Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004476

Physical Location & Seq

Genomic Coordinates Forward (+)

3565257 .. 3568106

Gene Structure 2850 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGCAGGGGCGGCCTCAGCGCTGTTTCTGCTCGATATCAAAGGTCGTGTTCTCGTGTGGCGCGATTACCGTGGCGATGTCACCGCTGCTCAAGCTGAGCGTTTCTTCACCAAACTCATCGAGACAGAGGGTGATTCACAGTCAAATGATCCGGTTGCTTATGATAATGGCGTGACCTACATGTTTGTACAGCATAGTAACATTTACCTCATGATAGCGTCCAGACAGAACTGTAATGCTGCCAGTCTTCTCTTCTTCTTGCATCGTGTAGTCGATGTCTTCAAGCATTACTTCGAGGAGTTAGAGGAAGAATCTTTGAGAGATAACTTTGTGGTAGTGTATGAGTTACTTGACGAGATGATGGACTTTGGTTACCCTCAGTTTACTGAGGCAAGAATCCTTAGTGAATTCATCAAGACTGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTCACTAATTCTGTCTCATGGAGGAGTGAGGGGTTAAAGTTTAAGAAAAACGAAGTTTTCTTGGATGTGATAGAGAGTGTAAATATCCTTGTGAACAGTAATGGGCAAATTGTCAGGTCTGATGTCGTTGGAGCTTTGAAGATGCGAACATACTTGAGTGGAATGCCAGAGTGTAAGCTAGGCTTGAATGACAGAATATTGTTGGAGGCACAGGGACGAGCAATAAAAGGAAAAGCCATTGATTTGGAGGACATCAAATTTCATCAGTGTGTTCGATTAGCCCGTTTTGAGAACGACAGGACAATATCATTCATACCACCTGATGGATCTTTTGATCTTATGACGTATAGACTCAGTACTCAGGTAAAGCCTCTTATATGGGTGGAAGCGCATATAGAGAGGCATTCCAGAAGTCGTGTTGAGATGCTAGTAAAAGCTAGAAGCCAATTCAAGGACAGAAGCTATGCAACAAGTGTTGAGATTGAGTTACCTGTACCAACTGATGCGTATAACCCCGATGTAAGAACATCTCTCGGGTCGGCCGCATATGCTCCTGAGAAAGATGCACTGGTCTGGAAGATACAATATTTCTATGGGAACAAGGAGCATACATTGAAAGCAGATTTCCATCTTCCAAGTATAGCCGCAGAGGAAGCAACGCCTGAGCGAAAAGCTCCAATCCGTGTCAAATTTGAGATCCCAAAATTCATAGTTTCAGGAATACAGGTTCGATACCTGAAGATCATTGAGAAGAGTGGGTACCAGGCACATCCATGGGTGAGATATATAACCATGGCTGGTGAGTACGAACTGAGACTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

428

Amino Acids

49.22

Weight (kDa)

6.2

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	7 - 125	1.2e-07	Clathrin adaptor complex small chain
Adap_comp_sub	PF00928	159 - 426	1.7e-92	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10730 AT1G60780
fragaria_vesca	FvH4_4g25870 FvH4_4g25870 FvH4_5g05940 FvH4_5g05940
malus_domestica	MD06G1169300.v1.1 MD13G1097400.v1.1 MD14G1174600.v1.1 MD16G1098500.v1.1
prunus_persica	Prupe.1G248000_v2.0.a1 Prupe.1G248000_v2.0.a1 Prupe.5G168100_v2.0.a1
pyrus_communis	pycom06g15080 pycom14g14570 pycom16g08380
rosa_chinensis	RchiOBHm_Chr4g0433301 RchiOBHm_Chr7g0192901
rosa_laevigata	RLG00000004314 RLG00000006765
rosa_multiflora	Rmu_sc0000354.1_g000005 Rmu_sc0002040.1_g000054
rosa_roxburghii	Rroxscaffold_3G00262560 Rroxscaffold_5G00374860
rosa_rugosa	Rorug04G0267900 Rorug07G0005500
rosa_samantha	Rh4BG329900 Rh4CG345300 Rh4DG326600 Rh7AG131200
rosa_wichuraiana	Rw4G027900 Rw7G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1221
AccB1I	GGYRCC	1 cut(s)	1221
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	11, 84, 1005, 1107
AclWI	GGATC	3 cut(s)	143, 796, 1153
AcoI	YGGCCR	1 cut(s)	1002
AcsI	RAATTY	4 cut(s)	407, 719, 1151, 1166
AcuI	CTGAAG	1 cut(s)	1220
AfaI	GTAC	5 cut(s)	189, 820, 957, 1223, 1268
AfeI	AGCGCT	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	785, 913
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	5 cut(s)	283, 601, 649, 913, 1078
AjnI	CCWGG	1 cut(s)	1224
AloI	GAACNNNNNNTCC	2 cut(s)	1173, 1205
AluBI	AGCT	6 cut(s)	95, 596, 640, 899, 924, 1136
AluI	AGCT	6 cut(s)	95, 596, 640, 899, 924, 1136
Alw26I	GTCTC	4 cut(s)	116, 442, 481, 1270
AlwI	GGATC	3 cut(s)	143, 796, 1153
Ama87I	CYCGRG	1 cut(s)	995
Aor51HI	AGCGCT	1 cut(s)	21
AoxI	GGCC	2 cut(s)	12, 1002
ApeKI	GCWGC	2 cut(s)	86, 239
ApoI	RAATTY	4 cut(s)	407, 719, 1151, 1166
Asp718I	GGTACC	1 cut(s)	1221
AspLEI	GCGC	3 cut(s)	22, 63, 853
AsuHPI	GGTGA	5 cut(s)	73, 100, 143, 1252, 1274
AvaI	CYCGRG	1 cut(s)	995
BanI	GGYRCC	1 cut(s)	1221
BarI	GAAGNNNNNNTAC	2 cut(s)	1205, 1237
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	239, 271
BbvCI	CCTCAGC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	73, 226
BccI	CCATC	3 cut(s)	355, 779, 1098
BciT130I	CCWGG	1 cut(s)	1226
BcoDI	GTCTC	4 cut(s)	116, 442, 481, 1270
BfaI	CTAG	3 cut(s)	641, 890, 900
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	5 cut(s)	12, 87, 240, 1005, 1107
BlpI	GCTNAGC	1 cut(s)	96
BlsI	GCNGC	5 cut(s)	13, 88, 241, 1006, 1108
BmcAI	AGTACT	1 cut(s)	820
Bme1390I	CCNGG	1 cut(s)	1226
BmeT110I	CYCGRG	1 cut(s)	995
BmiI	GGNNCC	1 cut(s)	1223
BmrFI	CCNGG	1 cut(s)	1226
BmsI	GCATC	6 cut(s)	271, 412, 594, 876, 955, 1015
BpiI	GAAGAC	2 cut(s)	239, 271
Bpu10I	CCTNAGC	2 cut(s)	16, 1125
Bpu1102I	GCTNAGC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	75, 637
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	3 cut(s)	70, 1235, 1254
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	785, 913
Bse1I	ACTGG	2 cut(s)	243, 1035
Bse8I	GATNNNNATC	1 cut(s)	1089
BseBI	CCWGG	1 cut(s)	1226
BseDI	CCNNGG	3 cut(s)	70, 1235, 1254
BseGI	GGATG	2 cut(s)	532, 1231
BseJI	GATNNNNATC	1 cut(s)	1089
BseLI	CCNNNNNNNGG	2 cut(s)	785, 913
BseMII	CTCAG	9 cut(s)	30, 87, 378, 392, 829, 836, 1008, 1116, 1265
BseNI	ACTGG	2 cut(s)	243, 1035
BseRI	GAGGAG	2 cut(s)	311, 499
BseX3I	CGGCCG	1 cut(s)	1002
BseXI	GCAGC	2 cut(s)	73, 226
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	1005
BshFI	GGCC	2 cut(s)	14, 1004
BshNI	GGYRCC	1 cut(s)	1221
BsiEI	CGRYCG	1 cut(s)	1005
BsiHKCI	CYCGRG	1 cut(s)	995
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	2 cut(s)	785, 913
BsmAI	GTCTC	4 cut(s)	116, 442, 481, 1270
BsmFI	GGGAC	1 cut(s)	690
BsmI	GAATGC	2 cut(s)	630, 865
BsnI	GGCC	2 cut(s)	14, 1004
Bso31I	GGTCTC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	995
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	5 cut(s)	148, 788, 796, 1158, 1203
Bsp1720I	GCTNAGC	1 cut(s)	96
Bsp19I	CCATGG	2 cut(s)	1235, 1254
BspACI	CCGC	4 cut(s)	11, 84, 1005, 1107
BspANI	GGCC	2 cut(s)	14, 1004
BspCNI	CTCAG	9 cut(s)	29, 88, 379, 391, 828, 835, 1009, 1117, 1266
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	1223
BspPI	GGATC	3 cut(s)	143, 796, 1153
BspT107I	GGYRCC	1 cut(s)	1221
BspTNI	GGTCTC	1 cut(s)	442
BsrGI	TGTACA	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	243, 1035
BssECI	CCNNGG	3 cut(s)	70, 1235, 1254
BssMI	GATC	5 cut(s)	148, 788, 796, 1158, 1203
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	2 cut(s)	1235, 1254
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	1226
Bst4CI	ACNGT	4 cut(s)	71, 141, 233, 560
Bst6I	CTCTTC	2 cut(s)	257, 1208
BstAUI	TGTACA	1 cut(s)	187
BstDSI	CCRYGG	3 cut(s)	70, 1235, 1254
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	532, 1231
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	3 cut(s)	22, 63, 853
BstKTI	GATC	5 cut(s)	151, 791, 799, 1161, 1206
BstMAI	GTCTC	4 cut(s)	116, 442, 481, 1270
BstMBI	GATC	5 cut(s)	148, 788, 796, 1158, 1203
BstMCI	CGRYCG	1 cut(s)	1005
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 17, 28, 92, 1010, 1115
BstNI	CCWGG	1 cut(s)	1226
BstNSI	RCATGY	1 cut(s)	184
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	1224
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	73, 226
BstV2I	GAAGAC	2 cut(s)	239, 271
BstX2I	RGATCY	2 cut(s)	788, 1158
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	2 cut(s)	788, 1158
BstZI	CGGCCG	1 cut(s)	1002
BsuRI	GGCC	2 cut(s)	14, 1004
BtgI	CCRYGG	3 cut(s)	70, 1235, 1254
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	532, 1231
BtsIMutI	CAGTG	2 cut(s)	734, 1028
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	3 cut(s)	22, 63, 853
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	5 cut(s)	188, 819, 956, 1222, 1267
CviAII	CATG	6 cut(s)	181, 211, 480, 1236, 1255, 1282
CviQI	GTAC	5 cut(s)	188, 819, 956, 1222, 1267
DpnI	GATC	5 cut(s)	150, 790, 798, 1160, 1205
DpnII	GATC	5 cut(s)	148, 788, 796, 1158, 1203
EaeI	YGGCCR	1 cut(s)	1002
EagI	CGGCCG	1 cut(s)	1002
Eam1104I	CTCTTC	2 cut(s)	257, 1208
EarI	CTCTTC	2 cut(s)	257, 1208
EclXI	CGGCCG	1 cut(s)	1002
Eco130I	CCWWGG	2 cut(s)	1235, 1254
Eco31I	GGTCTC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	37
Eco47III	AGCGCT	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	1002
Eco57I	CTGAAG	1 cut(s)	1220
Eco88I	CYCGRG	1 cut(s)	995
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	1224
EcoRV	GATATC	1 cut(s)	37
EcoT14I	CCWWGG	2 cut(s)	1235, 1254
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	1235, 1254
FaeI	CATG	6 cut(s)	184, 214, 483, 1239, 1258, 1285
FalI	AAGNNNNNCTT	4 cut(s)	275, 307, 629, 661
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	6 cut(s)	180, 210, 479, 1235, 1254, 1281
FauNDI	CATATG	1 cut(s)	1009
Fnu4HI	GCNGC	5 cut(s)	12, 87, 240, 1005, 1107
FokI	GGATG	2 cut(s)	539, 1218
Fsp4HI	GCNGC	5 cut(s)	12, 87, 240, 1005, 1107
FspBI	CTAG	3 cut(s)	641, 890, 900
GlaI	GCGC	3 cut(s)	21, 62, 852
GluI	GCNGC	5 cut(s)	12, 87, 240, 1005, 1107
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	14, 1004
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	3 cut(s)	22, 63, 853
Hin1II	CATG	6 cut(s)	184, 214, 483, 1239, 1258, 1285
Hin6I	GCGC	3 cut(s)	20, 61, 851
HinP1I	GCGC	3 cut(s)	20, 61, 851
HinfI	GANTC	5 cut(s)	134, 311, 396, 813, 1278
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	5 cut(s)	73, 100, 143, 1252, 1274
Hpy166II	GTNNAC	2 cut(s)	384, 556
Hpy188I	TCNGA	1 cut(s)	583
Hpy188III	TCNNGA	8 cut(s)	121, 211, 222, 415, 870, 1016, 1036, 1179
Hpy8I	GTNNAC	2 cut(s)	384, 556
HpyCH4III	ACNGT	4 cut(s)	71, 141, 233, 560
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	4 cut(s)	262, 425, 929, 1028
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 17, 28, 92, 1010, 1115
HpySE526I	ACGT	1 cut(s)	806
Hsp92II	CATG	6 cut(s)	184, 214, 483, 1239, 1258, 1285
HspAI	GCGC	3 cut(s)	20, 61, 851
KpnI	GGTACC	1 cut(s)	1225
Kzo9I	GATC	5 cut(s)	148, 788, 796, 1158, 1203
LmnI	GCTCC	4 cut(s)	593, 1018, 1066, 1141
Lsp1109I	GCAGC	2 cut(s)	73, 226
LweI	GCATC	6 cut(s)	271, 412, 594, 876, 955, 1015
MaeI	CTAG	3 cut(s)	641, 890, 900
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	8 cut(s)	79, 172, 197, 345, 371, 439, 463, 948
MalI	GATC	5 cut(s)	150, 790, 798, 1160, 1205
MboI	GATC	5 cut(s)	148, 788, 796, 1158, 1203
MflI	RGATCY	2 cut(s)	788, 1158
MluCI	AATT	7 cut(s)	407, 469, 570, 719, 908, 1151, 1166
MlyI	GAGTC	2 cut(s)	807, 1272
MmeI	TCCRAC	2 cut(s)	571, 645
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	2 cut(s)	497, 504
MslI	CAYNNNNRTG	2 cut(s)	729, 1234
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	1226
Mva1269I	GAATGC	2 cut(s)	630, 865
MvaI	CCWGG	1 cut(s)	1226
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	6 cut(s)	11, 17, 28, 92, 1010, 1115
NcoI	CCATGG	2 cut(s)	1235, 1254
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	5 cut(s)	148, 788, 796, 1158, 1203
NlaIII	CATG	6 cut(s)	184, 214, 483, 1239, 1258, 1285
NlaIV	GGNNCC	1 cut(s)	1223
NmuCI	GTSAC	3 cut(s)	79, 172, 463
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	184
PagI	TCATGA	1 cut(s)	210
PciI	ACATGT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 742
PctI	GAATGC	2 cut(s)	630, 865
PfeI	GAWTC	3 cut(s)	134, 311, 396
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	5 cut(s)	13, 88, 241, 1006, 1108
PleI	GAGTC	2 cut(s)	807, 1272
PpsI	GAGTC	2 cut(s)	807, 1272
PscI	ACATGT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	1224
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	1224
PspN4I	GGNNCC	1 cut(s)	1223
PsuI	RGATCY	2 cut(s)	788, 1158
RsaI	GTAC	5 cut(s)	189, 820, 957, 1223, 1268
RsaNI	GTAC	5 cut(s)	188, 819, 956, 1222, 1267
RseI	CAYNNNNRTG	2 cut(s)	729, 1234
SaqAI	TTAA	2 cut(s)	497, 504
SatI	GCNGC	5 cut(s)	12, 87, 240, 1005, 1107
Sau3AI	GATC	5 cut(s)	148, 788, 796, 1158, 1203
ScaI	AGTACT	1 cut(s)	820
SchI	GAGTC	2 cut(s)	807, 1272
ScrFI	CCNGG	1 cut(s)	1226
SfaNI	GCATC	6 cut(s)	271, 412, 594, 876, 955, 1015
SmiMI	CAYNNNNRTG	2 cut(s)	729, 1234
SmlI	CTYRAG	2 cut(s)	90, 616
SmoI	CTYRAG	2 cut(s)	90, 616
Sse9I	AATT	7 cut(s)	407, 469, 570, 719, 908, 1151, 1166
SsiI	CCGC	4 cut(s)	11, 84, 1005, 1107
SspI	AATATT	2 cut(s)	660, 1049
SspMI	CTAG	3 cut(s)	641, 890, 900
StyD4I	CCNGG	1 cut(s)	1224
StyI	CCWWGG	2 cut(s)	1235, 1254
TaaI	ACNGT	4 cut(s)	71, 141, 233, 560
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	6 cut(s)	33, 120, 273, 294, 736, 1192
TasI	AATT	7 cut(s)	407, 469, 570, 719, 908, 1151, 1166
TatI	WGTACW	2 cut(s)	187, 818
TauI	GCSGC	3 cut(s)	14, 1007, 1109
TfiI	GAWTC	3 cut(s)	134, 311, 396
Tru1I	TTAA	2 cut(s)	497, 504
Tru9I	TTAA	2 cut(s)	497, 504
TscAI	CASTG	2 cut(s)	734, 1035
TseFI	GTSAC	3 cut(s)	79, 172, 463
TseI	GCWGC	2 cut(s)	86, 239
Tsp45I	GTSAC	3 cut(s)	79, 172, 463
TspDTI	ATGAA	4 cut(s)	400, 713, 763, 1159
TspGWI	ACGGA	1 cut(s)	1133
TspRI	CASTG	2 cut(s)	734, 1035
Van91I	CCANNNNNTGG	1 cut(s)	785
XapI	RAATTY	4 cut(s)	407, 719, 1151, 1166
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	3 cut(s)	641, 890, 900
ZrmI	AGTACT	1 cut(s)	820
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.