Rmu_sc0000354.1_g000005

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000354.1
Physical Location & Seq
Reverse (-)
19990 .. 24309
4320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000354.1_g000005.1.cds

Sequence Viewer

Length: 1287 bp
atggcaggggcagtctcggggctgttcctcctagacatcaaaggccgcgttctcatctggcgcgactatcgtggcgacgtctccgccgtccaggccgagcgcttcttcaccaagctcatcgagaaagaggttgatgcagagtcacacgatccggttgtgcacgataatggcgtaagctacatgtttctacagcataacaatgtgtacctgatggcggcgtctaggcagaactgcaatgctgccagcattctcttctttctgcaccgcattgttgatgtgttcaagcattattttgaagagttagaagaggaatcgcttagggataactttgtggttgtgtatgagttgctggatgaaatgatggacttcggttaccctcagtttactgaagcgaagattttaagtgagtttatcaagactgatgcttacaggatggaagttaaccagaggcccccaatggccgtaacaaatgcagtgtcttggcgcagtgaagggatacgttacaagaagaatgaggttttccttgatgtagtggagagcgttaatatactcgtcaacagcaatggtcaaatcattaggtctgatgttgttggtgctttgaagatgagaacttatttgagtggtatgcccgagtgtaagctgggcttaaatgatagagtgctattggaggcacaaggcagaacaacaaagggaaaggccattgatttggaagacatcaaatttcatcagtgtgtgcgtttggcccggtttgaaaatgatcggacaatatccttcgttccacctgatggagcttttgatctcatgacttatagactgagtacgcaggtcaaacctctaatttgggttgaagctcaaattgaaaggcattcaaaaagtcgcattgagatcctggtaaaagctcgaagccagttcaaggagcgtagcactgcaacaaatgttgagattgaggtacctgtgcaaaccgatgctactaacccaaatattcggacatcattaggatctgcaacatatgcacctgaaaatgatgcactaatgtggaagataagatcttttcctggtggcaaggagtatatgttgagagcagagtttcaccttccaagtgtaacagctgaagaagcaactcctgaaagaaaagctcctatacgtgtgaagtttgagataccatattttactgtttccggaatacaggttcgttacctgaagattattgaaaagagtggataccaagctcttccatgggtgagatacataaccatggcaggcgagtatgaattaaggcttatatga

Protein Analysis

428

Amino Acids

49.19

Weight (kDa)

6.15

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 814
Acc65I GGTACC 1 cut(s) 949
AccB1I GGYRCC 1 cut(s) 949
AccB7I CCANNNNNTGG 1 cut(s) 785
AccII CGCG 2 cut(s) 48, 63
AccIII TCCGGA 1 cut(s) 1178
AciI CCGC 4 cut(s) 46, 84, 215, 265
AclWI GGATC 3 cut(s) 143, 880, 1006
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 3 cut(s) 408, 1131, 1220
AcyI GRCGYC 2 cut(s) 78, 218
AfaI GTAC 3 cut(s) 206, 820, 951
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 3 cut(s) 214, 785, 913
AflIII ACRYGT 2 cut(s) 180, 1144
AgsI TTSAA 9 cut(s) 283, 296, 601, 752, 848, 860, 870, 913, 1211
AjnI CCWGG 3 cut(s) 90, 888, 1054
AleI CACNNNNGTG 1 cut(s) 1033
AloI GAACNNNNNNTCC 2 cut(s) 1173, 1205
AluBI AGCT 9 cut(s) 115, 177, 640, 791, 851, 899, 1109, 1136, 1229
AluI AGCT 9 cut(s) 115, 177, 640, 791, 851, 899, 1109, 1136, 1229
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 2 cut(s) 19, 85
Alw44I GTGCAC 1 cut(s) 158
AlwI GGATC 3 cut(s) 143, 880, 1006
Ama87I CYCGRG 2 cut(s) 16, 629
Aor13HI TCCGGA 1 cut(s) 1178
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 6 cut(s) 43, 93, 449, 459, 696, 741
ApaLI GTGCAC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 719
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
Asp718I GGTACC 1 cut(s) 949
AspLEI GCGC 3 cut(s) 63, 102, 486
AspS9I GGNCC 2 cut(s) 450, 742
AsuC2I CCSGG 1 cut(s) 745
AsuHPI GGTGA 3 cut(s) 100, 1082, 1252
AvaI CYCGRG 2 cut(s) 16, 629
BaeGI GKGCMC 1 cut(s) 162
BanI GGYRCC 1 cut(s) 949
BbsI GAAGAC 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 226
BccI CCATC 4 cut(s) 205, 355, 427, 779
BceAI ACGGC 2 cut(s) 71, 446
BciT130I CCWGG 3 cut(s) 92, 890, 1056
BciVI GTATCC 2 cut(s) 489, 1214
BcnI CCSGG 1 cut(s) 745
BcoDI GTCTC 2 cut(s) 19, 85
BfaI CTAG 2 cut(s) 32, 222
BfmI CTRYAG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 103
BfuAI ACCTGC 1 cut(s) 814
BfuI GTATCC 2 cut(s) 489, 1214
BglI GCCNNNNNGGC 1 cut(s) 92
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 3 cut(s) 46, 216, 240
BlsI GCNGC 3 cut(s) 47, 217, 241
Bme1390I CCNGG 4 cut(s) 92, 745, 890, 1056
BmeT110I CYCGRG 2 cut(s) 16, 629
BmgT120I GGNCC 2 cut(s) 450, 742
BmiI GGNNCC 2 cut(s) 452, 951
BmrFI CCNGG 4 cut(s) 92, 745, 890, 1056
BmsI GCATC 4 cut(s) 124, 412, 955, 1015
BpiI GAAGAC 1 cut(s) 717
Bpu10I CCTNAGC 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 745
BsaAI YACGTR 1 cut(s) 1145
BsaHI GRCGYC 2 cut(s) 78, 218
BsaJI CCNNGG 2 cut(s) 1235, 1254
BsaWI WCCGGW 2 cut(s) 151, 1178
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 785, 913
Bse1I ACTGG 1 cut(s) 907
Bse3DI GCAATG 2 cut(s) 241, 568
BseAI TCCGGA 1 cut(s) 1178
BseBI CCWGG 3 cut(s) 92, 890, 1056
BseDI CCNNGG 2 cut(s) 1235, 1254
BseGI GGATG 2 cut(s) 358, 438
BseLI CCNNNNNNNGG 3 cut(s) 214, 785, 913
BseMI GCAATG 2 cut(s) 241, 568
BseMII CTCAG 2 cut(s) 392, 806
BseNI ACTGG 1 cut(s) 907
BseSI GKGCMC 1 cut(s) 162
BseXI GCAGC 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 640
BsgI GTGCAG 1 cut(s) 245
Bsh1236I CGCG 2 cut(s) 48, 63
BshFI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
BshNI GGYRCC 1 cut(s) 949
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 2 cut(s) 16, 629
BsiSI CCGG 3 cut(s) 152, 745, 1179
BslI CCNNNNNNNGG 3 cut(s) 214, 785, 913
BsmAI GTCTC 2 cut(s) 19, 85
BsmBI CGTCTC 1 cut(s) 85
BsmI GAATGC 2 cut(s) 246, 865
BsnI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
BsoBI CYCGRG 2 cut(s) 16, 629
Bsp1286I GDGCHC 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 1178
Bsp143I GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
Bsp19I CCATGG 2 cut(s) 1235, 1254
BspACI CCGC 4 cut(s) 46, 84, 215, 265
BspANI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
BspCNI CTCAG 2 cut(s) 391, 807
BspEI TCCGGA 1 cut(s) 1178
BspFNI CGCG 2 cut(s) 48, 63
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 452, 951
BspMI ACCTGC 1 cut(s) 814
BspPI GGATC 3 cut(s) 143, 880, 1006
BspQI GCTCTTC 1 cut(s) 1236
BspT107I GGYRCC 1 cut(s) 949
BsrDI GCAATG 2 cut(s) 241, 568
BsrI ACTGG 1 cut(s) 907
BssECI CCNNGG 2 cut(s) 1235, 1254
BssMI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
BssNI GRCGYC 2 cut(s) 78, 218
BssT1I CCWWGG 2 cut(s) 1235, 1254
Bst2UI CCWGG 3 cut(s) 92, 890, 1056
Bst4CI ACNGT 1 cut(s) 1174
Bst6I CTCTTC 4 cut(s) 257, 291, 300, 1236
BstACI GRCGYC 2 cut(s) 78, 218
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBAI YACGTR 1 cut(s) 1145
BstC8I GCNNGC 2 cut(s) 244, 1261
BstDEI CTNAG 3 cut(s) 317, 378, 815
BstDSI CCRYGG 2 cut(s) 1235, 1254
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 2 cut(s) 358, 438
BstFNI CGCG 2 cut(s) 48, 63
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 3 cut(s) 63, 102, 486
BstKTI GATC 6 cut(s) 151, 760, 799, 888, 1001, 1049
BstMAI GTCTC 2 cut(s) 19, 85
BstMBI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
BstMWI GCNNNNNNNGC 3 cut(s) 92, 1010, 1115
BstNI CCWGG 3 cut(s) 92, 890, 1056
BstNSI RCATGY 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 4 cut(s) 90, 743, 888, 1054
BstSFI CTRYAG 1 cut(s) 188
BstSLI GKGCMC 1 cut(s) 162
BstUI CGCG 2 cut(s) 48, 63
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 3 cut(s) 885, 998, 1046
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 3 cut(s) 885, 998, 1046
BsuI GTATCC 2 cut(s) 489, 1214
BsuRI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
BtgI CCRYGG 2 cut(s) 1235, 1254
BtsCI GGATG 2 cut(s) 358, 438
BtsI GCAGTG 3 cut(s) 480, 493, 924
BtsIMutI CAGTG 4 cut(s) 480, 493, 734, 924
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 2 cut(s) 244, 1261
CciI TCATGA 1 cut(s) 801
CfoI GCGC 3 cut(s) 63, 102, 486
Cfr13I GGNCC 2 cut(s) 450, 742
CseI GACGC 1 cut(s) 207
Csp6I GTAC 3 cut(s) 205, 819, 950
CviAII CATG 4 cut(s) 181, 802, 1236, 1255
CviQI GTAC 3 cut(s) 205, 819, 950
DdeI CTNAG 3 cut(s) 317, 378, 815
DpnI GATC 6 cut(s) 150, 759, 798, 887, 1000, 1048
DpnII GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 4 cut(s) 257, 291, 300, 1236
EarI CTCTTC 4 cut(s) 257, 291, 300, 1236
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 1235, 1254
Eco47III AGCGCT 1 cut(s) 101
Eco57I CTGAAG 3 cut(s) 408, 1131, 1220
Eco88I CYCGRG 2 cut(s) 16, 629
Eco91I GGTNACC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 450
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 90, 888, 1054
EcoT14I CCWWGG 2 cut(s) 1235, 1254
ErhI CCWWGG 2 cut(s) 1235, 1254
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 4 cut(s) 184, 805, 1239, 1258
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 4 cut(s) 180, 801, 1235, 1254
FauNDI CATATG 1 cut(s) 1009
Fnu4HI GCNGC 3 cut(s) 46, 216, 240
FokI GGATG 2 cut(s) 365, 445
Fsp4HI GCNGC 3 cut(s) 46, 216, 240
FspBI CTAG 2 cut(s) 32, 222
GlaI GCGC 3 cut(s) 62, 101, 485
GluI GCNGC 3 cut(s) 46, 216, 240
GsaI CCCAGC 1 cut(s) 644
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
HapII CCGG 3 cut(s) 152, 745, 1179
HgaI GACGC 1 cut(s) 207
HhaI GCGC 3 cut(s) 63, 102, 486
Hin1I GRCGYC 2 cut(s) 78, 218
Hin1II CATG 4 cut(s) 184, 805, 1239, 1258
Hin6I GCGC 3 cut(s) 61, 100, 484
HinP1I GCGC 3 cut(s) 61, 100, 484
HincII GTYRAC 2 cut(s) 442, 556
HindII GTYRAC 2 cut(s) 442, 556
HinfI GANTC 2 cut(s) 140, 311
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 3 cut(s) 152, 745, 1179
HphI GGTGA 3 cut(s) 100, 1082, 1252
Hpy166II GTNNAC 5 cut(s) 160, 205, 384, 442, 556
Hpy188I TCNGA 3 cut(s) 583, 762, 987
Hpy188III TCNNGA 5 cut(s) 121, 415, 802, 1124, 1179
Hpy8I GTNNAC 5 cut(s) 160, 205, 384, 442, 556
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 485, 781, 1103
HpyCH4III ACNGT 1 cut(s) 1174
HpyCH4IV ACGT 3 cut(s) 78, 499, 1144
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 1010, 1115
HpyF3I CTNAG 3 cut(s) 317, 378, 815
HpySE526I ACGT 3 cut(s) 78, 499, 1144
Hsp92I GRCGYC 2 cut(s) 78, 218
Hsp92II CATG 4 cut(s) 184, 805, 1239, 1258
HspAI GCGC 3 cut(s) 61, 100, 484
Kpn2I TCCGGA 1 cut(s) 1178
KpnI GGTACC 1 cut(s) 953
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
LguI GCTCTTC 1 cut(s) 1236
LmnI GCTCC 3 cut(s) 788, 916, 1141
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 4 cut(s) 124, 412, 955, 1015
MaeI CTAG 2 cut(s) 32, 222
MaeII ACGT 3 cut(s) 78, 499, 1144
MaeIII GTNAC 6 cut(s) 141, 371, 463, 500, 1102, 1193
MalI GATC 6 cut(s) 150, 759, 798, 887, 1000, 1048
MboI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
MflI RGATCY 3 cut(s) 885, 998, 1046
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 4 cut(s) 719, 837, 855, 1271
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 9 cut(s) 38, 121, 301, 387, 441, 508, 661, 843, 940
MroI TCCGGA 1 cut(s) 1178
MseI TTAA 5 cut(s) 401, 441, 543, 647, 1274
MslI CAYNNNNRTG 5 cut(s) 165, 198, 729, 1033, 1253
MspA1I CMGCKG 1 cut(s) 1109
MspI CCGG 3 cut(s) 152, 745, 1179
MspR9I CCNGG 4 cut(s) 92, 745, 890, 1056
Mva1269I GAATGC 2 cut(s) 246, 865
MvaI CCWGG 3 cut(s) 92, 890, 1056
MvnI CGCG 2 cut(s) 48, 63
MwoI GCNNNNNNNGC 3 cut(s) 92, 1010, 1115
NciI CCSGG 1 cut(s) 745
NcoI CCATGG 2 cut(s) 1235, 1254
NdeI CATATG 1 cut(s) 1009
NdeII GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
NlaIII CATG 4 cut(s) 184, 805, 1239, 1258
NlaIV GGNNCC 2 cut(s) 452, 951
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 141
NspI RCATGY 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 1033
PagI TCATGA 1 cut(s) 801
PciI ACATGT 1 cut(s) 180
PciSI GCTCTTC 1 cut(s) 1236
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 168
PctI GAATGC 2 cut(s) 246, 865
PfeI GAWTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 785
PkrI GCNGC 3 cut(s) 47, 217, 241
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 1145
PscI ACATGT 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 90, 888, 1054
PspEI GGTNACC 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 90, 888, 1054
PspN4I GGNNCC 2 cut(s) 452, 951
PspPI GGNCC 2 cut(s) 450, 742
PsuI RGATCY 3 cut(s) 885, 998, 1046
PvuII CAGCTG 1 cut(s) 1109
RsaI GTAC 3 cut(s) 206, 820, 951
RsaNI GTAC 3 cut(s) 205, 819, 950
RseI CAYNNNNRTG 5 cut(s) 165, 198, 729, 1033, 1253
SapI GCTCTTC 1 cut(s) 1236
SaqAI TTAA 5 cut(s) 401, 441, 543, 647, 1274
SatI GCNGC 3 cut(s) 46, 216, 240
Sau3AI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
Sau96I GGNCC 2 cut(s) 450, 742
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 92, 745, 890, 1056
SduI GDGCHC 1 cut(s) 162
SfaNI GCATC 4 cut(s) 124, 412, 955, 1015
SfcI CTRYAG 1 cut(s) 188
SmiMI CAYNNNNRTG 5 cut(s) 165, 198, 729, 1033, 1253
Sse9I AATT 4 cut(s) 719, 837, 855, 1271
SsiI CCGC 4 cut(s) 46, 84, 215, 265
SspI AATATT 1 cut(s) 982
SspMI CTAG 2 cut(s) 32, 222
StyD4I CCNGG 4 cut(s) 90, 743, 888, 1054
StyI CCWWGG 2 cut(s) 1235, 1254
TaaI ACNGT 1 cut(s) 1174
TaiI ACGT 3 cut(s) 81, 502, 1147
TaqI TCGA 2 cut(s) 120, 901
TasI AATT 4 cut(s) 719, 837, 855, 1271
TauI GCSGC 2 cut(s) 48, 218
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 5 cut(s) 401, 441, 543, 647, 1274
Tru9I TTAA 5 cut(s) 401, 441, 543, 647, 1274
TscAI CASTG 4 cut(s) 480, 493, 734, 931
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 369, 713, 1284
TspRI CASTG 4 cut(s) 480, 493, 734, 931
Van91I CCANNNNNTGG 1 cut(s) 785
VneI GTGCAC 1 cut(s) 158
XapI RAATTY 1 cut(s) 719
XceI RCATGY 1 cut(s) 184
XspI CTAG 2 cut(s) 32, 222
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.