RLG00000001250

XIAP-associated factor 1-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
12822988 .. 12825907
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001250

Sequence Viewer

Length: 351 bp
ATGCTCCGGTATCTTGTTCACTTTGTAGTGAGACAATGGAACGTGATATATTGGCAATCCACAAAGGAAGTATGTGGCAATCGGACAGAACTTTGTCTTCATTGTAGAAGATACGTTAGACTTCGAGAAAGATATAACCATGAGATTAGTTGCAATAGTGTCTCAGAAAATACCGTGGGACCTTCCAGGGATGCCAGGGAAGCTGAAAGAGGGCAAGGTCCCCAAAGAAGAAGACAGCCAAATGAGTTTTCACGGAGAGGGCTTGTGTTCACCATTGCATTAACAGGCATTGCCGTTCTATTGGGATCTCTTTTTTTCCAGAAGAAGACAGAGGGCAGTCAAGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.6

Weight (kDa)

10.14

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012125)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 313
AjnI CCWGG 2 cut(s) 185, 194
AjuI GAANNNNNNNTTGG 2 cut(s) 232, 264
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 25, 166
AlwI GGATC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 179, 218
AsuHPI GGTGA 1 cut(s) 262
AvaII GGWCC 2 cut(s) 179, 218
BbsI GAAGAC 3 cut(s) 89, 238, 332
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 2 cut(s) 187, 196
BcoDI GTCTC 2 cut(s) 25, 166
Bme1390I CCNGG 2 cut(s) 187, 196
Bme18I GGWCC 2 cut(s) 179, 218
BmgT120I GGNCC 2 cut(s) 179, 218
BmiI GGNNCC 2 cut(s) 180, 220
BmrFI CCNGG 2 cut(s) 187, 196
BmsI GCATC 1 cut(s) 181
BpiI GAAGAC 3 cut(s) 89, 238, 332
BsaJI CCNNGG 3 cut(s) 174, 186, 195
BsaWI WCCGGW 1 cut(s) 6
Bse3DI GCAATG 2 cut(s) 273, 288
BseBI CCWGG 2 cut(s) 187, 196
BseDI CCNNGG 3 cut(s) 174, 186, 195
BseGI GGATG 1 cut(s) 196
BseMI GCAATG 2 cut(s) 273, 288
BseMII CTCAG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 2 cut(s) 192, 204
BsmAI GTCTC 2 cut(s) 25, 166
BsmFI GGGAC 2 cut(s) 192, 204
Bsp143I GATC 1 cut(s) 305
BspCNI CTCAG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 180, 220
BspPI GGATC 1 cut(s) 313
BsrDI GCAATG 2 cut(s) 273, 288
BssECI CCNNGG 3 cut(s) 174, 186, 195
BssMI GATC 1 cut(s) 305
Bst2UI CCWGG 2 cut(s) 187, 196
Bst4CI ACNGT 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 163
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 1 cut(s) 308
BstMAI GTCTC 2 cut(s) 25, 166
BstMBI GATC 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 2 cut(s) 187, 196
BstSCI CCNGG 2 cut(s) 185, 194
BstV2I GAAGAC 3 cut(s) 89, 238, 332
BstX2I RGATCY 1 cut(s) 305
BstYI RGATCY 1 cut(s) 305
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 179, 218
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 203, 238, 262
CviKI_1 RGCY 3 cut(s) 203, 238, 262
DdeI CTNAG 1 cut(s) 163
DpnI GATC 1 cut(s) 307
DpnII GATC 1 cut(s) 305
Eco47I GGWCC 2 cut(s) 179, 218
EcoO109I RGGNCCY 2 cut(s) 179, 218
EcoRII CCWGG 2 cut(s) 185, 194
FaeI CATG 1 cut(s) 143
FaiI YATR 4 cut(s) 49, 73, 135, 141
FaqI GGGAC 2 cut(s) 192, 204
FatI CATG 1 cut(s) 139
FokI GGATG 1 cut(s) 203
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 143
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 2 cut(s) 19, 270
Hpy188I TCNGA 2 cut(s) 84, 166
Hpy188III TCNNGA 2 cut(s) 125, 319
Hpy8I GTNNAC 2 cut(s) 19, 270
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 42, 114
HpyCH4V TGCA 2 cut(s) 153, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 2 cut(s) 42, 114
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 7 cut(s) 20, 172, 181, 199, 208, 270, 332
LweI GCATC 1 cut(s) 181
MaeII ACGT 2 cut(s) 42, 114
MalI GATC 1 cut(s) 307
MboI GATC 1 cut(s) 305
MboII GAAGA 6 cut(s) 89, 120, 240, 243, 334, 337
MflI RGATCY 1 cut(s) 305
MluCI AATT 1 cut(s) 346
MnlI CCTC 3 cut(s) 203, 251, 325
MseI TTAA 1 cut(s) 281
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 2 cut(s) 187, 196
MvaI CCWGG 2 cut(s) 187, 196
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 305
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 180, 220
PpuMI RGGWCCY 2 cut(s) 179, 218
Psp5II RGGWCCY 2 cut(s) 179, 218
Psp6I CCWGG 2 cut(s) 185, 194
PspGI CCWGG 2 cut(s) 185, 194
PspN4I GGNNCC 2 cut(s) 180, 220
PspPI GGNCC 2 cut(s) 179, 218
PspPPI RGGWCCY 2 cut(s) 179, 218
PsuI RGATCY 1 cut(s) 305
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 1 cut(s) 305
Sau96I GGNCC 2 cut(s) 179, 218
ScrFI CCNGG 2 cut(s) 187, 196
SetI ASST 5 cut(s) 45, 117, 184, 205, 220
SfaNI GCATC 1 cut(s) 181
SinI GGWCC 2 cut(s) 179, 218
Sse9I AATT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 185, 194
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 45, 117
TaqI TCGA 1 cut(s) 124
TasI AATT 1 cut(s) 346
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 268
VpaK11BI GGWCC 2 cut(s) 179, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.