AT1G60780

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
22368953 .. 22372223
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60780.1

Sequence Viewer

Length: 1287 bp
ATGGCAGGAGCTGCCTCCGCGCTGTTTCTGCTTGATATCAAGGGACGCGTTCTCGTCTGGCGTGATTATCGTGGCGATGTCTCCGCTGCTCAAGCCGAGCGATTCTTCACTAAGCTCATCGAGAAAGAGGGTGATTCACAGTCAAATGATCCAGTTGCTTACGATAATGGGGTGACTTATATGTTTGTACAACATAGTAATGTATACTTGATGATAGCATCCAGGCAGAATTGTAATGCTGCCAGTCTTCTCTTCTTTCTTCACCGCGTTGTCGATGTTTTCAAGCATTACTTCGAGGAGTTAGAAGAGGAATCATTGAGGGATAACTTTGTGGTAGTGTATGAGCTACTTGACGAGATGATGGACTTTGGTTACCCTCAGTATACCGAAGCAAGAATTCTCAGTGAATTCATCAAGACTGATGCATATAGAATGGAAGTTACACAGAGACCTCCAATGGCTGTGACGAATGCTGTCTCCTGGAGGAGTGAGGGAATACAGTACAAGAAGAATGAAGTTTTCTTGGATGTTATTGAGAATGTAAATATTCTTGTCAACAGTAATGGGCAAATTGTCAGGTCTGATGTTGTTGGAGCGCTGAAGATGCGAACTTACTTGACTGGAATGCCAGAGTGTAAGTTAGGACTGAATGATAGAGTATTGCTGGAAGCGCAGGGACGAGCAACTAAGGGAAAAGCCATTGATTTGGAGGACATCAAATTTCATCAGTGTGTTCGATTGGCCCGTTTTGAAAACGATAGGACGATATCTTTCATACCACCTGATGGGGCTTTTGATCTGATGACATATAGACTCAGCACTCAGGTAAAGCCACTTATATGGGTGGAAGCACAAATAGAAAGTCATTCAAGAAGTCGTGTTGAGATGCTCATAAAAGCTAGAAGTCAGTTCAAGGAACGAAGCACCGCAACGAACGTTGAGATTGAGTTGCCTGTACCAACCGATGCATCTAACCCCACCGTTAGGACATCTCTAGGGTCTGCCTCTTATGCTCCTGAAAAAGATGCGTTAGTCTGGAAAATCAAATCTTTCCCGGGGAACAAGGAGTACATGTTAAGGGCAGAGTTCCATCTTCCAAGTATCACTGCAGAGGAAGCAACTCCTGAGCGAAAGGCTCCTATCCGTGTCAAATTTGAGATCCCTTATTTCACTGTTTCAGGGATTCAGGTTCGGTACCTAAAGATTATTGAGAAGAGTGGGTACCAAGCACTTCCATGGGTGAGATACATAACCATGGCTGGTGAGTACGAACTAAGACTCGTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

49.03

Weight (kDa)

6.01

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 7 - 128 7.9e-08 Clathrin adaptor complex small chain
Adap_comp_sub PF00928 159 - 426 6.1e-97 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 1194, 1221
AccB1I GGYRCC 2 cut(s) 1194, 1221
AccB7I CCANNNNNTGG 1 cut(s) 785
AccI GTMKAC 2 cut(s) 204, 383
AccII CGCG 3 cut(s) 20, 48, 267
AciI CCGC 4 cut(s) 18, 84, 265, 927
AclI AACGTT 1 cut(s) 936
AclWI GGATC 2 cut(s) 143, 1153
AcsI RAATTY 4 cut(s) 396, 407, 719, 1151
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 7 cut(s) 189, 503, 957, 1070, 1196, 1223, 1268
AfeI AGCGCT 1 cut(s) 597
AfiI CCNNNNNNNGG 2 cut(s) 785, 984
AflIII ACRYGT 2 cut(s) 46, 1071
AgsI TTSAA 4 cut(s) 283, 752, 870, 913
AjnI CCWGG 2 cut(s) 221, 479
AluBI AGCT 4 cut(s) 11, 115, 346, 899
AluI AGCT 4 cut(s) 11, 115, 346, 899
Alw26I GTCTC 3 cut(s) 85, 442, 481
AlwI GGATC 2 cut(s) 143, 1153
AlwNI CAGNNNCTG 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 1054
Aor51HI AGCGCT 1 cut(s) 597
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 3 cut(s) 11, 86, 239
ApoI RAATTY 4 cut(s) 396, 407, 719, 1151
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
Asp718I GGTACC 2 cut(s) 1194, 1221
AspLEI GCGC 3 cut(s) 22, 598, 673
AspS9I GGNCC 1 cut(s) 742
AsuC2I CCSGG 2 cut(s) 1055, 1056
AsuHPI GGTGA 5 cut(s) 143, 184, 254, 1252, 1274
AvaI CYCGRG 1 cut(s) 1054
BanI GGYRCC 2 cut(s) 1194, 1221
BarI GAAGNNNNNNTAC 2 cut(s) 1205, 1237
BauI CACGAG 1 cut(s) 1280
BbsI GAAGAC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 73, 226
BccI CCATC 3 cut(s) 355, 779, 1098
BciT130I CCWGG 2 cut(s) 223, 481
BcnI CCSGG 2 cut(s) 1055, 1056
BcoDI GTCTC 3 cut(s) 85, 442, 481
BfaI CTAG 2 cut(s) 900, 995
BfmI CTRYAG 1 cut(s) 1107
BfoI RGCGCY 1 cut(s) 599
BisI GCNGC 3 cut(s) 12, 87, 240
BlsI GCNGC 3 cut(s) 13, 88, 241
Bme1390I CCNGG 4 cut(s) 223, 481, 1055, 1056
BmeT110I CYCGRG 1 cut(s) 1054
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 3 cut(s) 1137, 1196, 1223
BmrFI CCNGG 4 cut(s) 223, 481, 1055, 1056
BmsI GCATC 7 cut(s) 227, 412, 594, 876, 955, 977, 1015
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 502
Bpu10I CCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 2 cut(s) 1055, 1056
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 4 cut(s) 1054, 1055, 1235, 1254
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 2 cut(s) 785, 984
Bse1I ACTGG 3 cut(s) 152, 243, 625
BseBI CCWGG 2 cut(s) 223, 481
BseDI CCNNGG 4 cut(s) 1054, 1055, 1235, 1254
BseGI GGATG 2 cut(s) 218, 532
BseLI CCNNNNNNNGG 2 cut(s) 785, 984
BseMII CTCAG 5 cut(s) 392, 415, 829, 836, 1116
BseNI ACTGG 3 cut(s) 152, 243, 625
BseRI GAGGAG 2 cut(s) 311, 499
BseXI GCAGC 2 cut(s) 73, 226
Bsh1236I CGCG 3 cut(s) 20, 48, 267
BshFI GGCC 1 cut(s) 743
BshNI GGYRCC 2 cut(s) 1194, 1221
BsiHKCI CYCGRG 1 cut(s) 1054
BsiSI CCGG 1 cut(s) 1055
BslFI GGGAC 2 cut(s) 57, 690
BslI CCNNNNNNNGG 2 cut(s) 785, 984
BsmAI GTCTC 3 cut(s) 85, 442, 481
BsmFI GGGAC 2 cut(s) 57, 690
BsmI GAATGC 2 cut(s) 475, 630
BsnI GGCC 1 cut(s) 743
Bso31I GGTCTC 1 cut(s) 442
BsoBI CYCGRG 1 cut(s) 1054
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 3 cut(s) 148, 796, 1158
Bsp19I CCATGG 2 cut(s) 1235, 1254
BspACI CCGC 4 cut(s) 18, 84, 265, 927
BspANI GGCC 1 cut(s) 743
BspCNI CTCAG 5 cut(s) 391, 414, 828, 835, 1117
BspFNI CGCG 3 cut(s) 20, 48, 267
BspLI GGNNCC 3 cut(s) 1137, 1196, 1223
BspMAI CTGCAG 1 cut(s) 1111
BspPI GGATC 2 cut(s) 143, 1153
BspT107I GGYRCC 2 cut(s) 1194, 1221
BspTNI GGTCTC 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 3 cut(s) 152, 243, 625
BssECI CCNNGG 4 cut(s) 1054, 1055, 1235, 1254
BssMI GATC 3 cut(s) 148, 796, 1158
BssNAI GTATAC 2 cut(s) 205, 384
BssSI CACGAG 1 cut(s) 1280
BssT1I CCWWGG 2 cut(s) 1235, 1254
Bst1107I GTATAC 2 cut(s) 205, 384
Bst2BI CACGAG 1 cut(s) 1280
Bst2UI CCWGG 2 cut(s) 223, 481
Bst4CI ACNGT 5 cut(s) 141, 501, 560, 982, 1174
Bst6I CTCTTC 3 cut(s) 257, 300, 1208
BstAPI GCANNNNNTGC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 187
BstDEI CTNAG 8 cut(s) 111, 378, 401, 687, 815, 822, 1125, 1274
BstDSI CCRYGG 2 cut(s) 1235, 1254
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 2 cut(s) 218, 532
BstFNI CGCG 3 cut(s) 20, 48, 267
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 3 cut(s) 22, 598, 673
BstKTI GATC 3 cut(s) 151, 799, 1161
BstMAI GTCTC 3 cut(s) 85, 442, 481
BstMBI GATC 3 cut(s) 148, 796, 1158
BstMWI GCNNNNNNNGC 8 cut(s) 11, 17, 28, 92, 604, 670, 1010, 1115
BstNI CCWGG 2 cut(s) 223, 481
BstNSI RCATGY 1 cut(s) 1075
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 4 cut(s) 221, 479, 1053, 1054
BstSFI CTRYAG 1 cut(s) 1107
BstUI CGCG 3 cut(s) 20, 48, 267
BstV1I GCAGC 2 cut(s) 73, 226
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 1 cut(s) 1158
BstXI CCANNNNNNTGG 2 cut(s) 706, 840
BstYI RGATCY 1 cut(s) 1158
BstZ17I GTATAC 2 cut(s) 205, 384
BsuRI GGCC 1 cut(s) 743
BtgI CCRYGG 2 cut(s) 1235, 1254
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 218, 532
BtsI GCAGTG 1 cut(s) 1104
BtsIMutI CAGTG 4 cut(s) 409, 734, 1104, 1170
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 3 cut(s) 22, 598, 673
Cfr13I GGNCC 1 cut(s) 742
Cfr9I CCCGGG 1 cut(s) 1054
CseI GACGC 1 cut(s) 54
Csp6I GTAC 7 cut(s) 188, 502, 956, 1069, 1195, 1222, 1267
CviAII CATG 3 cut(s) 1072, 1236, 1255
CviQI GTAC 7 cut(s) 188, 502, 956, 1069, 1195, 1222, 1267
DdeI CTNAG 8 cut(s) 111, 378, 401, 687, 815, 822, 1125, 1274
DpnI GATC 3 cut(s) 150, 798, 1160
DpnII GATC 3 cut(s) 148, 796, 1158
Eam1104I CTCTTC 3 cut(s) 257, 300, 1208
EarI CTCTTC 3 cut(s) 257, 300, 1208
Eco130I CCWWGG 2 cut(s) 1235, 1254
Eco31I GGTCTC 1 cut(s) 442
Eco32I GATATC 2 cut(s) 37, 768
Eco47III AGCGCT 1 cut(s) 597
Eco57I CTGAAG 1 cut(s) 620
Eco88I CYCGRG 1 cut(s) 1054
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRI GAATTC 2 cut(s) 396, 407
EcoRII CCWGG 2 cut(s) 221, 479
EcoRV GATATC 2 cut(s) 37, 768
EcoT14I CCWWGG 2 cut(s) 1235, 1254
EcoT22I ATGCAT 2 cut(s) 427, 970
ErhI CCWWGG 2 cut(s) 1235, 1254
FaeI CATG 3 cut(s) 1075, 1239, 1258
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 2 cut(s) 57, 690
FatI CATG 3 cut(s) 1071, 1235, 1254
FblI GTMKAC 2 cut(s) 204, 383
Fnu4HI GCNGC 3 cut(s) 12, 87, 240
FokI GGATG 2 cut(s) 205, 539
Fsp4HI GCNGC 3 cut(s) 12, 87, 240
FspBI CTAG 2 cut(s) 900, 995
GlaI GCGC 3 cut(s) 21, 597, 672
GluI GCNGC 3 cut(s) 12, 87, 240
GsuI CTGGAG 1 cut(s) 502
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 1 cut(s) 743
HapII CCGG 1 cut(s) 1055
HgaI GACGC 1 cut(s) 54
HhaI GCGC 3 cut(s) 22, 598, 673
Hin1II CATG 3 cut(s) 1075, 1239, 1258
Hin6I GCGC 3 cut(s) 20, 596, 671
HinP1I GCGC 3 cut(s) 20, 596, 671
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 6 cut(s) 102, 134, 311, 813, 1183, 1278
HpaII CCGG 1 cut(s) 1055
HphI GGTGA 5 cut(s) 143, 184, 254, 1252, 1274
Hpy166II GTNNAC 3 cut(s) 205, 384, 556
Hpy188I TCNGA 2 cut(s) 583, 801
Hpy188III TCNNGA 6 cut(s) 121, 415, 870, 1016, 1036, 1124
Hpy8I GTNNAC 3 cut(s) 205, 384, 556
HpyCH4III ACNGT 5 cut(s) 141, 501, 560, 982, 1174
HpyCH4IV ACGT 1 cut(s) 936
HpyCH4V TGCA 3 cut(s) 425, 968, 1109
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 17, 28, 92, 604, 670, 1010, 1115
HpyF3I CTNAG 8 cut(s) 111, 378, 401, 687, 815, 822, 1125, 1274
HpySE526I ACGT 1 cut(s) 936
Hsp92II CATG 3 cut(s) 1075, 1239, 1258
HspAI GCGC 3 cut(s) 20, 596, 671
KpnI GGTACC 2 cut(s) 1198, 1225
Kzo9I GATC 3 cut(s) 148, 796, 1158
LmnI GCTCC 4 cut(s) 8, 593, 1018, 1141
Lsp1109I GCAGC 2 cut(s) 73, 226
LweI GCATC 7 cut(s) 227, 412, 594, 876, 955, 977, 1015
MaeI CTAG 2 cut(s) 900, 995
MaeII ACGT 1 cut(s) 936
MaeIII GTNAC 4 cut(s) 172, 371, 439, 463
MalI GATC 3 cut(s) 150, 798, 1160
MboI GATC 3 cut(s) 148, 796, 1158
MboII GAAGA 9 cut(s) 97, 239, 244, 251, 317, 520, 613, 1085, 1225
MflI RGATCY 1 cut(s) 1158
MluCI AATT 6 cut(s) 229, 396, 407, 570, 719, 1151
MluI ACGCGT 1 cut(s) 46
MlyI GAGTC 2 cut(s) 807, 1272
MmeI TCCRAC 1 cut(s) 571
Mph1103I ATGCAT 2 cut(s) 427, 970
MseI TTAA 1 cut(s) 1076
MslI CAYNNNNRTG 5 cut(s) 198, 729, 838, 1234, 1253
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 1055
MspR9I CCNGG 4 cut(s) 223, 481, 1055, 1056
Mva1269I GAATGC 2 cut(s) 475, 630
MvaI CCWGG 2 cut(s) 223, 481
MvnI CGCG 3 cut(s) 20, 48, 267
MwoI GCNNNNNNNGC 8 cut(s) 11, 17, 28, 92, 604, 670, 1010, 1115
NciI CCSGG 2 cut(s) 1055, 1056
NcoI CCATGG 2 cut(s) 1235, 1254
NdeII GATC 3 cut(s) 148, 796, 1158
NlaIII CATG 3 cut(s) 1075, 1239, 1258
NlaIV GGNNCC 3 cut(s) 1137, 1196, 1223
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 172, 463
NsiI ATGCAT 2 cut(s) 427, 970
NspI RCATGY 1 cut(s) 1075
PciI ACATGT 1 cut(s) 1071
PcsI WCGNNNNNNNCGW 1 cut(s) 742
PctI GAATGC 2 cut(s) 475, 630
PfeI GAWTC 4 cut(s) 102, 134, 311, 1183
PflMI CCANNNNNTGG 1 cut(s) 785
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 3 cut(s) 13, 88, 241
PleI GAGTC 2 cut(s) 807, 1272
PpsI GAGTC 2 cut(s) 807, 1272
PscI ACATGT 1 cut(s) 1071
Psp1406I AACGTT 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 221, 479
PspEI GGTNACC 1 cut(s) 371
PspGI CCWGG 2 cut(s) 221, 479
PspN4I GGNNCC 3 cut(s) 1137, 1196, 1223
PspPI GGNCC 1 cut(s) 742
PsrI GAACNNNNNNTAC 2 cut(s) 1052, 1084
PstI CTGCAG 1 cut(s) 1111
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 1158
RsaI GTAC 7 cut(s) 189, 503, 957, 1070, 1196, 1223, 1268
RsaNI GTAC 7 cut(s) 188, 502, 956, 1069, 1195, 1222, 1267
RseI CAYNNNNRTG 5 cut(s) 198, 729, 838, 1234, 1253
SaqAI TTAA 1 cut(s) 1076
SatI GCNGC 3 cut(s) 12, 87, 240
Sau3AI GATC 3 cut(s) 148, 796, 1158
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 2 cut(s) 807, 1272
ScrFI CCNGG 4 cut(s) 223, 481, 1055, 1056
SfaNI GCATC 7 cut(s) 227, 412, 594, 876, 955, 977, 1015
SfcI CTRYAG 1 cut(s) 1107
SmaI CCCGGG 1 cut(s) 1056
SmiMI CAYNNNNRTG 5 cut(s) 198, 729, 838, 1234, 1253
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 6 cut(s) 229, 396, 407, 570, 719, 1151
SsiI CCGC 4 cut(s) 18, 84, 265, 927
SspI AATATT 1 cut(s) 547
SspMI CTAG 2 cut(s) 900, 995
StyD4I CCNGG 4 cut(s) 221, 479, 1053, 1054
StyI CCWWGG 2 cut(s) 1235, 1254
TaaI ACNGT 5 cut(s) 141, 501, 560, 982, 1174
TaiI ACGT 1 cut(s) 939
TaqI TCGA 4 cut(s) 120, 273, 294, 736
TasI AATT 6 cut(s) 229, 396, 407, 570, 719, 1151
TatI WGTACW 3 cut(s) 187, 501, 1068
TfiI GAWTC 4 cut(s) 102, 134, 311, 1183
Tru1I TTAA 1 cut(s) 1076
Tru9I TTAA 1 cut(s) 1076
TscAI CASTG 4 cut(s) 409, 734, 1111, 1177
TseFI GTSAC 2 cut(s) 172, 463
TseI GCWGC 3 cut(s) 11, 86, 239
Tsp45I GTSAC 2 cut(s) 172, 463
TspDTI ATGAA 4 cut(s) 400, 528, 713, 763
TspGWI ACGGA 1 cut(s) 1133
TspMI CCCGGG 1 cut(s) 1054
TspRI CASTG 4 cut(s) 409, 734, 1111, 1177
Van91I CCANNNNNTGG 1 cut(s) 785
XapI RAATTY 4 cut(s) 396, 407, 719, 1151
XceI RCATGY 1 cut(s) 1075
XmaI CCCGGG 1 cut(s) 1054
XmiI GTMKAC 2 cut(s) 204, 383
XspI CTAG 2 cut(s) 900, 995
Zsp2I ATGCAT 2 cut(s) 427, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.