Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002227

Physical Location & Seq

Genomic Coordinates Forward (+)

51987884 .. 51989742

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0347300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCGTCTCGCCTTCGGGTTTGACCAGCAGAGCTATAGTGTGCACCAAGGGGCTCAACACCAGAGCTACTCCATGCACCAGGAGGAGGCTTGGCACTCAAACAATGAGTATCACAATTCCCATATTTCAGGTGTGAAAATTGCTTCTGCAGCTGCTTCTATATGCTTTGATTCTGAGTTTTCGAAACACAATGCATTGTTTAATGGAAGCCATGCTACGAATGATGGCTGGCTTGGCCAAAACATGCACCAAAAGCAAAGTAATGGATGGTCTGGCTCTGGCACAAGTTGTACTAGTTACTATAACCATTCTGCTTCTGGCGCTGGCTCTAGTGGCAAAAAGTGCTTGCCTGCAATAACTGTTCTCAATGCTTCACAATTCTCAAATGGTGGTGCTATGTTCAATATTGCATCAATGCAAAATGCTAGTGGATCATATGAAACTATCCAGGAGGTGAAATATGTTCCGGCTGCAACAATGAGAGTGCAGGAAGTGAGATACGAGCGCAGTAGTGCCAATTGGGACAGCCATGAGGATGATGGCCTCCAGCATTGCATAATGGGTACCGGAATGTTGAGTGGATTTCAAAGGGTAGAGCCTAAAAGGAGAGATTTTTGCCATCAAATTAGGCGTGCTTGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB

Protein Analysis

214

Amino Acids

23.68

Weight (kDa)

6.88

Isoelectric Point (pI)

56.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10600 AT1G10600 AT1G10600
fragaria_vesca	FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380 FvH4_4g34380
malus_domestica	MD16G1093400.v1.1
prunus_persica	Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1 Prupe.1G253200_v2.0.a1
pyrus_communis	pycom16g07940
rosa_chinensis	RchiOBHm_Chr4g0443791
rosa_laevigata	RLG00000005888
rosa_multiflora	Rmu_sc0005632.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384370
rosa_rugosa	Rorug04G0347300 Rorug04G0347400 Rorug04G0347500 Rorug04G0347600 Rorug04G0347600
rosa_samantha	Rh4BG418500 Rh4DG413800
rosa_wichuraiana	Rw4G035010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	563
AccB1I	GGYRCC	1 cut(s)	563
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	235
AfaI	GTAC	2 cut(s)	292, 565
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	403, 587
AhlI	ACTAGT	1 cut(s)	293
AjnI	CCWGG	2 cut(s)	78, 447
AluBI	AGCT	3 cut(s)	33, 66, 152
AluI	AGCT	3 cut(s)	33, 66, 152
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	439
AoxI	GGCC	2 cut(s)	235, 541
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	149, 152, 470
Asp718I	GGTACC	1 cut(s)	563
AspLEI	GCGC	2 cut(s)	323, 507
AsuHPI	GGTGA	1 cut(s)	466
AsuII	TTCGAA	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	199, 231
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	139, 161, 457
BccI	CCATC	4 cut(s)	218, 261, 533, 627
BciT130I	CCWGG	2 cut(s)	80, 449
BcoDI	GTCTC	1 cut(s)	11
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	3 cut(s)	294, 330, 426
BfmI	CTRYAG	2 cut(s)	34, 147
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	3 cut(s)	150, 153, 471
BlsI	GCNGC	3 cut(s)	151, 154, 472
Bme1390I	CCNGG	2 cut(s)	80, 449
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	2 cut(s)	80, 449
BmsI	GCATC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	530
Bpu14I	TTCGAA	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	46
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	80, 449
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	272, 541
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	98
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	139, 161, 457
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	237, 543
BshNI	GGYRCC	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	467, 567
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	11
BsmBI	CGTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	237, 543
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	2 cut(s)	45, 55
Bsp143I	GATC	1 cut(s)	431
BspANI	GGCC	2 cut(s)	237, 543
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	151
BspPI	GGATC	1 cut(s)	439
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	563
BsrDI	GCAATG	1 cut(s)	550
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	80, 449
Bst4CI	ACNGT	1 cut(s)	361
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	5 cut(s)	230, 325, 347, 351, 633
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	272, 541
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	2 cut(s)	323, 507
BstKTI	GATC	1 cut(s)	434
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	431
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 234, 253, 320, 333, 342
BstNI	CCWGG	2 cut(s)	80, 449
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	78, 447
BstSFI	CTRYAG	2 cut(s)	34, 147
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	139, 161, 457
BsuRI	GGCC	2 cut(s)	237, 543
BtsCI	GGATG	2 cut(s)	272, 541
Cac8I	GCNNGC	5 cut(s)	230, 325, 347, 351, 633
CfoI	GCGC	2 cut(s)	323, 507
Csp6I	GTAC	2 cut(s)	291, 564
CviAII	CATG	4 cut(s)	73, 212, 244, 530
CviQI	GTAC	2 cut(s)	291, 564
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	433
DpnII	GATC	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	78, 447
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	4 cut(s)	76, 215, 247, 533
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	4 cut(s)	72, 211, 243, 529
FauNDI	CATATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	150, 153, 471
FokI	GGATG	2 cut(s)	279, 548
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	3 cut(s)	150, 153, 471
FspBI	CTAG	3 cut(s)	294, 330, 426
GlaI	GCGC	2 cut(s)	322, 506
GluI	GCNGC	3 cut(s)	150, 153, 471
GsuI	CTGGAG	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	237, 543
HapII	CCGG	2 cut(s)	467, 567
HhaI	GCGC	2 cut(s)	323, 507
Hin1II	CATG	4 cut(s)	76, 215, 247, 533
Hin6I	GCGC	2 cut(s)	321, 505
HinP1I	GCGC	2 cut(s)	321, 505
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	2 cut(s)	467, 567
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 234, 253, 320, 333, 342
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	76, 215, 247, 533
HspAI	GCGC	2 cut(s)	321, 505
KpnI	GGTACC	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	431
Lsp1109I	GCAGC	3 cut(s)	139, 161, 457
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	3 cut(s)	294, 330, 426
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	433
MboI	GATC	1 cut(s)	431
MfeI	CAATTG	1 cut(s)	517
MhlI	GDGCHC	2 cut(s)	45, 55
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	5 cut(s)	115, 138, 377, 517, 624
MluNI	TGGCCA	1 cut(s)	237
MnlI	CCTC	5 cut(s)	76, 79, 445, 526, 554
Mox20I	TGGCCA	1 cut(s)	237
Mph1103I	ATGCAT	1 cut(s)	196
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	2 cut(s)	201, 643
MslI	CAYNNNNRTG	1 cut(s)	534
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	2 cut(s)	467, 567
MspR9I	CCNGG	2 cut(s)	80, 449
MunI	CAATTG	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	80, 449
MwoI	GCNNNNNNNGC	6 cut(s)	149, 234, 253, 320, 333, 342
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	1 cut(s)	431
NlaIII	CATG	4 cut(s)	76, 215, 247, 533
NlaIV	GGNNCC	1 cut(s)	565
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	3 cut(s)	151, 154, 472
Psp6I	CCWGG	2 cut(s)	78, 447
PspGI	CCWGG	2 cut(s)	78, 447
PspN4I	GGNNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	292, 565
RsaNI	GTAC	2 cut(s)	291, 564
RseI	CAYNNNNRTG	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	201, 643
SatI	GCNGC	3 cut(s)	150, 153, 471
Sau3AI	GATC	1 cut(s)	431
ScrFI	CCNGG	2 cut(s)	80, 449
SduI	GDGCHC	2 cut(s)	45, 55
SetI	ASST	5 cut(s)	35, 68, 133, 154, 456
SfaNI	GCATC	1 cut(s)	419
SfcI	CTRYAG	2 cut(s)	34, 147
SfuI	TTCGAA	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	534
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	5 cut(s)	115, 138, 377, 517, 624
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	3 cut(s)	294, 330, 426
StyD4I	CCNGG	2 cut(s)	78, 447
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	182
TasI	AATT	5 cut(s)	115, 138, 377, 517, 624
TatI	WGTACW	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	201, 643
Tru9I	TTAA	2 cut(s)	201, 643
TseI	GCWGC	3 cut(s)	149, 152, 470
TspDTI	ATGAA	1 cut(s)	453
VneI	GTGCAC	1 cut(s)	41
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	2 cut(s)	314, 536
XspI	CTAG	3 cut(s)	294, 330, 426
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.