AT1G10600

JAB/MPN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002227
Physical Location & Seq
Forward (+)
3503640 .. 3506159
2520 bp
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UTR
Exon/CDS
Intron
AT1G10600.1

Sequence Viewer

Length: 672 bp
ATGGTAACGCTCTCGTCTCCATCTCCCTCGCTCTCTTGCGTAGAGAACGTGACATGTAAATCTTCTCACGTTTCTCGGGTTCTAATCTCCGGTACCGATAATATTAATCACGGTGAATCGTCGGAAGCCAAAATACTGAGAGATGTTCATATCTCAGAAAGGTTATTGGAGGATTTCACTGAGCTTGCAAGAGAGAACACTGAGAAGGACCTCGAGACTTGTGGGACTCTCGCTGCCTTTCTTGAAAGAGGAATTTTTTATGTAACCACTCTGATAATACCTAAGCAAGAATCAACTTCTAATTCTTGTCAGGCTATGAATGAAGTGGAAGTGTTTTCCATTCAAAACGAAAGAGAACTCTATCCCGTAGGATGGATTCATACTCATCCTTCTCAGGGTTGTTTCATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGGTAATGGTGCCAGAGGCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCTAAGAGTTACGGGATATTTAAGCTAACGGACCCTGGAGGAATGGAGGTACTGAGAGGCTGCTCAGAGACTGGATTCCACCCGCACAAAGAACCAGAAGATGGGAACCCAGTTTATGAGCATTGCTCAAACGTCTACAAGAACTCGAACCTTAGGTTCGAGATTTTTGATCTACGTTAA

Protein Analysis

223

Amino Acids

24.94

Weight (kDa)

5.07

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JAB PF01398 47 - 153 4.6e-18 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 92
AccB1I GGYRCC 2 cut(s) 92, 451
AccB7I CCANNNNNTGG 1 cut(s) 593
AccI GTMKAC 1 cut(s) 627
AciI CCGC 1 cut(s) 575
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 2 cut(s) 94, 543
AfiI CCNNNNNNNGG 3 cut(s) 372, 395, 593
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 2 cut(s) 245, 344
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 4 cut(s) 184, 479, 492, 517
AluI AGCT 4 cut(s) 184, 479, 492, 517
Alw26I GTCTC 3 cut(s) 21, 209, 554
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 75, 212
ApeKI GCWGC 2 cut(s) 233, 552
ApoI RAATTY 1 cut(s) 252
AseI ATTAAT 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 208, 523
AsuHPI GGTGA 1 cut(s) 125
AvaI CYCGRG 2 cut(s) 75, 212
AvaII GGWCC 2 cut(s) 208, 523
AxyI CCTNAGG 1 cut(s) 644
BanI GGYRCC 2 cut(s) 92, 451
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
BbvI GCAGC 2 cut(s) 220, 539
BccI CCATC 3 cut(s) 28, 366, 587
BciT130I CCWGG 1 cut(s) 528
BcoDI GTCTC 3 cut(s) 21, 209, 554
BfmI CTRYAG 1 cut(s) 414
BglII AGATCT 1 cut(s) 418
BisI GCNGC 2 cut(s) 234, 553
BlsI GCNGC 2 cut(s) 235, 554
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 2 cut(s) 208, 523
BmeT110I CYCGRG 2 cut(s) 75, 212
BmgT120I GGNCC 2 cut(s) 208, 523
BmiI GGNNCC 4 cut(s) 94, 453, 525, 599
BmrFI CCNGG 1 cut(s) 528
BmrI ACTGGG 1 cut(s) 596
BmuI ACTGGG 1 cut(s) 596
BplI GAGNNNNNCTC 2 cut(s) 602, 634
BpmI CTGGAG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 395, 593
Bse1I ACTGG 2 cut(s) 568, 602
Bse21I CCTNAGG 1 cut(s) 644
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 2 cut(s) 377, 385
BseLI CCNNNNNNNGG 3 cut(s) 372, 395, 593
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 7 cut(s) 128, 168, 171, 192, 407, 536, 570
BseNI ACTGG 2 cut(s) 568, 602
BseXI GCAGC 2 cut(s) 220, 539
BshNI GGYRCC 2 cut(s) 92, 451
BsiHKCI CYCGRG 2 cut(s) 75, 212
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 3 cut(s) 372, 395, 593
BsmAI GTCTC 3 cut(s) 21, 209, 554
BsmBI CGTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 238
BsoBI CYCGRG 2 cut(s) 75, 212
Bsp143I GATC 2 cut(s) 418, 661
BspACI CCGC 1 cut(s) 575
BspCNI CTCAG 7 cut(s) 129, 167, 172, 193, 406, 537, 569
BspLI GGNNCC 4 cut(s) 94, 453, 525, 599
BspT107I GGYRCC 2 cut(s) 92, 451
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 2 cut(s) 568, 602
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 2 cut(s) 418, 661
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 186
BstF5I GGATG 2 cut(s) 377, 385
BstKTI GATC 2 cut(s) 421, 664
BstMAI GTCTC 3 cut(s) 21, 209, 554
BstMBI GATC 2 cut(s) 418, 661
BstNI CCWGG 1 cut(s) 528
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 1 cut(s) 414
BstV1I GCAGC 2 cut(s) 220, 539
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
Bsu36I CCTNAGG 1 cut(s) 644
BtsCI GGATG 2 cut(s) 377, 385
BtsIMutI CAGTG 2 cut(s) 177, 198
Cac8I GCNNGC 1 cut(s) 186
CaiI CAGNNNCTG 1 cut(s) 563
Cfr13I GGNCC 2 cut(s) 208, 523
Csp6I GTAC 2 cut(s) 93, 542
CviAII CATG 2 cut(s) 54, 406
CviJI RGCY 8 cut(s) 128, 184, 314, 461, 479, 492, 517, 552
CviKI_1 RGCY 8 cut(s) 128, 184, 314, 461, 479, 492, 517, 552
CviQI GTAC 2 cut(s) 93, 542
DpnI GATC 2 cut(s) 420, 663
DpnII GATC 2 cut(s) 418, 661
Eco47I GGWCC 2 cut(s) 208, 523
Eco81I CCTNAGG 1 cut(s) 644
Eco88I CYCGRG 2 cut(s) 75, 212
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 526
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 2 cut(s) 57, 409
FaiI YATR 8 cut(s) 55, 150, 261, 317, 381, 407, 426, 609
FaqI GGGAC 1 cut(s) 238
FatI CATG 2 cut(s) 53, 405
FauI CCCGC 1 cut(s) 582
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 234, 553
FokI GGATG 2 cut(s) 372, 384
Fsp4HI GCNGC 2 cut(s) 234, 553
GluI GCNGC 2 cut(s) 234, 553
GsuI CTGGAG 1 cut(s) 549
HapII CCGG 1 cut(s) 90
Hin1II CATG 2 cut(s) 57, 409
HinfI GANTC 5 cut(s) 116, 226, 290, 376, 567
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 4 cut(s) 124, 157, 273, 559
Hpy188III TCNNGA 3 cut(s) 214, 242, 652
Hpy8I GTNNAC 1 cut(s) 628
Hpy99I CGWCG 2 cut(s) 124, 476
HpyAV CCTTC 2 cut(s) 199, 399
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 4 cut(s) 48, 69, 624, 667
HpyCH4V TGCA 3 cut(s) 188, 424, 467
HpySE526I ACGT 4 cut(s) 48, 69, 624, 667
Hsp92II CATG 2 cut(s) 57, 409
KpnI GGTACC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 418, 661
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 2 cut(s) 220, 539
MaeII ACGT 4 cut(s) 48, 69, 624, 667
MaeIII GTNAC 4 cut(s) 4, 49, 262, 500
MalI GATC 2 cut(s) 420, 663
MboI GATC 2 cut(s) 418, 661
MboII GAAGA 2 cut(s) 54, 602
MflI RGATCY 1 cut(s) 418
MluCI AATT 2 cut(s) 252, 301
MlyI GAGTC 1 cut(s) 220
MmeI TCCRAC 2 cut(s) 102, 506
MnlI CCTC 8 cut(s) 37, 163, 221, 242, 451, 524, 532, 542
MseI TTAA 3 cut(s) 105, 513, 670
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 528
NdeII GATC 2 cut(s) 418, 661
NlaIII CATG 2 cut(s) 57, 409
NlaIV GGNNCC 4 cut(s) 94, 453, 525, 599
NmuCI GTSAC 1 cut(s) 49
NspI RCATGY 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 212
PciI ACATGT 1 cut(s) 53
PfeI GAWTC 4 cut(s) 116, 290, 376, 567
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 2 cut(s) 235, 554
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 208
PscI ACATGT 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 4 cut(s) 94, 453, 525, 599
PspPI GGNCC 2 cut(s) 208, 523
PspPPI RGGWCCY 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 2 cut(s) 94, 543
RsaNI GTAC 2 cut(s) 93, 542
SaqAI TTAA 3 cut(s) 105, 513, 670
SatI GCNGC 2 cut(s) 234, 553
Sau3AI GATC 2 cut(s) 418, 661
Sau96I GGNCC 2 cut(s) 208, 523
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 528
SfcI CTRYAG 1 cut(s) 414
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 2 cut(s) 208, 523
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 2 cut(s) 252, 301
SsiI CCGC 1 cut(s) 575
SspI AATATT 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 4 cut(s) 51, 72, 627, 670
TaqI TCGA 3 cut(s) 213, 638, 651
TasI AATT 2 cut(s) 252, 301
TfiI GAWTC 4 cut(s) 116, 290, 376, 567
Tru1I TTAA 3 cut(s) 105, 513, 670
Tru9I TTAA 3 cut(s) 105, 513, 670
TscAI CASTG 2 cut(s) 184, 205
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 233, 552
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 5 cut(s) 137, 332, 336, 368, 394
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 2 cut(s) 184, 205
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 2 cut(s) 208, 523
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 252
XceI RCATGY 1 cut(s) 57
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.