Prupe.1G248000_v2.0.a1

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
26072172 .. 26075694
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G248000.2

Sequence Viewer

Length: 1287 bp
ATGGCAGGGGCAGTCTCGGCGCTGTTCCTCCTAGACATCAAAGGCCGCGTTCTCATCTGGCGCGACTATCGTGGCGACGTCTCCGCCGTTCAAGCCGAGCGCTTCTTCACTAAGCTCATCGAGAAAGAGGTTGATCCGGAATCCCATGATCCAGTTGTGCATGATAATGGCGTAAGCTACTTGTTTATACAGCATAACAATGTCTACTTGATGACTGCGTCCAGGCAGAACTGCAATGCCGCTAGTCTTCTCTTCTTTCTACACCGAATAGTTGATGTTTTCAAGCATTACTTTGAAGAGTTAGAAGAGGAATCACTTAGAGATAACTTTGTGGTTGTGTATGAGTTGCTTGATGAGATGATGGACTTTGGTTACCCTCAGTATACTGAAGCCAAGATTCTCAGTGAATTTATCAAGACTGATGCTTACAGGATGGAAGTTACACAGAGACCTCCCATGGCTGTAACAAATGCGGTGTCTTGGCGCAGTGAAGGGATACGCTACAAGAAGAATGAGGTTTTCCTGGATGTGGTGGAGAGTGTTAATATACTTGTCAACAGCAATGGACAAATCATTAGGTCTGATGTTGTTGGTGCGTTGAAGATGAGAACTTATTTGAGTGGTATGCCAGAGTGTAAGCTGGGCTTAAATGATAGAGTTCTGTTGGAGGCACAAGGCCGAGCAACAAAGGGGAAGGCCATTGATTTGGAAGACATCAAATTTCATCAGTGTGTGCGTTTGGCCCGGTTTGAAAATGACCGGACAATATCCTTTGTACCACCTGATGGAGCTTTTGATCTCATGACATATAGGCTGAGTACACAGGTTAAGCCTCTAATTTGGGTTGAAGCTCAAATTGAAAGGCATTCGAAAAGTCGTATTGAGATTCTGGTAAAAGCCAGAAGTCAGTTCAAGGAGCGTAGCACTGCAACAAATGTGGAGATTGAGGTCCCTGTGTTATCTGATGCCACCAACCCTGAGGTTCGGACATCATTAGGATCTGCAGCATATGCACCTGAAAGTGATGCGCTTATCTGGAAAATAAGATCTTTTCCTGGTGGCAAGGAGTATATGTTGAGAGCAGAGTTTCGTCTTCCAAGTATAACAGCTGAAGAAGCAACTCCTGAGAGAAAAGCTCCTATACGTGTGAAGTTCGAGATACCATATTTTACCGTTTCTGGAATACAGGTTCGTTACCTGAAGATTATTGAAAAAAGCGGATACCAAGCTCTTCCATGGGTGAGATACATAACCATGGCTGGCGAGTATGAATTAAGGCTTATATAA

Protein Analysis

429

Amino Acids

49.15

Weight (kDa)

6.09

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccB7I CCANNNNNTGG 1 cut(s) 785
AccI GTMKAC 2 cut(s) 204, 383
AccII CGCG 2 cut(s) 48, 63
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 5 cut(s) 46, 84, 240, 473, 1218
AclWI GGATC 3 cut(s) 128, 143, 1006
AcsI RAATTY 2 cut(s) 407, 719
AcuI CTGAAG 3 cut(s) 408, 1131, 1220
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 777, 820
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 529, 785
AflIII ACRYGT 1 cut(s) 1144
AgsI TTSAA 9 cut(s) 92, 283, 296, 601, 752, 848, 860, 913, 1211
AjnI CCWGG 3 cut(s) 221, 522, 1054
AloI GAACNNNNNNTCC 2 cut(s) 1173, 1205
AluBI AGCT 8 cut(s) 115, 177, 640, 791, 851, 1109, 1136, 1229
AluI AGCT 8 cut(s) 115, 177, 640, 791, 851, 1109, 1136, 1229
Alw26I GTCTC 3 cut(s) 19, 85, 442
AlwI GGATC 3 cut(s) 128, 143, 1006
Aor13HI TCCGGA 1 cut(s) 136
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 4 cut(s) 43, 676, 696, 741
ApeKI GCWGC 1 cut(s) 1004
ApoI RAATTY 2 cut(s) 407, 719
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspLEI GCGC 5 cut(s) 22, 63, 102, 486, 1030
AspS9I GGNCC 2 cut(s) 742, 949
AsuC2I CCSGG 1 cut(s) 745
AsuHPI GGTGA 1 cut(s) 1252
AsuII TTCGAA 1 cut(s) 869
AvaII GGWCC 1 cut(s) 949
AxyI CCTNAGG 1 cut(s) 978
BbsI GAAGAC 3 cut(s) 239, 717, 1085
BbvI GCAGC 1 cut(s) 1016
BccI CCATC 3 cut(s) 355, 427, 779
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 3 cut(s) 223, 524, 1056
BciVI GTATCC 2 cut(s) 489, 1214
BcnI CCSGG 1 cut(s) 745
BcoDI GTCTC 3 cut(s) 19, 85, 442
BfaI CTAG 2 cut(s) 32, 243
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 2 cut(s) 23, 103
BfuI GTATCC 2 cut(s) 489, 1214
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 3 cut(s) 46, 240, 1005
BlsI GCNGC 3 cut(s) 47, 241, 1006
Bme1390I CCNGG 4 cut(s) 223, 524, 745, 1056
Bme18I GGWCC 1 cut(s) 949
BmgT120I GGNCC 2 cut(s) 742, 949
BmiI GGNNCC 1 cut(s) 951
BmrFI CCNGG 4 cut(s) 223, 524, 745, 1056
BmsI GCATC 3 cut(s) 412, 955, 1015
BpiI GAAGAC 3 cut(s) 239, 717, 1085
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
Bpu14I TTCGAA 1 cut(s) 869
BpuMI CCSGG 1 cut(s) 745
BsaAI YACGTR 1 cut(s) 1145
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 3 cut(s) 456, 1235, 1254
BsaWI WCCGGW 2 cut(s) 136, 759
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 785
Bse1I ACTGG 1 cut(s) 152
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 2 cut(s) 241, 568
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 3 cut(s) 223, 524, 1056
BseDI CCNNGG 3 cut(s) 456, 1235, 1254
BseGI GGATG 2 cut(s) 438, 532
BseLI CCNNNNNNNGG 2 cut(s) 529, 785
BseMI GCAATG 2 cut(s) 241, 568
BseMII CTCAG 5 cut(s) 392, 415, 806, 969, 1116
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 1016
BseYI CCCAGC 1 cut(s) 640
Bsh1236I CGCG 2 cut(s) 48, 63
BshFI GGCC 4 cut(s) 45, 678, 698, 743
BsiSI CCGG 3 cut(s) 137, 745, 760
BslFI GGGAC 1 cut(s) 935
BslI CCNNNNNNNGG 2 cut(s) 529, 785
BsmAI GTCTC 3 cut(s) 19, 85, 442
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 935
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 4 cut(s) 45, 678, 698, 743
Bso31I GGTCTC 1 cut(s) 442
Bsp119I TTCGAA 1 cut(s) 869
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 5 cut(s) 133, 148, 796, 998, 1046
Bsp19I CCATGG 3 cut(s) 456, 1235, 1254
BspACI CCGC 5 cut(s) 46, 84, 240, 473, 1218
BspANI GGCC 4 cut(s) 45, 678, 698, 743
BspCNI CTCAG 5 cut(s) 391, 414, 807, 970, 1117
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 2 cut(s) 48, 63
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 951
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 3 cut(s) 128, 143, 1006
BspQI GCTCTTC 1 cut(s) 1236
BspT104I TTCGAA 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 442
BsrDI GCAATG 2 cut(s) 241, 568
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 3 cut(s) 456, 1235, 1254
BssMI GATC 5 cut(s) 133, 148, 796, 998, 1046
BssNAI GTATAC 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 3 cut(s) 456, 1235, 1254
Bst1107I GTATAC 1 cut(s) 384
Bst2UI CCWGG 3 cut(s) 223, 524, 1056
Bst4CI ACNGT 1 cut(s) 1174
Bst6I CTCTTC 4 cut(s) 257, 291, 300, 1236
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBAI YACGTR 1 cut(s) 1145
BstBI TTCGAA 1 cut(s) 869
BstC8I GCNNGC 1 cut(s) 1261
BstDEI CTNAG 7 cut(s) 111, 317, 378, 401, 815, 978, 1125
BstDSI CCRYGG 3 cut(s) 456, 1235, 1254
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 2 cut(s) 438, 532
BstFNI CGCG 2 cut(s) 48, 63
BstH2I RGCGCY 2 cut(s) 23, 103
BstHHI GCGC 5 cut(s) 22, 63, 102, 486, 1030
BstKTI GATC 5 cut(s) 136, 151, 799, 1001, 1049
BstMAI GTCTC 3 cut(s) 19, 85, 442
BstMBI GATC 5 cut(s) 133, 148, 796, 998, 1046
BstMWI GCNNNNNNNGC 4 cut(s) 17, 92, 1010, 1115
BstNI CCWGG 3 cut(s) 223, 524, 1056
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 4 cut(s) 221, 522, 743, 1054
BstSFI CTRYAG 1 cut(s) 1002
BstUI CGCG 2 cut(s) 48, 63
BstV1I GCAGC 1 cut(s) 1016
BstV2I GAAGAC 3 cut(s) 239, 717, 1085
BstX2I RGATCY 2 cut(s) 998, 1046
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 2 cut(s) 998, 1046
BstZ17I GTATAC 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 978
BsuI GTATCC 2 cut(s) 489, 1214
BsuRI GGCC 4 cut(s) 45, 678, 698, 743
BtgI CCRYGG 3 cut(s) 456, 1235, 1254
BtsCI GGATG 2 cut(s) 438, 532
BtsI GCAGTG 2 cut(s) 493, 924
BtsIMutI CAGTG 4 cut(s) 409, 493, 734, 924
Cac8I GCNNGC 1 cut(s) 1261
CciI TCATGA 1 cut(s) 801
CfoI GCGC 5 cut(s) 22, 63, 102, 486, 1030
Cfr13I GGNCC 2 cut(s) 742, 949
CseI GACGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 776, 819
CspCI CAANNNNNGTGG 2 cut(s) 918, 953
CviAII CATG 6 cut(s) 146, 161, 457, 802, 1236, 1255
CviQI GTAC 2 cut(s) 776, 819
DdeI CTNAG 7 cut(s) 111, 317, 378, 401, 815, 978, 1125
DpnI GATC 5 cut(s) 135, 150, 798, 1000, 1048
DpnII GATC 5 cut(s) 133, 148, 796, 998, 1046
Eam1104I CTCTTC 4 cut(s) 257, 291, 300, 1236
EarI CTCTTC 4 cut(s) 257, 291, 300, 1236
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 456, 1235, 1254
Eco31I GGTCTC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 949
Eco47III AGCGCT 1 cut(s) 101
Eco57I CTGAAG 3 cut(s) 408, 1131, 1220
Eco81I CCTNAGG 1 cut(s) 978
Eco91I GGTNACC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 949
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 221, 522, 1054
EcoT14I CCWWGG 3 cut(s) 456, 1235, 1254
ErhI CCWWGG 3 cut(s) 456, 1235, 1254
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 6 cut(s) 149, 164, 460, 805, 1239, 1258
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 629, 661
FaqI GGGAC 1 cut(s) 935
FatI CATG 6 cut(s) 145, 160, 456, 801, 1235, 1254
FauNDI CATATG 1 cut(s) 1009
FblI GTMKAC 2 cut(s) 204, 383
Fnu4HI GCNGC 3 cut(s) 46, 240, 1005
FokI GGATG 2 cut(s) 445, 539
Fsp4HI GCNGC 3 cut(s) 46, 240, 1005
FspBI CTAG 2 cut(s) 32, 243
GlaI GCGC 5 cut(s) 21, 62, 101, 485, 1029
GluI GCNGC 3 cut(s) 46, 240, 1005
GsaI CCCAGC 1 cut(s) 644
HaeII RGCGCY 2 cut(s) 23, 103
HaeIII GGCC 4 cut(s) 45, 678, 698, 743
HapII CCGG 3 cut(s) 137, 745, 760
HgaI GACGC 1 cut(s) 207
HhaI GCGC 5 cut(s) 22, 63, 102, 486, 1030
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 6 cut(s) 149, 164, 460, 805, 1239, 1258
Hin6I GCGC 5 cut(s) 20, 61, 100, 484, 1028
HinP1I GCGC 5 cut(s) 20, 61, 100, 484, 1028
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 4 cut(s) 140, 311, 397, 886
HpaII CCGG 3 cut(s) 137, 745, 760
HphI GGTGA 1 cut(s) 1252
Hpy166II GTNNAC 4 cut(s) 205, 384, 556, 821
Hpy188I TCNGA 3 cut(s) 583, 964, 987
Hpy188III TCNNGA 8 cut(s) 121, 137, 415, 802, 1036, 1124, 1156, 1179
Hpy8I GTNNAC 4 cut(s) 205, 384, 556, 821
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 485, 688
HpyCH4III ACNGT 1 cut(s) 1174
HpyCH4IV ACGT 2 cut(s) 78, 1144
HpyCH4V TGCA 5 cut(s) 160, 234, 929, 1004, 1013
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 92, 1010, 1115
HpyF3I CTNAG 7 cut(s) 111, 317, 378, 401, 815, 978, 1125
HpySE526I ACGT 2 cut(s) 78, 1144
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 6 cut(s) 149, 164, 460, 805, 1239, 1258
HspAI GCGC 5 cut(s) 20, 61, 100, 484, 1028
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 5 cut(s) 133, 148, 796, 998, 1046
LguI GCTCTTC 1 cut(s) 1236
LmnI GCTCC 3 cut(s) 788, 916, 1141
Lsp1109I GCAGC 1 cut(s) 1016
LweI GCATC 3 cut(s) 412, 955, 1015
MaeI CTAG 2 cut(s) 32, 243
MaeII ACGT 2 cut(s) 78, 1144
MaeIII GTNAC 4 cut(s) 371, 439, 463, 1193
MalI GATC 5 cut(s) 135, 150, 798, 1000, 1048
MboI GATC 5 cut(s) 133, 148, 796, 998, 1046
MflI RGATCY 2 cut(s) 998, 1046
MluCI AATT 5 cut(s) 407, 719, 837, 855, 1271
MmeI TCCRAC 1 cut(s) 645
MroI TCCGGA 1 cut(s) 136
MseI TTAA 4 cut(s) 543, 647, 828, 1274
MslI CAYNNNNRTG 4 cut(s) 165, 198, 729, 1253
MspA1I CMGCKG 1 cut(s) 1109
MspI CCGG 3 cut(s) 137, 745, 760
MspR9I CCNGG 4 cut(s) 223, 524, 745, 1056
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 3 cut(s) 223, 524, 1056
MvnI CGCG 2 cut(s) 48, 63
MwoI GCNNNNNNNGC 4 cut(s) 17, 92, 1010, 1115
NciI CCSGG 1 cut(s) 745
NcoI CCATGG 3 cut(s) 456, 1235, 1254
NdeI CATATG 1 cut(s) 1009
NdeII GATC 5 cut(s) 133, 148, 796, 998, 1046
NlaIII CATG 6 cut(s) 149, 164, 460, 805, 1239, 1258
NlaIV GGNNCC 1 cut(s) 951
NmeAIII GCCGAG 2 cut(s) 121, 704
NspV TTCGAA 1 cut(s) 869
PagI TCATGA 1 cut(s) 801
PciSI GCTCTTC 1 cut(s) 1236
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PctI GAATGC 1 cut(s) 865
PfeI GAWTC 4 cut(s) 140, 311, 397, 886
PflFI GACNNNGTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 522
PkrI GCNGC 3 cut(s) 47, 241, 1006
Ppu21I YACGTR 1 cut(s) 1145
PpuMI RGGWCCY 1 cut(s) 949
Psp5II RGGWCCY 1 cut(s) 949
Psp6I CCWGG 3 cut(s) 221, 522, 1054
PspEI GGTNACC 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 221, 522, 1054
PspN4I GGNNCC 1 cut(s) 951
PspPI GGNCC 2 cut(s) 742, 949
PspPPI RGGWCCY 1 cut(s) 949
PstI CTGCAG 1 cut(s) 1006
PsuI RGATCY 2 cut(s) 998, 1046
PsyI GACNNNGTC 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 1109
RsaI GTAC 2 cut(s) 777, 820
RsaNI GTAC 2 cut(s) 776, 819
RseI CAYNNNNRTG 4 cut(s) 165, 198, 729, 1253
SapI GCTCTTC 1 cut(s) 1236
SaqAI TTAA 4 cut(s) 543, 647, 828, 1274
SatI GCNGC 3 cut(s) 46, 240, 1005
Sau3AI GATC 5 cut(s) 133, 148, 796, 998, 1046
Sau96I GGNCC 2 cut(s) 742, 949
ScrFI CCNGG 4 cut(s) 223, 524, 745, 1056
SfaNI GCATC 3 cut(s) 412, 955, 1015
SfcI CTRYAG 1 cut(s) 1002
SfuI TTCGAA 1 cut(s) 869
SinI GGWCC 1 cut(s) 949
SmiMI CAYNNNNRTG 4 cut(s) 165, 198, 729, 1253
Sse9I AATT 5 cut(s) 407, 719, 837, 855, 1271
SsiI CCGC 5 cut(s) 46, 84, 240, 473, 1218
SspMI CTAG 2 cut(s) 32, 243
StyD4I CCNGG 4 cut(s) 221, 522, 743, 1054
StyI CCWWGG 3 cut(s) 456, 1235, 1254
TaaI ACNGT 1 cut(s) 1174
TaiI ACGT 2 cut(s) 81, 1147
TaqI TCGA 3 cut(s) 120, 869, 1155
TasI AATT 5 cut(s) 407, 719, 837, 855, 1271
TatI WGTACW 1 cut(s) 818
TauI GCSGC 2 cut(s) 48, 242
TfiI GAWTC 4 cut(s) 140, 311, 397, 886
Tru1I TTAA 4 cut(s) 543, 647, 828, 1274
Tru9I TTAA 4 cut(s) 543, 647, 828, 1274
TscAI CASTG 4 cut(s) 409, 493, 734, 931
TseI GCWGC 1 cut(s) 1004
TspDTI ATGAA 2 cut(s) 713, 1284
TspRI CASTG 4 cut(s) 409, 493, 734, 931
Tth111I GACNNNGTC 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 949
XapI RAATTY 2 cut(s) 407, 719
XmiI GTMKAC 2 cut(s) 204, 383
XspI CTAG 2 cut(s) 32, 243
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.