Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002227

Physical Location & Seq

Genomic Coordinates Forward (+)

5257978 .. 5260558

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07940.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCAGGGAGAAACCATATAAGCGCCAGGGGCATCGATGGGGAAAATCCTAGGTTGTCATCTTTGTGTTCAGTGGAATCTGGCAGTAGTTGCTTCGCATGTAAATTTCCTGGTCCAAACTTTTTGAAGACAACTAGTGACTATCAGAATATCACAGTTCATTCTGTTACTCAATGCTCTCCTTCACCTGTAATCTCTTGCACAGAAAAGCCTCAAAGTTCTAATATATCACAAGTTATGGACGCAAATACAGAACATGGTCAATCACAGTCTTCTAATAAATCAGCATCATCTGGGGTCCTGCGAGATTCAGCTCGGTTAATGGAAGATTTCCTTGATCTTGCTAAAGAAAACACGGAGAAGGATCTAGAAACCTGCGGGATTCTTGGCGCTTTTCTTAAAAATGGAACATTCTATGTGACAACTCTGATCATACCCAAACAGGAATCAACTTCCAGCTCTTGTCAGGCAACTAACGATGAGGAAGCTTTTGCCATACAAAACGAACACTCACTTTTTCCGGTTGGATGGATCCATACACATCCTTCTCAAAGTTGTTTCATGTCATCAGTGGATTTGCACACTCATTATTCGTATCAGGTTATGATACCTGAGGCTTTTGCCATTGTCATGGCTCCAACTGATACCTCAAGGAGCTATGGAATATTTCGGCTATCTGATCCTGGCGGGATGAGCGTCCTGAAAGCGTGCCAGGAGCAAGGATTTCATCCTCACGGAGAAACAACTGACGGGAGTCCCGTTTTCGAGCACTGCTCTAATGTATACAAGAATTCAAATCTGAGGTTCGAAATCTTCGACTTGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB

Protein Analysis

276

Amino Acids

30.1

Weight (kDa)

5.4

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10600 AT1G10600 AT1G10600
fragaria_vesca	FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380
malus_domestica	MD16G1093400.v1.1
prunus_persica	Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1
pyrus_communis	pycom16g07940
rosa_chinensis	RchiOBHm_Chr4g0443791
rosa_laevigata	RLG00000005888
rosa_multiflora	Rmu_sc0005632.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384370
rosa_rugosa	Rorug04G0347300 Rorug04G0347400 Rorug04G0347500 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4BG418500 Rh4DG413800
rosa_wichuraiana	Rw4G035010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	783
AciI	CCGC	2 cut(s)	378, 687
AclWI	GGATC	4 cut(s)	372, 526, 539, 674
AcsI	RAATTY	2 cut(s)	104, 790
AgsI	TTSAA	2 cut(s)	127, 795
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	4 cut(s)	26, 109, 682, 711
AluBI	AGCT	4 cut(s)	314, 459, 488, 657
AluI	AGCT	4 cut(s)	314, 459, 488, 657
Alw21I	GWGCWC	1 cut(s)	771
AlwI	GGATC	4 cut(s)	372, 526, 539, 674
ApoI	RAATTY	2 cut(s)	104, 790
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	2 cut(s)	26, 392
AspS9I	GGNCC	2 cut(s)	113, 298
AsuHPI	GGTGA	1 cut(s)	177
AsuII	TTCGAA	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	113, 298
AvrII	CCTAGG	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	612
BamHI	GGATCC	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	134, 264
Bbv12I	GWGCWC	1 cut(s)	771
BccI	CCATC	2 cut(s)	32, 522
BciT130I	CCWGG	4 cut(s)	28, 111, 684, 713
BclI	TGATCA	1 cut(s)	429
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	3 cut(s)	51, 135, 368
BfoI	RGCGCY	2 cut(s)	27, 393
BfuAI	ACCTGC	1 cut(s)	383
BlnI	CCTAGG	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	28, 111, 684, 713
Bme18I	GGWCC	2 cut(s)	113, 298
BmgT120I	GGNCC	2 cut(s)	113, 298
BmiI	GGNNCC	3 cut(s)	299, 533, 636
BmrFI	CCNGG	4 cut(s)	28, 111, 684, 713
BmsI	GCATC	2 cut(s)	42, 296
BoxI	GACNNNNGTC	1 cut(s)	753
BpiI	GAAGAC	2 cut(s)	134, 264
BplI	GAGNNNNNCTC	2 cut(s)	758, 790
Bpu14I	TTCGAA	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	634
Bsa29I	ATCGAT	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	27, 50
BsaWI	WCCGGW	1 cut(s)	520
Bse21I	CCTNAGG	1 cut(s)	612
BseBI	CCWGG	4 cut(s)	28, 111, 684, 713
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	27, 50
BseGI	GGATG	4 cut(s)	533, 541, 696, 727
BseMII	CTCAG	2 cut(s)	603, 791
BshVI	ATCGAT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	771
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	741
BsmFI	GGGAC	1 cut(s)	741
Bsp119I	TTCGAA	1 cut(s)	807
Bsp1286I	GDGCHC	1 cut(s)	771
Bsp143I	GATC	5 cut(s)	337, 364, 429, 531, 679
BspACI	CCGC	2 cut(s)	378, 687
BspCNI	CTCAG	2 cut(s)	604, 792
BspDI	ATCGAT	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	299, 533, 636
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	4 cut(s)	372, 526, 539, 674
BspT104I	TTCGAA	1 cut(s)	807
BssECI	CCNNGG	2 cut(s)	27, 50
BssMI	GATC	5 cut(s)	337, 364, 429, 531, 679
BssNAI	GTATAC	1 cut(s)	784
BssT1I	CCWWGG	1 cut(s)	50
Bst1107I	GTATAC	1 cut(s)	784
Bst2UI	CCWGG	4 cut(s)	28, 111, 684, 713
Bst4CI	ACNGT	2 cut(s)	157, 270
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	2 cut(s)	612, 800
BstF5I	GGATG	4 cut(s)	533, 541, 696, 727
BstH2I	RGCGCY	2 cut(s)	27, 393
BstHHI	GCGC	2 cut(s)	26, 392
BstKTI	GATC	5 cut(s)	340, 367, 432, 534, 682
BstMBI	GATC	5 cut(s)	337, 364, 429, 531, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 90, 693
BstNI	CCWGG	4 cut(s)	28, 111, 684, 713
BstNSI	RCATGY	1 cut(s)	102
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	4 cut(s)	26, 109, 682, 711
BstV2I	GAAGAC	2 cut(s)	134, 264
BstX2I	RGATCY	2 cut(s)	364, 531
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	2 cut(s)	364, 531
BstZ17I	GTATAC	1 cut(s)	784
Bsu15I	ATCGAT	1 cut(s)	36
Bsu36I	CCTNAGG	1 cut(s)	612
BsuTUI	ATCGAT	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	533, 541, 696, 727
BtsI	GCAGTG	1 cut(s)	769
BtsIMutI	CAGTG	3 cut(s)	78, 576, 769
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	709
CfoI	GCGC	2 cut(s)	26, 392
Cfr13I	GGNCC	2 cut(s)	113, 298
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	2 cut(s)	251, 685
CviAII	CATG	4 cut(s)	99, 257, 562, 631
CviJI	RGCY	8 cut(s)	211, 314, 459, 488, 617, 635, 657, 673
CviKI_1	RGCY	8 cut(s)	211, 314, 459, 488, 617, 635, 657, 673
DdeI	CTNAG	2 cut(s)	612, 800
DpnI	GATC	5 cut(s)	339, 366, 431, 533, 681
DpnII	GATC	5 cut(s)	337, 364, 429, 531, 679
Eco130I	CCWWGG	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	113, 298
Eco81I	CCTNAGG	1 cut(s)	612
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	4 cut(s)	26, 109, 682, 711
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	4 cut(s)	102, 260, 565, 634
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	741
FatI	CATG	4 cut(s)	98, 256, 561, 630
FauI	CCCGC	2 cut(s)	371, 680
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	783
FokI	GGATG	4 cut(s)	528, 540, 703, 714
FspBI	CTAG	3 cut(s)	51, 135, 368
GlaI	GCGC	2 cut(s)	25, 391
HaeII	RGCGCY	2 cut(s)	27, 393
HapII	CCGG	1 cut(s)	521
HgaI	GACGC	2 cut(s)	251, 685
HhaI	GCGC	2 cut(s)	26, 392
Hin1II	CATG	4 cut(s)	102, 260, 565, 634
Hin6I	GCGC	2 cut(s)	24, 390
HinP1I	GCGC	2 cut(s)	24, 390
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	5 cut(s)	77, 308, 382, 446, 754
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	4 cut(s)	147, 429, 679, 801
Hpy188III	TCNNGA	2 cut(s)	368, 700
Hpy8I	GTNNAC	1 cut(s)	784
HpyAV	CCTTC	3 cut(s)	192, 355, 555
HpyCH4III	ACNGT	2 cut(s)	157, 270
HpyCH4V	TGCA	2 cut(s)	201, 580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 90, 693
HpyF3I	CTNAG	2 cut(s)	612, 800
Hsp92II	CATG	4 cut(s)	102, 260, 565, 634
HspAI	GCGC	2 cut(s)	24, 390
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	337, 364, 429, 531, 679
LmnI	GCTCC	3 cut(s)	640, 654, 715
LweI	GCATC	2 cut(s)	42, 296
MaeI	CTAG	3 cut(s)	51, 135, 368
MaeIII	GTNAC	3 cut(s)	137, 166, 418
MalI	GATC	5 cut(s)	339, 366, 431, 533, 681
MboI	GATC	5 cut(s)	337, 364, 429, 531, 679
MboII	GAAGA	4 cut(s)	139, 264, 338, 805
MflI	RGATCY	2 cut(s)	364, 531
MhlI	GDGCHC	1 cut(s)	771
MluCI	AATT	2 cut(s)	104, 790
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	2 cut(s)	505, 662
MnlI	CCTC	6 cut(s)	222, 475, 607, 658, 741, 795
MseI	TTAA	2 cut(s)	320, 399
MslI	CAYNNNNRTG	2 cut(s)	64, 629
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	4 cut(s)	28, 111, 684, 713
MvaI	CCWGG	4 cut(s)	28, 111, 684, 713
MwoI	GCNNNNNNNGC	3 cut(s)	30, 90, 693
NdeII	GATC	5 cut(s)	337, 364, 429, 531, 679
NlaIII	CATG	4 cut(s)	102, 260, 565, 634
NlaIV	GGNNCC	3 cut(s)	299, 533, 636
NmuCI	GTSAC	2 cut(s)	137, 418
NspI	RCATGY	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	807
PcsI	WCGNNNNNNNCGW	2 cut(s)	756, 813
PfeI	GAWTC	4 cut(s)	77, 308, 382, 446
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
PpuMI	RGGWCCY	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	4 cut(s)	26, 109, 682, 711
PspGI	CCWGG	4 cut(s)	26, 109, 682, 711
PspN4I	GGNNCC	3 cut(s)	299, 533, 636
PspPI	GGNCC	2 cut(s)	113, 298
PspPPI	RGGWCCY	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	364, 531
RseI	CAYNNNNRTG	2 cut(s)	64, 629
SaqAI	TTAA	2 cut(s)	320, 399
Sau3AI	GATC	5 cut(s)	337, 364, 429, 531, 679
Sau96I	GGNCC	2 cut(s)	113, 298
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	4 cut(s)	28, 111, 684, 713
SduI	GDGCHC	1 cut(s)	771
SfaNI	GCATC	2 cut(s)	42, 296
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	2 cut(s)	113, 298
SmiMI	CAYNNNNRTG	2 cut(s)	64, 629
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	2 cut(s)	104, 790
SsiI	CCGC	2 cut(s)	378, 687
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	3 cut(s)	51, 135, 368
StyD4I	CCNGG	4 cut(s)	26, 109, 682, 711
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	157, 270
TaqI	TCGA	4 cut(s)	36, 765, 807, 816
TasI	AATT	2 cut(s)	104, 790
TfiI	GAWTC	4 cut(s)	77, 308, 382, 446
Tru1I	TTAA	2 cut(s)	320, 399
Tru9I	TTAA	2 cut(s)	320, 399
TscAI	CASTG	3 cut(s)	78, 576, 776
TseFI	GTSAC	2 cut(s)	137, 418
Tsp45I	GTSAC	2 cut(s)	137, 418
TspDTI	ATGAA	3 cut(s)	149, 550, 716
TspGWI	ACGGA	2 cut(s)	371, 750
TspRI	CASTG	3 cut(s)	78, 576, 776
VpaK11BI	GGWCC	2 cut(s)	113, 298
XapI	RAATTY	2 cut(s)	104, 790
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	102
XmaJI	CCTAGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	783
XspI	CTAG	3 cut(s)	51, 135, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.