Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004476

Physical Location & Seq

Genomic Coordinates Reverse (-)

60453713 .. 60458796

Gene Structure 5084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCAGGGGCAGTCTCGGGGCTGTTCCTCCTAGACATCAAAGGCCGCGTTCTCATCTGGCGCGACTATCGTGGCGACGTCTCCGCCGTCCAGGCCGAGCGCTTCTTCACCAAGCTCATCGAGAAAGAGGTTGATGCAGAGTCACACGATCCCGTTGTGCACGATAATGGCGTAAGCTACATGTTTCTACAGCATAACAATGTGTACCTGATGGCGGCGTCTAGGCAGAACTGCAATGCTGCCAGCATTCTCTTCTTTCTGCACCGCATTGTTGATGTGTTCAAGCATTATTTTGAAGAGTTAGAAGAGGAATCGCTTAGGGATAATTTTGTGGTTGTGTATGAGTTGCTGGATGAAATGATGGACTTCGGTTACCCTCAGTTCACTGAAGCGAAGATTTTAAGTGAGTTTATCAAGACTGATGCTTACAGGATGGAAGTTAACCAGAGGCCCCCGATGGCCGTAACAAATGCAGTGTCTTGGCGCAGTGAAGGGATACGTTACAAGAAGAATGAGGTTTTCCTTGATGTAGTGGAGAGCGTTAATATACTCGTCAACAGCAATGGTCAAATCATTAGGTCTGATGTTGTTGGTGCTTTGAAGATGAGAACTTATTTGAGTGGTATGCCCGAGTGTAAGCTGGGCTTAAATGATAGAGTGCTATTGGAGGCACAAGGCAGAACAACAAAGGGAAAGGCCATTGATTTGGAAGACATCAAATTTCATCAGTGTGTGCGTTTGGCCCGGTTTGAAAATGATCGGACAATATCCTTCGTTCCACCTGATGGAGCTTTTGATCTCATGACTTATAGACTGAGTACGCAGGTCAAACCTCTAATTTGGGTTGAAGCTCAAATTGAAAGGCATTCAAAAAGTCGCATCGAGATCTTGGTAAAAGCTCGAAGCCAGTTCAAGGAGCGTAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002119 GO:0002164 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009792 GO:0009987 GO:0012505 GO:0012506 GO:0012510 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030117 GO:0030118 GO:0030119 GO:0030120 GO:0030121 GO:0030125 GO:0030130 GO:0030131 GO:0030133 GO:0030135 GO:0030136 GO:0030140 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0040025 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0044782 GO:0045176 GO:0045184 GO:0046907 GO:0048475 GO:0048513 GO:0048569 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060271 GO:0061512 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071840 GO:0072657 GO:0097499 GO:0097500 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0120031 GO:0120036 GO:1903441 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

309

Amino Acids

35.79

Weight (kDa)

6.21

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clat_adaptor_s	PF01217	7 - 127	2.9e-07	Clathrin adaptor complex small chain
Adap_comp_sub	PF00928	159 - 306	8.2e-53	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10730 AT1G60780
fragaria_vesca	FvH4_4g25870 FvH4_4g25870 FvH4_5g05940 FvH4_5g05940
malus_domestica	MD06G1169300.v1.1 MD13G1097400.v1.1 MD14G1174600.v1.1 MD16G1098500.v1.1
prunus_persica	Prupe.1G248000_v2.0.a1 Prupe.1G248000_v2.0.a1 Prupe.5G168100_v2.0.a1
pyrus_communis	pycom06g15080 pycom14g14570 pycom16g08380
rosa_chinensis	RchiOBHm_Chr4g0433301 RchiOBHm_Chr7g0192901
rosa_laevigata	RLG00000004314 RLG00000006765
rosa_multiflora	Rmu_sc0000354.1_g000005 Rmu_sc0002040.1_g000054
rosa_roxburghii	Rroxscaffold_3G00262560 Rroxscaffold_5G00374860
rosa_rugosa	Rorug04G0267900 Rorug07G0005500
rosa_samantha	Rh4BG329900 Rh4CG345300 Rh4DG326600 Rh7AG131200
rosa_wichuraiana	Rw4G027900 Rw7G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	814
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccII	CGCG	2 cut(s)	48, 63
AciI	CCGC	4 cut(s)	46, 84, 215, 265
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	2 cut(s)	78, 218
AfaI	GTAC	2 cut(s)	206, 820
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	3 cut(s)	214, 785, 913
AflIII	ACRYGT	1 cut(s)	180
AgsI	TTSAA	8 cut(s)	283, 296, 601, 752, 848, 860, 870, 913
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	6 cut(s)	115, 177, 640, 791, 851, 899
AluI	AGCT	6 cut(s)	115, 177, 640, 791, 851, 899
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	19, 85
Alw44I	GTGCAC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	2 cut(s)	16, 629
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	6 cut(s)	43, 93, 449, 459, 696, 741
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	719
ArsI	GACNNNNNNTTYG	2 cut(s)	461, 493
AspLEI	GCGC	3 cut(s)	63, 102, 486
AspS9I	GGNCC	2 cut(s)	450, 742
AsuC2I	CCSGG	1 cut(s)	745
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	2 cut(s)	16, 629
BaeGI	GKGCMC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	5 cut(s)	205, 355, 427, 451, 779
BceAI	ACGGC	2 cut(s)	71, 446
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	19, 85
BfaI	CTAG	2 cut(s)	32, 222
BfmI	CTRYAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	103
BfuAI	ACCTGC	1 cut(s)	814
BfuI	GTATCC	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	885
BisI	GCNGC	3 cut(s)	46, 216, 240
BlsI	GCNGC	3 cut(s)	47, 217, 241
Bme1390I	CCNGG	2 cut(s)	92, 745
BmeT110I	CYCGRG	2 cut(s)	16, 629
BmgT120I	GGNCC	2 cut(s)	450, 742
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	2 cut(s)	92, 745
BmsI	GCATC	3 cut(s)	124, 412, 888
BpiI	GAAGAC	1 cut(s)	717
Bpu10I	CCTNAGC	1 cut(s)	317
BpuMI	CCSGG	1 cut(s)	745
BsaHI	GRCGYC	2 cut(s)	78, 218
BsaXI	ACNNNNNCTCC	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 785, 913
Bse1I	ACTGG	1 cut(s)	907
Bse3DI	GCAATG	2 cut(s)	241, 568
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	2 cut(s)	358, 438
BseLI	CCNNNNNNNGG	3 cut(s)	214, 785, 913
BseMI	GCAATG	2 cut(s)	241, 568
BseMII	CTCAG	2 cut(s)	392, 806
BseNI	ACTGG	1 cut(s)	907
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	226
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	245
Bsh1236I	CGCG	2 cut(s)	48, 63
BshFI	GGCC	6 cut(s)	45, 95, 451, 461, 698, 743
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	2 cut(s)	16, 629
BsiSI	CCGG	1 cut(s)	745
BslI	CCNNNNNNNGG	3 cut(s)	214, 785, 913
BsmAI	GTCTC	2 cut(s)	19, 85
BsmBI	CGTCTC	1 cut(s)	85
BsmI	GAATGC	2 cut(s)	246, 865
BsnI	GGCC	6 cut(s)	45, 95, 451, 461, 698, 743
BsoBI	CYCGRG	2 cut(s)	16, 629
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	4 cut(s)	148, 757, 796, 885
BspACI	CCGC	4 cut(s)	46, 84, 215, 265
BspANI	GGCC	6 cut(s)	45, 95, 451, 461, 698, 743
BspCNI	CTCAG	2 cut(s)	391, 807
BspFNI	CGCG	2 cut(s)	48, 63
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	1 cut(s)	452
BspMI	ACCTGC	1 cut(s)	814
BspPI	GGATC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	241, 568
BsrI	ACTGG	1 cut(s)	907
BssMI	GATC	4 cut(s)	148, 757, 796, 885
BssNI	GRCGYC	2 cut(s)	78, 218
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	3 cut(s)	257, 291, 300
BstACI	GRCGYC	2 cut(s)	78, 218
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	317, 378, 815
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	358, 438
BstFNI	CGCG	2 cut(s)	48, 63
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	3 cut(s)	63, 102, 486
BstKTI	GATC	4 cut(s)	151, 760, 799, 888
BstMAI	GTCTC	2 cut(s)	19, 85
BstMBI	GATC	4 cut(s)	148, 757, 796, 885
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	184
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	90, 743
BstSFI	CTRYAG	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	162
BstUI	CGCG	2 cut(s)	48, 63
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	717
BstX2I	RGATCY	1 cut(s)	885
BstXI	CCANNNNNNTGG	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	6 cut(s)	45, 95, 451, 461, 698, 743
BtsCI	GGATG	2 cut(s)	358, 438
BtsI	GCAGTG	2 cut(s)	480, 493
BtsIMutI	CAGTG	4 cut(s)	384, 480, 493, 734
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	1 cut(s)	244
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	3 cut(s)	63, 102, 486
Cfr13I	GGNCC	2 cut(s)	450, 742
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	205, 819
CviAII	CATG	2 cut(s)	181, 802
CviQI	GTAC	2 cut(s)	205, 819
DdeI	CTNAG	3 cut(s)	317, 378, 815
DpnI	GATC	4 cut(s)	150, 759, 798, 887
DpnII	GATC	4 cut(s)	148, 757, 796, 885
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	257, 291, 300
EarI	CTCTTC	3 cut(s)	257, 291, 300
EciI	GGCGGA	1 cut(s)	73
Eco47III	AGCGCT	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	16, 629
Eco91I	GGTNACC	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	450
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	2 cut(s)	184, 805
FaiI	YATR	7 cut(s)	182, 195, 342, 548, 626, 803, 810
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FatI	CATG	2 cut(s)	180, 801
Fnu4HI	GCNGC	3 cut(s)	46, 216, 240
FokI	GGATG	2 cut(s)	365, 445
Fsp4HI	GCNGC	3 cut(s)	46, 216, 240
FspBI	CTAG	2 cut(s)	32, 222
GlaI	GCGC	3 cut(s)	62, 101, 485
GluI	GCNGC	3 cut(s)	46, 216, 240
GsaI	CCCAGC	1 cut(s)	644
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	6 cut(s)	45, 95, 451, 461, 698, 743
HapII	CCGG	1 cut(s)	745
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	3 cut(s)	63, 102, 486
Hin1I	GRCGYC	2 cut(s)	78, 218
Hin1II	CATG	2 cut(s)	184, 805
Hin6I	GCGC	3 cut(s)	61, 100, 484
HinP1I	GCGC	3 cut(s)	61, 100, 484
HincII	GTYRAC	2 cut(s)	442, 556
HindII	GTYRAC	2 cut(s)	442, 556
HinfI	GANTC	2 cut(s)	140, 311
HpaI	GTTAAC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	745
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	5 cut(s)	160, 205, 384, 442, 556
Hpy188I	TCNGA	2 cut(s)	583, 762
Hpy188III	TCNNGA	4 cut(s)	121, 415, 802, 883
Hpy8I	GTNNAC	5 cut(s)	160, 205, 384, 442, 556
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	485, 781
HpyCH4IV	ACGT	2 cut(s)	78, 499
HpyCH4V	TGCA	5 cut(s)	137, 160, 234, 262, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	317, 378, 815
HpySE526I	ACGT	2 cut(s)	78, 499
Hsp92I	GRCGYC	2 cut(s)	78, 218
Hsp92II	CATG	2 cut(s)	184, 805
HspAI	GCGC	3 cut(s)	61, 100, 484
KspAI	GTTAAC	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	148, 757, 796, 885
LmnI	GCTCC	2 cut(s)	788, 916
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	3 cut(s)	124, 412, 888
MaeI	CTAG	2 cut(s)	32, 222
MaeII	ACGT	2 cut(s)	78, 499
MaeIII	GTNAC	4 cut(s)	141, 371, 463, 500
MalI	GATC	4 cut(s)	150, 759, 798, 887
MboI	GATC	4 cut(s)	148, 757, 796, 885
MboII	GAAGA	8 cut(s)	97, 244, 308, 317, 406, 520, 613, 722
MflI	RGATCY	1 cut(s)	885
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	4 cut(s)	325, 719, 837, 855
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	8 cut(s)	38, 121, 301, 387, 441, 508, 661, 843
MseI	TTAA	4 cut(s)	401, 441, 543, 647
MslI	CAYNNNNRTG	3 cut(s)	165, 198, 729
MspI	CCGG	1 cut(s)	745
MspR9I	CCNGG	2 cut(s)	92, 745
Mva1269I	GAATGC	2 cut(s)	246, 865
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	48, 63
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	1 cut(s)	745
NdeII	GATC	4 cut(s)	148, 757, 796, 885
NlaIII	CATG	2 cut(s)	184, 805
NlaIV	GGNNCC	1 cut(s)	452
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	184
PagI	TCATGA	1 cut(s)	801
PciI	ACATGT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 168
PctI	GAATGC	2 cut(s)	246, 865
PfeI	GAWTC	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	3 cut(s)	47, 217, 241
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	90
PspEI	GGTNACC	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	2 cut(s)	450, 742
PsuI	RGATCY	1 cut(s)	885
RsaI	GTAC	2 cut(s)	206, 820
RsaNI	GTAC	2 cut(s)	205, 819
RseI	CAYNNNNRTG	3 cut(s)	165, 198, 729
SaqAI	TTAA	4 cut(s)	401, 441, 543, 647
SatI	GCNGC	3 cut(s)	46, 216, 240
Sau3AI	GATC	4 cut(s)	148, 757, 796, 885
Sau96I	GGNCC	2 cut(s)	450, 742
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	92, 745
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	3 cut(s)	124, 412, 888
SfcI	CTRYAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	3 cut(s)	165, 198, 729
Sse9I	AATT	4 cut(s)	325, 719, 837, 855
SsiI	CCGC	4 cut(s)	46, 84, 215, 265
SspMI	CTAG	2 cut(s)	32, 222
StyD4I	CCNGG	2 cut(s)	90, 743
TaiI	ACGT	2 cut(s)	81, 502
TaqI	TCGA	3 cut(s)	120, 882, 901
TasI	AATT	4 cut(s)	325, 719, 837, 855
TauI	GCSGC	2 cut(s)	48, 218
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	4 cut(s)	401, 441, 543, 647
Tru9I	TTAA	4 cut(s)	401, 441, 543, 647
TscAI	CASTG	4 cut(s)	391, 480, 493, 734
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	2 cut(s)	369, 713
TspRI	CASTG	4 cut(s)	391, 480, 493, 734
Van91I	CCANNNNNTGG	1 cut(s)	785
VneI	GTGCAC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	2 cut(s)	32, 222
ZraI	GACGTC	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.