Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004476

Physical Location & Seq

Genomic Coordinates Forward (+)

10469161 .. 10475404

Gene Structure 6244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATGGTGTATGCTAATGAGGCCTTGTGTGCTCGACAGTATGAGTTGCTCGATGAAATTATGGACTTTGGTTTCCCGCAATACACTGAAGCAAAGATCCTCAGTGAGTTTATCAAGACGGATGCCTACAGGATGGAGGTTACGCAACGTCCTCCCATGGCAGTCACAAATGCAGTGTCTTGGCGCAGTGAAGGGTTACGATATAAGAAGAACGAAGTCTTCCTGGATGTGGTAGAAAGTGTCAACATACTTGTCAATAGCAATGGACAAATAATACGGTCAGATGTTGTTGGGGCCCTAAAGATGAGAACATATTTGAGTGGTATGCCCGAGTGTAAGCTTGGACTAAATGATAGAGTTCTGCTGGAGGCTCAAGGTCGAACAACAAAAGGAAAAGCCATTGATCTGGATGATATCAAGTTCCATCAGTGTGTACGTTTGGCTCGTTTTGAAAATGACCGCACTATTTCCTTCATACCCCCTGATGGAGCATTTGATTTGATGACATATAGACTCAGTACTCAGGTGAAGCCTCTTATCTGGGTGGAAGCACAAGTTGAAAAGCATTCTAGAAGTCGTATTGAATTCACGGTAAAAGCAAGGAGCCAGTATAAGGAGCGGAGCACGGCTACACATGTTGAAATTGATTTGCCTGTTCCTGCTGATGCTACCAATCCTAGTGTCCGCACGTCAATGGGATCTGCTGCATATGCTCCTGAGAGGGATGCCTTAGTCTGGAAAATCAAATCTTTTCCTGGTAATAAGGAGTATATGTTGAGGGCTGAGTTTAGGCTTCCTAGTATTATCGCTGAAGATGCAGTTCCGGAAAGAAAAGCTCCCATTCGTGTGAAGTTTGAGATACCATATTTTACAGTCTCAGGAATTCAGGTCCGGTACCTAAAAATCATTGAGAAAAGTGGATATCAGGCTCTTCCATGGGTGAGATACATAACAATGGCTGGCGAATATGAACTGAGACTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002478 GO:0002495 GO:0002504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006955 GO:0006996 GO:0008150 GO:0009605 GO:0009987 GO:0012505 GO:0012506 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0019882 GO:0019884 GO:0019886 GO:0021700 GO:0030135 GO:0030136 GO:0030141 GO:0030154 GO:0030659 GO:0030662 GO:0030665 GO:0030667 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032438 GO:0032502 GO:0032588 GO:0032940 GO:0033059 GO:0035579 GO:0035646 GO:0036230 GO:0042119 GO:0042581 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0043473 GO:0043476 GO:0043482 GO:0043485 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0046907 GO:0048002 GO:0048066 GO:0048753 GO:0048757 GO:0048869 GO:0050690 GO:0050896 GO:0050931 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098852 GO:0099503

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

328

Amino Acids

37.61

Weight (kDa)

8.76

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Adap_comp_sub	PF00928	59 - 326	1.2e-94	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10730 AT1G60780
fragaria_vesca	FvH4_4g25870 FvH4_4g25870 FvH4_5g05940 FvH4_5g05940
malus_domestica	MD06G1169300.v1.1 MD13G1097400.v1.1 MD14G1174600.v1.1 MD16G1098500.v1.1
prunus_persica	Prupe.1G248000_v2.0.a1 Prupe.1G248000_v2.0.a1 Prupe.5G168100_v2.0.a1
pyrus_communis	pycom06g15080 pycom14g14570 pycom16g08380
rosa_chinensis	RchiOBHm_Chr4g0433301 RchiOBHm_Chr7g0192901
rosa_laevigata	RLG00000004314 RLG00000006765
rosa_multiflora	Rmu_sc0000354.1_g000005 Rmu_sc0002040.1_g000054
rosa_roxburghii	Rroxscaffold_3G00262560 Rroxscaffold_5G00374860
rosa_rugosa	Rorug04G0267900 Rorug07G0005500
rosa_samantha	Rh4BG329900 Rh4CG345300 Rh4DG326600 Rh7AG131200
rosa_wichuraiana	Rw4G027900 Rw7G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	894
AccB1I	GGYRCC	1 cut(s)	894
AccBSI	CCGCTC	1 cut(s)	619
AccIII	TCCGGA	1 cut(s)	823
AciI	CCGC	4 cut(s)	77, 460, 619, 685
AclWI	GGATC	2 cut(s)	91, 706
AcsI	RAATTY	2 cut(s)	584, 882
AcuI	CTGAAG	2 cut(s)	108, 831
AfaI	GTAC	3 cut(s)	435, 520, 896
AfiI	CCNNNNNNNGG	4 cut(s)	229, 485, 613, 735
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	4 cut(s)	452, 560, 584, 641
AjiI	CACGTC	1 cut(s)	690
AjnI	CCWGG	2 cut(s)	222, 754
AluBI	AGCT	2 cut(s)	340, 836
AluI	AGCT	2 cut(s)	340, 836
Alw21I	GWGCWC	2 cut(s)	34, 626
Alw26I	GTCTC	2 cut(s)	880, 970
AlwI	GGATC	2 cut(s)	91, 706
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	823
AoxI	GGCC	2 cut(s)	21, 294
ApaI	GGGCCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	2 cut(s)	584, 882
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
Asp718I	GGTACC	1 cut(s)	894
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	3 cut(s)	294, 295, 889
AsuHPI	GGTGA	2 cut(s)	538, 952
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	889
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	894
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	2 cut(s)	34, 626
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	3 cut(s)	127, 432, 479
BceAI	ACGGC	1 cut(s)	642
BciT130I	CCWGG	2 cut(s)	224, 756
BcoDI	GTCTC	2 cut(s)	880, 970
BfaI	CTAG	3 cut(s)	570, 678, 798
BfmI	CTRYAG	1 cut(s)	127
BisI	GCNGC	1 cut(s)	705
BlsI	GCNGC	1 cut(s)	706
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	2 cut(s)	224, 756
Bme18I	GGWCC	1 cut(s)	889
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	690
BmgT120I	GGNCC	3 cut(s)	294, 295, 889
BmiI	GGNNCC	4 cut(s)	295, 296, 605, 896
BmrFI	CCNGG	2 cut(s)	224, 756
BmsI	GCATC	4 cut(s)	112, 655, 715, 805
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	156, 935
BsaWI	WCCGGW	2 cut(s)	823, 891
BsaXI	ACNNNNNCTCC	2 cut(s)	758, 788
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 485, 613, 735
Bse1I	ACTGG	1 cut(s)	607
Bse3DI	GCAATG	1 cut(s)	268
BseAI	TCCGGA	1 cut(s)	823
BseBI	CCWGG	2 cut(s)	224, 756
BseDI	CCNNGG	2 cut(s)	156, 935
BseGI	GGATG	5 cut(s)	127, 138, 232, 415, 730
BseLI	CCNNNNNNNGG	4 cut(s)	229, 485, 613, 735
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	7 cut(s)	115, 529, 536, 708, 774, 891, 965
BseNI	ACTGG	1 cut(s)	607
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	691
BshFI	GGCC	2 cut(s)	23, 296
BshNI	GGYRCC	1 cut(s)	894
BsiHKAI	GWGCWC	2 cut(s)	34, 626
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	824, 892
BslI	CCNNNNNNNGG	4 cut(s)	229, 485, 613, 735
BsmAI	GTCTC	2 cut(s)	880, 970
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	2 cut(s)	23, 296
BsoBI	CYCGRG	1 cut(s)	329
Bsp120I	GGGCCC	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	34, 298, 626
Bsp13I	TCCGGA	1 cut(s)	823
Bsp143I	GATC	3 cut(s)	96, 403, 698
Bsp19I	CCATGG	2 cut(s)	156, 935
BspACI	CCGC	4 cut(s)	77, 460, 619, 685
BspANI	GGCC	2 cut(s)	23, 296
BspCNI	CTCAG	7 cut(s)	114, 528, 535, 709, 775, 890, 966
BspEI	TCCGGA	1 cut(s)	823
BspLI	GGNNCC	4 cut(s)	295, 296, 605, 896
BspPI	GGATC	2 cut(s)	91, 706
BspQI	GCTCTTC	1 cut(s)	936
BspT107I	GGYRCC	1 cut(s)	894
BsrBI	CCGCTC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	156, 935
BssMI	GATC	3 cut(s)	96, 403, 698
BssT1I	CCWWGG	2 cut(s)	156, 935
Bst2UI	CCWGG	2 cut(s)	224, 756
Bst4CI	ACNGT	4 cut(s)	39, 279, 592, 874
Bst6I	CTCTTC	1 cut(s)	936
BstC8I	GCNNGC	1 cut(s)	961
BstDEI	CTNAG	8 cut(s)	101, 515, 522, 717, 730, 783, 877, 974
BstDSI	CCRYGG	2 cut(s)	156, 935
BstF5I	GGATG	5 cut(s)	127, 138, 232, 415, 730
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	3 cut(s)	99, 406, 701
BstMAI	GTCTC	2 cut(s)	880, 970
BstMBI	GATC	3 cut(s)	96, 403, 698
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 29, 710, 815
BstNI	CCWGG	2 cut(s)	224, 756
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	222, 754
BstSFI	CTRYAG	1 cut(s)	127
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	691
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	96, 698
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	2 cut(s)	96, 698
BsuRI	GGCC	2 cut(s)	23, 296
BtgI	CCRYGG	2 cut(s)	156, 935
BtrI	CACGTC	1 cut(s)	690
BtsCI	GGATG	5 cut(s)	127, 138, 232, 415, 730
BtsI	GCAGTG	2 cut(s)	180, 193
BtsIMutI	CAGTG	5 cut(s)	84, 109, 180, 193, 434
Cac8I	GCNNGC	1 cut(s)	961
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	294, 295, 889
Csp6I	GTAC	3 cut(s)	434, 519, 895
CviAII	CATG	3 cut(s)	157, 635, 936
CviQI	GTAC	3 cut(s)	434, 519, 895
DdeI	CTNAG	8 cut(s)	101, 515, 522, 717, 730, 783, 877, 974
DpnI	GATC	3 cut(s)	98, 405, 700
DpnII	GATC	3 cut(s)	96, 403, 698
Eam1104I	CTCTTC	1 cut(s)	936
EarI	CTCTTC	1 cut(s)	936
Eco130I	CCWWGG	2 cut(s)	156, 935
Eco147I	AGGCCT	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	298
Eco32I	GATATC	2 cut(s)	415, 923
Eco47I	GGWCC	1 cut(s)	889
Eco57I	CTGAAG	2 cut(s)	108, 831
Eco88I	CYCGRG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	294, 295
EcoRI	GAATTC	2 cut(s)	584, 882
EcoRII	CCWGG	2 cut(s)	222, 754
EcoRV	GATATC	2 cut(s)	415, 923
EcoT14I	CCWWGG	2 cut(s)	156, 935
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	156, 935
FaeI	CATG	3 cut(s)	160, 638, 939
FatI	CATG	3 cut(s)	156, 634, 935
FauI	CCCGC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	1 cut(s)	705
FokI	GGATG	5 cut(s)	134, 145, 239, 422, 737
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	705
FspBI	CTAG	3 cut(s)	570, 678, 798
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	1 cut(s)	705
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	23, 296
HapII	CCGG	2 cut(s)	824, 892
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	160, 638, 939
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	2 cut(s)	824, 892
HphI	GGTGA	2 cut(s)	538, 952
Hpy166II	GTNNAC	2 cut(s)	244, 434
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	7 cut(s)	115, 407, 570, 716, 736, 824, 879
Hpy8I	GTNNAC	2 cut(s)	244, 434
HpyAV	CCTTC	2 cut(s)	185, 481
HpyCH4III	ACNGT	4 cut(s)	39, 279, 592, 874
HpyCH4IV	ACGT	3 cut(s)	148, 436, 689
HpyCH4V	TGCA	3 cut(s)	173, 707, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 29, 710, 815
HpyF3I	CTNAG	8 cut(s)	101, 515, 522, 717, 730, 783, 877, 974
HpySE526I	ACGT	3 cut(s)	148, 436, 689
Hsp92II	CATG	3 cut(s)	160, 638, 939
HspAI	GCGC	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	823
KpnI	GGTACC	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	96, 403, 698
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	6 cut(s)	488, 603, 616, 621, 718, 841
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	4 cut(s)	112, 655, 715, 805
MaeI	CTAG	3 cut(s)	570, 678, 798
MaeII	ACGT	3 cut(s)	148, 436, 689
MaeIII	GTNAC	3 cut(s)	139, 163, 195
MalI	GATC	3 cut(s)	98, 405, 700
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	3 cut(s)	96, 403, 698
MboII	GAAGA	4 cut(s)	211, 220, 824, 923
MflI	RGATCY	2 cut(s)	96, 698
MhlI	GDGCHC	3 cut(s)	34, 298, 626
MluCI	AATT	4 cut(s)	57, 584, 642, 882
MlyI	GAGTC	1 cut(s)	507
MnlI	CCTC	8 cut(s)	13, 110, 130, 162, 361, 543, 714, 771
MroI	TCCGGA	1 cut(s)	823
MslI	CAYNNNNRTG	4 cut(s)	429, 692, 845, 953
MspI	CCGG	2 cut(s)	824, 892
MspR9I	CCNGG	2 cut(s)	224, 756
Mva1269I	GAATGC	1 cut(s)	565
MvaI	CCWGG	2 cut(s)	224, 756
MwoI	GCNNNNNNNGC	4 cut(s)	20, 29, 710, 815
NcoI	CCATGG	2 cut(s)	156, 935
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	3 cut(s)	96, 403, 698
NlaIII	CATG	3 cut(s)	160, 638, 939
NlaIV	GGNNCC	4 cut(s)	295, 296, 605, 896
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	638
PceI	AGGCCT	1 cut(s)	23
PciI	ACATGT	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PctI	GAATGC	1 cut(s)	565
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	706
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PscI	ACATGT	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	222, 754
PspGI	CCWGG	2 cut(s)	222, 754
PspN4I	GGNNCC	4 cut(s)	295, 296, 605, 896
PspOMI	GGGCCC	1 cut(s)	294
PspPI	GGNCC	3 cut(s)	294, 295, 889
PsuI	RGATCY	2 cut(s)	96, 698
RsaI	GTAC	3 cut(s)	435, 520, 896
RsaNI	GTAC	3 cut(s)	434, 519, 895
RseI	CAYNNNNRTG	4 cut(s)	429, 692, 845, 953
SapI	GCTCTTC	1 cut(s)	936
SatI	GCNGC	1 cut(s)	705
Sau3AI	GATC	3 cut(s)	96, 403, 698
Sau96I	GGNCC	3 cut(s)	294, 295, 889
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	224, 756
SduI	GDGCHC	3 cut(s)	34, 298, 626
SfaNI	GCATC	4 cut(s)	112, 655, 715, 805
SfcI	CTRYAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	889
SmiMI	CAYNNNNRTG	4 cut(s)	429, 692, 845, 953
SmlI	CTYRAG	1 cut(s)	372
SmoI	CTYRAG	1 cut(s)	372
Sse9I	AATT	4 cut(s)	57, 584, 642, 882
SseBI	AGGCCT	1 cut(s)	23
SsiI	CCGC	4 cut(s)	77, 460, 619, 685
SspMI	CTAG	3 cut(s)	570, 678, 798
StuI	AGGCCT	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	222, 754
StyI	CCWWGG	2 cut(s)	156, 935
TaaI	ACNGT	4 cut(s)	39, 279, 592, 874
TaiI	ACGT	3 cut(s)	151, 439, 692
TaqI	TCGA	3 cut(s)	34, 51, 379
TasI	AATT	4 cut(s)	57, 584, 642, 882
TatI	WGTACW	1 cut(s)	518
TscAI	CASTG	5 cut(s)	91, 109, 180, 193, 434
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	69, 463, 984
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	5 cut(s)	91, 109, 180, 193, 434
VpaK11BI	GGWCC	1 cut(s)	889
XapI	RAATTY	2 cut(s)	584, 882
XbaI	TCTAGA	1 cut(s)	569
XceI	RCATGY	1 cut(s)	638
XspI	CTAG	3 cut(s)	570, 678, 798
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.