FvH4_5g34100

XIAP-associated factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012125
Physical Location & Seq
Forward (+)
24777495 .. 24781440
3946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34100.t1

Sequence Viewer

Length: 603 bp
ATGGCTCTTGCATCTGACGACGCTTGCAGGATATGCACCCACTGTGAGAGAGCTATCCCGTCTTTGAATATTGATCTGCATTACGCTCATTGTGTCCGCAATCTGGAGAAATGTAAAGTTTGTAGTGACATGATTCCAAAGAAACATGCTGAGGAACATTACTTAGACAACCATGCCCCGGTATCTTGTTCACTTTGTAGTGAGACAATGGATCGTGATATATTGACCATCCACAAAGGTGAAAATTGCCCTCAAAGAATTGTCAATTGCGAGTTCTGTGAGTTCCCATTGCCTGCTGTAGATCTACCTGAGCATCAGGAAGTATGTGGCAATCGGACAGAATTTTGTTCTTCTTGTAGAAGATACGTTCGACTTCGTGAAAGATATAACCATGACGCTAGTTGCAATGTTGTACAAGACGATACCGTGGGACCTTCCAGGGATGTCAGGGCAGCTGAAATAGGGCAAGGTCCCCAAAGAAGAAGACAGCCTAATGAGTTTTCACGGAGAGGGCTTGTGTTTACCATTGCATTAACAGGCATTGCTGTTCTATTGGGATCTCTTTTTTTCCAGAAGAAGGCAGAGGGCAGTCAAGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.6

Weight (kDa)

6.49

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAFD1-XIAF1_ZnF PF21366 102 - 135 5.2e-06 TRAFD1/XAF1, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09920
fragaria_vesca FvH4_5g34100 FvH4_5g34100
malus_domestica MD08G1206200.v1.1 MD15G1389500.v1.1
prunus_persica Prupe.1G538600_v2.0.a1 Prupe.1G538600_v2.0.a1
pyrus_communis pycom08g17820 pycom15g34910
rosa_chinensis RchiOBHm_Chr7g0233601
rosa_laevigata RLG00000001250
rosa_multiflora Rmu_sc0003712.1_g000011
rosa_roxburghii Rroxscaffold_3G00227120
rosa_rugosa Rorug07G0281400
rosa_samantha Rh7AG438000 Rh7BG410700 Rh7CG457600 Rh7DG426900
rosa_wichuraiana Rw7G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AclWI GGATC 2 cut(s) 219, 565
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 3 cut(s) 103, 178, 577
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 437
AleI CACNNNNGTG 1 cut(s) 237
AluBI AGCT 2 cut(s) 53, 455
AluI AGCT 2 cut(s) 53, 455
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 219, 565
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 341
AspS9I GGNCC 2 cut(s) 431, 470
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 2 cut(s) 431, 470
BbsI GAAGAC 1 cut(s) 490
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 464
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 439
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 297
BglII AGATCT 1 cut(s) 301
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 2 cut(s) 179, 439
Bme18I GGWCC 2 cut(s) 431, 470
BmgT120I GGNCC 2 cut(s) 431, 470
BmiI GGNNCC 2 cut(s) 432, 472
BmrFI CCNGG 2 cut(s) 179, 439
BmsI GCATC 2 cut(s) 20, 322
BpiI GAAGAC 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 125
Bpu10I CCTNAGC 2 cut(s) 150, 309
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 3 cut(s) 177, 426, 438
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 178, 577
Bse3DI GCAATG 4 cut(s) 287, 412, 525, 540
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 3 cut(s) 177, 426, 438
BseGI GGATG 2 cut(s) 228, 448
BseLI CCNNNNNNNGG 3 cut(s) 103, 178, 577
BseMI GCAATG 4 cut(s) 287, 412, 525, 540
BseMII CTCAG 2 cut(s) 141, 300
BseXI GCAGC 1 cut(s) 464
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 444, 456
BslI CCNNNNNNNGG 3 cut(s) 103, 178, 577
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 444, 456
Bsp1407I TGTACA 1 cut(s) 412
Bsp143I GATC 4 cut(s) 73, 211, 301, 557
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 142, 301
BspLI GGNNCC 2 cut(s) 432, 472
BspPI GGATC 2 cut(s) 219, 565
BsrDI GCAATG 4 cut(s) 287, 412, 525, 540
BsrGI TGTACA 1 cut(s) 412
BssECI CCNNGG 3 cut(s) 177, 426, 438
BssMI GATC 4 cut(s) 73, 211, 301, 557
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 2 cut(s) 44, 427
BstAPI GCANNNNNTGC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 412
BstC8I GCNNGC 2 cut(s) 25, 294
BstDEI CTNAG 3 cut(s) 150, 163, 309
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 2 cut(s) 228, 448
BstKTI GATC 4 cut(s) 76, 214, 304, 560
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 73, 211, 301, 557
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 1 cut(s) 439
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 2 cut(s) 177, 437
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 2 cut(s) 301, 557
BstYI RGATCY 2 cut(s) 301, 557
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 228, 448
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 2 cut(s) 25, 294
Cfr13I GGNCC 2 cut(s) 431, 470
CseI GACGC 2 cut(s) 29, 404
Csp6I GTAC 1 cut(s) 413
CviAII CATG 4 cut(s) 130, 146, 173, 392
CviJI RGCY 5 cut(s) 5, 53, 455, 490, 514
CviKI_1 RGCY 5 cut(s) 5, 53, 455, 490, 514
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 3 cut(s) 150, 163, 309
DpnI GATC 4 cut(s) 75, 213, 303, 559
DpnII GATC 4 cut(s) 73, 211, 301, 557
Eco47I GGWCC 2 cut(s) 431, 470
EcoO109I RGGNCCY 2 cut(s) 431, 470
EcoRII CCWGG 1 cut(s) 437
FaeI CATG 4 cut(s) 133, 149, 176, 395
FaiI YATR 8 cut(s) 34, 131, 147, 174, 221, 325, 387, 393
FaqI GGGAC 2 cut(s) 444, 456
FatI CATG 4 cut(s) 129, 145, 172, 391
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 2 cut(s) 215, 455
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 399
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 125
HapII CCGG 1 cut(s) 179
HgaI GACGC 2 cut(s) 29, 404
Hin1II CATG 4 cut(s) 133, 149, 176, 395
HinfI GANTC 1 cut(s) 133
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 191, 522
Hpy188I TCNGA 2 cut(s) 16, 336
Hpy188III TCNNGA 5 cut(s) 104, 215, 317, 377, 571
Hpy8I GTNNAC 2 cut(s) 191, 522
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 444, 571
HpyCH4III ACNGT 2 cut(s) 44, 427
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 6 cut(s) 11, 27, 36, 79, 405, 530
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 3 cut(s) 150, 163, 309
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 4 cut(s) 133, 149, 176, 395
Kzo9I GATC 4 cut(s) 73, 211, 301, 557
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 2 cut(s) 20, 322
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 125
MalI GATC 4 cut(s) 75, 213, 303, 559
MboI GATC 4 cut(s) 73, 211, 301, 557
MboII GAAGA 5 cut(s) 342, 372, 492, 495, 586
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 2 cut(s) 301, 557
MluCI AATT 5 cut(s) 244, 258, 265, 341, 598
MnlI CCTC 4 cut(s) 145, 261, 503, 577
MseI TTAA 1 cut(s) 533
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 179, 439
MunI CAATTG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 33
NciI CCSGG 1 cut(s) 179
NdeII GATC 4 cut(s) 73, 211, 301, 557
NlaIII CATG 4 cut(s) 133, 149, 176, 395
NlaIV GGNNCC 2 cut(s) 432, 472
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 1 cut(s) 149
OliI CACNNNNGTG 1 cut(s) 237
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 454
PpuMI RGGWCCY 2 cut(s) 431, 470
Psp5II RGGWCCY 2 cut(s) 431, 470
Psp6I CCWGG 1 cut(s) 437
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 432, 472
PspPI GGNCC 2 cut(s) 431, 470
PspPPI RGGWCCY 2 cut(s) 431, 470
PsuI RGATCY 2 cut(s) 301, 557
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 533
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 4 cut(s) 73, 211, 301, 557
Sau96I GGNCC 2 cut(s) 431, 470
ScrFI CCNGG 2 cut(s) 179, 439
SetI ASST 7 cut(s) 55, 241, 310, 369, 436, 457, 472
SfaNI GCATC 2 cut(s) 20, 322
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 431, 470
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 5 cut(s) 244, 258, 265, 341, 598
SsiI CCGC 1 cut(s) 97
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 177, 437
TaaI ACNGT 2 cut(s) 44, 427
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 370
TasI AATT 5 cut(s) 244, 258, 265, 341, 598
TatI WGTACW 1 cut(s) 412
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 1 cut(s) 533
Tru9I TTAA 1 cut(s) 533
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 520
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 2 cut(s) 431, 470
XapI RAATTY 1 cut(s) 341
XceI RCATGY 1 cut(s) 149
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.