Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002227

Physical Location & Seq

Genomic Coordinates Reverse (-)

26395600 .. 26400134

Gene Structure 4535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G253200.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACTGCAGTTCCTCTCATTCAGGTTGGAAGTTGTGCTATGGCAGAAAGAAATTGTCTAAGCTTTATGAACATCAATGAGGAAAACGCTAGCGCGTCATCTTTGTGTTCAGTGGAATCCGGCAGTAGTTTCTGCGCATGTATATTTTGCGGTTCAAATTTTTTGAAGACAACTAGCCAATGTCAGAACATCACCGTTCATACTGTTACTCAGTTCTCTCCTTCTCCTGTAATCTCCTGCACAGAAAGTGTGCCTCAAGGTGCTAATATTTCACAAATTACAGTCGATACAGAGCATGGACAATCACAGTCATCTAATCAATCAACATCATCTACGGTCCTGCGAGATGTACATATTTCAGCAAATTTAATGGAAGATTTCCTTGGGCTTGCTAAAGACAATACAGAGAAGGATCTAGAAACATGTGGGACTCTTGGCGCCTTTCTGAAAAATGGAACATTCTATGTAACAACTCTGATCATACCCAAACAGGAATGCACTTCCAACTCTTGCCAGGCGACAAATGACGAGGAAGTTTTCTCCATACAAAACGAACAATCACTTTTCCCTGTAGGATGGATCCATACACATCCTTCTCAAAAATGTTTCATGTCATCAGTGGATCTGCACACTCATTATTCATGTCAGGTTATGATACCTGAGGCATTTGCTGTTGTCATGGCTCCGACAGATACCTCAAGGAGCTATGGAATATTTCGTCTATCTGACCCCGGTGGGATGAGTGTCCTAAAAGAGTGCCAAGAGCAAGGGTTTCATCCTCACAAAGAAACCACAGATGGGAGCCCCATTTACGAGCACTGCTCTAATGTCTACACAAACTCAAATCTGAGGTTTGAAATCTTTGACTTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB

Protein Analysis

292

Amino Acids

31.83

Weight (kDa)

4.87

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10600 AT1G10600 AT1G10600
fragaria_vesca	FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380
malus_domestica	MD16G1093400.v1.1
prunus_persica	Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1
pyrus_communis	pycom16g07940
rosa_chinensis	RchiOBHm_Chr4g0443791
rosa_laevigata	RLG00000005888
rosa_multiflora	Rmu_sc0005632.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384370
rosa_rugosa	Rorug04G0347300 Rorug04G0347400 Rorug04G0347500 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4BG418500 Rh4DG413800
rosa_wichuraiana	Rw4G035010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	831
AccII	CGCG	1 cut(s)	95
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	4 cut(s)	420, 574, 587, 630
AcsI	RAATTY	2 cut(s)	157, 364
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	798
AflIII	ACRYGT	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	156, 166, 857
AjnI	CCWGG	1 cut(s)	513
AjuI	GAANNNNNNNTTGG	2 cut(s)	366, 398
AluBI	AGCT	2 cut(s)	63, 705
AluI	AGCT	2 cut(s)	63, 705
Alw21I	GWGCWC	1 cut(s)	819
AlwI	GGATC	4 cut(s)	420, 574, 587, 630
ApoI	RAATTY	2 cut(s)	157, 364
AspLEI	GCGC	3 cut(s)	95, 137, 440
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	1 cut(s)	184
AsuNHI	GCTAGC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	819
BccI	CCATC	2 cut(s)	570, 791
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	732
BfaI	CTAG	3 cut(s)	90, 174, 416
BfmI	CTRYAG	2 cut(s)	6, 570
BfoI	RGCGCY	1 cut(s)	441
Bme1390I	CCNGG	2 cut(s)	515, 732
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	4 cut(s)	439, 581, 684, 803
BmrFI	CCNGG	2 cut(s)	515, 732
BmtI	GCTAGC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BpuEI	CTTGAG	2 cut(s)	240, 682
BpuMI	CCSGG	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	382, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
Bse21I	CCTNAGG	1 cut(s)	660
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	2 cut(s)	382, 730
BseGI	GGATG	4 cut(s)	581, 589, 744, 775
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	224, 651, 839
BsgI	GTGCAG	2 cut(s)	223, 611
Bsh1236I	CGCG	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	819
BsiSI	CCGG	2 cut(s)	120, 732
BslFI	GGGAC	1 cut(s)	442
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	806, 819
Bsp1407I	TGTACA	1 cut(s)	349
Bsp143I	GATC	4 cut(s)	412, 477, 579, 622
BspACI	CCGC	1 cut(s)	150
BspCNI	CTCAG	3 cut(s)	223, 652, 840
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	4 cut(s)	439, 581, 684, 803
BspMAI	CTGCAG	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	93
BspPI	GGATC	4 cut(s)	420, 574, 587, 630
BspT107I	GGYRCC	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	349
BssECI	CCNNGG	2 cut(s)	382, 730
BssMI	GATC	4 cut(s)	412, 477, 579, 622
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	5 cut(s)	196, 205, 283, 309, 337
BstACI	GRCGYC	1 cut(s)	438
BstAUI	TGTACA	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	91, 390
BstDEI	CTNAG	4 cut(s)	59, 210, 660, 848
BstF5I	GGATG	4 cut(s)	581, 589, 744, 775
BstFNI	CGCG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	3 cut(s)	95, 137, 440
BstKTI	GATC	4 cut(s)	415, 480, 582, 625
BstMBI	GATC	4 cut(s)	412, 477, 579, 622
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	2 cut(s)	141, 426
BstSCI	CCNGG	2 cut(s)	513, 730
BstSFI	CTRYAG	2 cut(s)	6, 570
BstUI	CGCG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	173
BstX2I	RGATCY	3 cut(s)	412, 579, 622
BstYI	RGATCY	3 cut(s)	412, 579, 622
Bsu36I	CCTNAGG	1 cut(s)	660
BtsCI	GGATG	4 cut(s)	581, 589, 744, 775
BtsI	GCAGTG	1 cut(s)	817
BtsIMutI	CAGTG	3 cut(s)	117, 624, 817
Cac8I	GCNNGC	2 cut(s)	91, 390
CfoI	GCGC	3 cut(s)	95, 137, 440
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	6 cut(s)	138, 296, 423, 610, 642, 679
CviJI	RGCY	6 cut(s)	63, 177, 388, 683, 705, 804
CviKI_1	RGCY	6 cut(s)	63, 177, 388, 683, 705, 804
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	4 cut(s)	59, 210, 660, 848
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	4 cut(s)	414, 479, 581, 624
DpnII	GATC	4 cut(s)	412, 477, 579, 622
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	806
Eco47I	GGWCC	1 cut(s)	337
Eco81I	CCTNAGG	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	806
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	6 cut(s)	141, 299, 426, 613, 645, 682
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	6 cut(s)	137, 295, 422, 609, 641, 678
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	831
FokI	GGATG	4 cut(s)	576, 588, 751, 762
FriOI	GRGCYC	1 cut(s)	806
FspBI	CTAG	3 cut(s)	90, 174, 416
FspI	TGCGCA	1 cut(s)	136
GlaI	GCGC	3 cut(s)	94, 136, 439
HaeII	RGCGCY	1 cut(s)	441
HapII	CCGG	2 cut(s)	120, 732
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	3 cut(s)	95, 137, 440
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	141, 299, 426, 613, 645, 682
Hin6I	GCGC	3 cut(s)	93, 135, 438
HinP1I	GCGC	3 cut(s)	93, 135, 438
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	2 cut(s)	116, 430
HpaII	CCGG	2 cut(s)	120, 732
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	832
Hpy188I	TCNGA	6 cut(s)	186, 447, 477, 687, 727, 849
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	1 cut(s)	832
HpyAV	CCTTC	3 cut(s)	231, 403, 603
HpyCH4III	ACNGT	5 cut(s)	196, 205, 283, 309, 337
HpyCH4V	TGCA	4 cut(s)	8, 240, 498, 628
HpyF3I	CTNAG	4 cut(s)	59, 210, 660, 848
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	6 cut(s)	141, 299, 426, 613, 645, 682
HspAI	GCGC	3 cut(s)	93, 135, 438
KasI	GGCGCC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	412, 477, 579, 622
LmnI	GCTCC	3 cut(s)	688, 702, 801
MaeI	CTAG	3 cut(s)	90, 174, 416
MaeIII	GTNAC	2 cut(s)	205, 466
MalI	GATC	4 cut(s)	414, 479, 581, 624
MboI	GATC	4 cut(s)	412, 477, 579, 622
MboII	GAAGA	2 cut(s)	178, 386
MflI	RGATCY	3 cut(s)	412, 579, 622
MhlI	GDGCHC	2 cut(s)	806, 819
MluCI	AATT	4 cut(s)	52, 157, 276, 364
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	3 cut(s)	7, 528, 710
MnlI	CCTC	8 cut(s)	24, 73, 264, 523, 655, 706, 789, 843
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	1 cut(s)	103
MspI	CCGG	2 cut(s)	120, 732
MspR9I	CCNGG	2 cut(s)	515, 732
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	732
NdeII	GATC	4 cut(s)	412, 477, 579, 622
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	6 cut(s)	141, 299, 426, 613, 645, 682
NlaIV	GGNNCC	4 cut(s)	439, 581, 684, 803
NsbI	TGCGCA	1 cut(s)	136
NspI	RCATGY	2 cut(s)	141, 426
PciI	ACATGT	1 cut(s)	422
PctI	GAATGC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	424
PluTI	GGCGCC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	424
PscI	ACATGT	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	513
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	4 cut(s)	439, 581, 684, 803
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	3 cut(s)	412, 579, 622
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	368
Sau3AI	GATC	4 cut(s)	412, 477, 579, 622
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	515, 732
SduI	GDGCHC	2 cut(s)	806, 819
SetI	ASST	8 cut(s)	27, 65, 262, 651, 661, 698, 707, 854
SfcI	CTRYAG	2 cut(s)	6, 570
SfoI	GGCGCC	1 cut(s)	439
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	103
SmlI	CTYRAG	2 cut(s)	255, 697
SmoI	CTYRAG	2 cut(s)	255, 697
Sse9I	AATT	4 cut(s)	52, 157, 276, 364
SsiI	CCGC	1 cut(s)	150
SspDI	GGCGCC	1 cut(s)	437
SspI	AATATT	2 cut(s)	268, 714
SspMI	CTAG	3 cut(s)	90, 174, 416
StyD4I	CCNGG	2 cut(s)	513, 730
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	5 cut(s)	196, 205, 283, 309, 337
TaqI	TCGA	1 cut(s)	285
TasI	AATT	4 cut(s)	52, 157, 276, 364
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	3 cut(s)	117, 624, 824
TspDTI	ATGAA	5 cut(s)	83, 188, 598, 630, 764
TspRI	CASTG	3 cut(s)	117, 624, 824
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	2 cut(s)	157, 364
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	2 cut(s)	141, 426
XmiI	GTMKAC	1 cut(s)	831
XspI	CTAG	3 cut(s)	90, 174, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.