pycom08g17820

XIAP-associated factor 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012125
Physical Location & Seq
Reverse (-)
17947584 .. 17951072
3489 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g17820.2

Sequence Viewer

Length: 471 bp
ATGGTTCCAAAAAAATATGCCGAGGAACATTACTCGAACACCCATGCTCCGGTAGCCTGTTCACTTTGTAGTGAGACAATGGAACGTGAAATATTAGCCATCCACAAAGGTGAAAACTGCCCTCAAAGAATTGTCACGTGCGAGTTCTGTGAGTTCCCATTGCCTGCAATTGATCTTGCTGAGCATCAGGAAGTATGCGGGAATCGAACAGAACTTTGTCATCTTTGTAACAGATACATCAGACTGCGAGAACGCTATAACCATGAAATTAGGTGTAATGGTGTCTCGGATAATACTGCTGGTCCTTCCAGGGATGCTAGGCCAGCTGAAAGAAGACAAGGTCCTCCAAGAAGACAGGCAAACGAGGTTTCACAGAAGCGGCTTATATTCACCATTGCACTAACAGGCATTGCTGTTCTATTAGGGTCTCTTTTTTTCCAGAGAAAGCCAGACGAGAGTCGTGTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.86

Weight (kDa)

8.1

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09920
fragaria_vesca FvH4_5g34100 FvH4_5g34100
malus_domestica MD08G1206200.v1.1 MD15G1389500.v1.1
prunus_persica Prupe.1G538600_v2.0.a1 Prupe.1G538600_v2.0.a1
pyrus_communis pycom08g17820 pycom15g34910
rosa_chinensis RchiOBHm_Chr7g0233601
rosa_laevigata RLG00000001250
rosa_multiflora Rmu_sc0003712.1_g000011
rosa_roxburghii Rroxscaffold_3G00227120
rosa_rugosa Rorug07G0281400
rosa_samantha Rh7AG438000 Rh7BG410700 Rh7CG457600 Rh7DG426900
rosa_wichuraiana Rw7G036120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 379
AcvI CACGTG 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 49
AjnI CCWGG 1 cut(s) 308
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 3 cut(s) 68, 289, 432
AoxI GGCC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 302, 341
AsuHPI GGTGA 2 cut(s) 122, 382
AvaII GGWCC 2 cut(s) 302, 341
BbrPI CACGTG 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 340, 358
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 310
BcoDI GTCTC 3 cut(s) 68, 289, 432
BfaI CTAG 1 cut(s) 318
BisI GCNGC 1 cut(s) 380
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 310
Bme18I GGWCC 2 cut(s) 302, 341
BmgT120I GGNCC 2 cut(s) 302, 341
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 193, 304
BoxI GACNNNNGTC 1 cut(s) 456
BpiI GAAGAC 2 cut(s) 340, 358
Bpu1102I GCTNAGC 1 cut(s) 180
BsaAI YACGTR 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 21, 309
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse3DI GCAATG 3 cut(s) 158, 393, 408
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 21, 309
BseGI GGATG 2 cut(s) 99, 319
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 3 cut(s) 158, 393, 408
BseMII CTCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 322
BsiSI CCGG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 3 cut(s) 68, 289, 432
BsnI GGCC 1 cut(s) 322
Bso31I GGTCTC 1 cut(s) 432
Bsp143I GATC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 180
BspACI CCGC 2 cut(s) 198, 379
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 432
BsrDI GCAATG 3 cut(s) 158, 393, 408
BssECI CCNNGG 2 cut(s) 21, 309
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 165, 324
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 99, 319
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 3 cut(s) 68, 289, 432
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 53, 323
BstNI CCWGG 1 cut(s) 310
BstPAI GACNNNNGTC 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 308
BstV2I GAAGAC 2 cut(s) 340, 358
BsuRI GGCC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 99, 319
Cac8I GCNNGC 2 cut(s) 165, 324
Cfr13I GGNCC 2 cut(s) 302, 341
CviAII CATG 2 cut(s) 44, 263
CviJI RGCY 6 cut(s) 56, 98, 322, 326, 382, 448
CviKI_1 RGCY 6 cut(s) 56, 98, 322, 326, 382, 448
DdeI CTNAG 1 cut(s) 180
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 2 cut(s) 302, 341
Eco72I CACGTG 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 2 cut(s) 47, 266
FaiI YATR 6 cut(s) 18, 45, 196, 258, 264, 386
FatI CATG 2 cut(s) 43, 262
FauI CCCGC 1 cut(s) 191
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 2 cut(s) 86, 326
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 322
HapII CCGG 1 cut(s) 50
Hin1II CATG 2 cut(s) 47, 266
HinfI GANTC 2 cut(s) 202, 457
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 122, 382
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 242, 289
Hpy188III TCNNGA 2 cut(s) 188, 439
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 315
HpyCH4IV ACGT 2 cut(s) 85, 137
HpyCH4V TGCA 3 cut(s) 167, 398, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 323
HpyF3I CTNAG 1 cut(s) 180
HpySE526I ACGT 2 cut(s) 85, 137
Hsp92II CATG 2 cut(s) 47, 266
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 52
LweI GCATC 2 cut(s) 193, 304
MaeI CTAG 1 cut(s) 318
MaeII ACGT 2 cut(s) 85, 137
MaeIII GTNAC 2 cut(s) 133, 227
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 2 cut(s) 345, 363
MfeI CAATTG 1 cut(s) 168
MluCI AATT 3 cut(s) 129, 168, 267
MlyI GAGTC 1 cut(s) 466
MnlI CCTC 4 cut(s) 16, 132, 354, 358
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 310
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 310
MwoI GCNNNNNNNGC 2 cut(s) 53, 323
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 47, 266
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 46
NmuCI GTSAC 1 cut(s) 133
OliI CACNNNNGTG 1 cut(s) 108
PfeI GAWTC 1 cut(s) 202
PflFI GACNNNGTC 1 cut(s) 339
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 465
PmaCI CACGTG 1 cut(s) 138
PmlI CACGTG 1 cut(s) 138
PpsI GAGTC 1 cut(s) 465
Ppu21I YACGTR 1 cut(s) 138
PpuMI RGGWCCY 1 cut(s) 341
PshAI GACNNNNGTC 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 308
PspCI CACGTG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 302, 341
PspPPI RGGWCCY 1 cut(s) 341
PsyI GACNNNGTC 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 108
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 302, 341
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 1 cut(s) 310
SetI ASST 7 cut(s) 88, 112, 140, 275, 328, 343, 369
SfaNI GCATC 2 cut(s) 193, 304
SinI GGWCC 2 cut(s) 302, 341
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 3 cut(s) 129, 168, 267
SsiI CCGC 2 cut(s) 198, 379
SspI AATATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 308
TaiI ACGT 2 cut(s) 88, 140
TaqI TCGA 2 cut(s) 35, 205
TasI AATT 3 cut(s) 129, 168, 267
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 1 cut(s) 202
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 302, 341
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.