HpyCH4V TGCA 4 cut(s) 36, 79, 405, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 452
HpyF3I CTNAG 3 cut(s) 150, 309, 415
HpySE526I ACGT 2 cut(s) 214, 366
Hsp92II CATG 5 cut(s) 133, 149, 176, 270, 395
HspAI GCGC 1 cut(s) 86
Kzo9I GATC 2 cut(s) 301, 557
LmnI GCTCC 1 cut(s) 181
LweI GCATC 2 cut(s) 322, 433
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 214, 366
MaeIII GTNAC 2 cut(s) 125, 262
MalI GATC 2 cut(s) 303, 559
MboI GATC 2 cut(s) 301, 557
MboII GAAGA 7 cut(s) 267, 341, 372, 492, 495, 586, 589
MflI RGATCY 1 cut(s) 557
MluCI AATT 3 cut(s) 244, 258, 598
MnlI CCTC 6 cut(s) 21, 145, 261, 455, 503, 577
MseI TTAA 3 cut(s) 65, 164, 533
MslI CAYNNNNRTG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 439, 448
MvaI CCWGG 2 cut(s) 439, 448
MwoI GCNNNNNNNGC 2 cut(s) 85, 452
NdeII GATC 2 cut(s) 301, 557
NlaIII CATG 5 cut(s) 133, 149, 176, 270, 395
NlaIV GGNNCC 3 cut(s) 135, 432, 472
NmuCI GTSAC 2 cut(s) 125, 262
NsbI TGCGCA 1 cut(s) 87
NspI RCATGY 2 cut(s) 149, 270
OliI CACNNNNGTG 1 cut(s) 237
PkrI GCNGC 1 cut(s) 590
PpuMI RGGWCCY 2 cut(s) 431, 470
Psp5II RGGWCCY 2 cut(s) 431, 470
Psp6I CCWGG 2 cut(s) 437, 446
PspGI CCWGG 2 cut(s) 437, 446
PspN4I GGNNCC 3 cut(s) 135, 432, 472
PspPI GGNCC 2 cut(s) 431, 470
PspPPI RGGWCCY 2 cut(s) 431, 470
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 3 cut(s) 65, 164, 533
SatI GCNGC 1 cut(s) 589
Sau3AI GATC 2 cut(s) 301, 557
Sau96I GGNCC 2 cut(s) 431, 470
ScrFI CCNGG 2 cut(s) 439, 448
SetI ASST 8 cut(s) 55, 217, 241, 310, 369, 436, 457, 472
SfaNI GCATC 2 cut(s) 322, 433
SinI GGWCC 2 cut(s) 431, 470
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 3 cut(s) 244, 258, 598
SsiI CCGC 1 cut(s) 97
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 437, 446
TaaI ACNGT 3 cut(s) 44, 92, 427
TaiI ACGT 2 cut(s) 217, 369
TaqI TCGA 2 cut(s) 253, 376
TasI AATT 3 cut(s) 244, 258, 598
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 3 cut(s) 65, 164, 533
Tru9I TTAA 3 cut(s) 65, 164, 533
TscAI CASTG 2 cut(s) 47, 95
TseFI GTSAC 2 cut(s) 125, 262
TseI GCWGC 1 cut(s) 588
Tsp45I GTSAC 2 cut(s) 125, 262
TspDTI ATGAA 2 cut(s) 33, 341
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 2 cut(s) 47, 95
VpaK11BI GGWCC 2 cut(s) 431, 470
XceI RCATGY 2 cut(s) 149, 270
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.