pycom16g08380

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
5578965 .. 5581899
2935 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g08380.10

Sequence Viewer

Length: 1287 bp
ATGGCAGGGGCAGTCTCGGCGCTGTTCCTCCTAGACATCAAAGGCCGCGTTCTCATCTGGCGCGACTACCGCGGCGACGTCTCCGCCGCTCAAGCCGAGCGCTTCTTCACTAAGCTCATCGAGAAAGAGGTTGATCCGGAGTCTCATGATCCAGTTGTCCATGACAATGGCGTGAGCTACTTGTTTATACAGCATAACAATGTTTACTTGATGACTGCGTCCAGGCAGAACTGTAATGCCGCTAGTCTTCTTTTCTTTCTACACCGCATAGTCGATGTGTTCAAGCATTACTTTGAAGAGTTAGAAGAAGAATCGCTTAGGGATAACTTTGTGGTTGTGTATGAGTTGCTGGATGAAATGATGGACTTTGGTTACCCTCAGTATACTGAAGCGAAGATTCTCAGTGAATTTATCAAGACTGATGCTTACAGGATGGAAGTTACACAGAGGCCTCCCATGGCCGTAACAAATGCGGTGTCTTGGCGAAGTGAAGGAATACGTTACAAGAAGAATGAGGTTTTCCTGGATGTGGTGGAGAGCGTTAATATACTTGTTAACAGCAATGGACAAATCATTAGGTCTGATGTTGTTGGTGCGTTGAAGATGAGAACTTATTTGAGTGGTATGCCTGAGTGTAAGCTGGGCTTAAATGATAGAGTGTTATTGGAGGCACAAGGTCGAGCAACAAAGGGAAAAGCCATTGATTTGGAAGACATTAAATTTCATCAGTGTGTCCGTTTGGCTCGGTTTGAAAATGACCGGACAATATCCTTTGTACCACCTGATGGAGCTTTTGATCTTATGACATATAGGCTGAGTACACAGGTTAAGCCTTTAATTTGGGTTGAATGTCAAATTGAAAGGCATTCAAAAAGTCGCATTGAGATTCTGGTAAAAGCTAGAAGTCAGTTCAAGGAGCGTAGCACTGCAACAAATGTTGAGATTGAGGTGCCTGTGGTATCTGATGCAACTAATCCAGATGTTCGGACATCATTAGGATCTGCAGCATATGCACCTGAAAGTGATGCACTTATCTGGAAAATAAGATCTTTTCCTGGAGGCAAGGAATACATGTTGAGAGCGGAGTTTCACCTTCCAAGTGTAACGGCTGAAGAATCAACTCCTGAGAGAAAAGCTCCTATACGTGTGAAGTTCGAGATACCATATTTTACTGTTTCTGGAATACAGGTTCGTTACCTCAAGATTATTGAAAAAAGCGGATACCAAGCTCTTCCATGGGTGAGATACATAACCATGGCCGGCGAGTATGAATTAAGACTAGTATAA

Protein Analysis

429

Amino Acids

49.09

Weight (kDa)

6.01

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 949
AccB7I CCANNNNNTGG 1 cut(s) 785
AccBSI CCGCTC 2 cut(s) 89, 1082
AccI GTMKAC 1 cut(s) 383
AccII CGCG 3 cut(s) 48, 63, 72
AccIII TCCGGA 1 cut(s) 136
AclWI GGATC 3 cut(s) 128, 143, 1006
AcoI YGGCCR 2 cut(s) 459, 1257
AcsI RAATTY 2 cut(s) 407, 719
AcuI CTGAAG 2 cut(s) 408, 1131
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 777, 820
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 529, 785
AflIII ACRYGT 2 cut(s) 1071, 1144
AgsI TTSAA 9 cut(s) 283, 296, 601, 752, 848, 860, 870, 913, 1211
AhlI ACTAGT 1 cut(s) 1279
AjnI CCWGG 3 cut(s) 221, 522, 1054
AloI GAACNNNNNNTCC 2 cut(s) 1173, 1205
AluBI AGCT 7 cut(s) 115, 177, 640, 791, 899, 1136, 1229
AluI AGCT 7 cut(s) 115, 177, 640, 791, 899, 1136, 1229
Alw26I GTCTC 3 cut(s) 19, 85, 147
AlwI GGATC 3 cut(s) 128, 143, 1006
Aor13HI TCCGGA 1 cut(s) 136
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 4 cut(s) 43, 449, 459, 1257
ApeKI GCWGC 1 cut(s) 1004
ApoI RAATTY 2 cut(s) 407, 719
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AspLEI GCGC 3 cut(s) 22, 63, 102
AsuHPI GGTGA 2 cut(s) 1082, 1252
BanI GGYRCC 1 cut(s) 949
BbsI GAAGAC 2 cut(s) 239, 717
BbvI GCAGC 1 cut(s) 1016
BccI CCATC 3 cut(s) 355, 427, 779
BceAI ACGGC 2 cut(s) 446, 1122
BciT130I CCWGG 3 cut(s) 223, 524, 1056
BciVI GTATCC 1 cut(s) 1214
BcoDI GTCTC 3 cut(s) 19, 85, 147
BcuI ACTAGT 1 cut(s) 1279
BfaI CTAG 4 cut(s) 32, 243, 900, 1280
BfmI CTRYAG 1 cut(s) 1002
BfoI RGCGCY 2 cut(s) 23, 103
BfuI GTATCC 1 cut(s) 1214
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 5 cut(s) 46, 73, 87, 240, 1005
BlsI GCNGC 5 cut(s) 47, 74, 88, 241, 1006
Bme1390I CCNGG 3 cut(s) 223, 524, 1056
BmiI GGNNCC 1 cut(s) 951
BmrFI CCNGG 3 cut(s) 223, 524, 1056
BmsI GCATC 3 cut(s) 412, 955, 1015
BpiI GAAGAC 2 cut(s) 239, 717
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
BpmI CTGGAG 1 cut(s) 1077
Bpu10I CCTNAGC 1 cut(s) 317
BpuEI CTTGAG 2 cut(s) 75, 1184
BsaAI YACGTR 1 cut(s) 1145
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 70, 456, 1235, 1254
BsaWI WCCGGW 2 cut(s) 136, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 529, 785
Bse118I RCCGGY 1 cut(s) 1259
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 568
BseAI TCCGGA 1 cut(s) 136
BseBI CCWGG 3 cut(s) 223, 524, 1056
BseDI CCNNGG 4 cut(s) 70, 456, 1235, 1254
BseGI GGATG 3 cut(s) 358, 438, 532
BseLI CCNNNNNNNGG 2 cut(s) 529, 785
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 5 cut(s) 392, 415, 621, 806, 1116
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 1016
BseYI CCCAGC 1 cut(s) 640
Bsh1236I CGCG 3 cut(s) 48, 63, 72
BshFI GGCC 4 cut(s) 45, 451, 461, 1259
BshNI GGYRCC 1 cut(s) 949
BsiSI CCGG 3 cut(s) 137, 760, 1260
BslI CCNNNNNNNGG 2 cut(s) 529, 785
BsmAI GTCTC 3 cut(s) 19, 85, 147
BsmBI CGTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 4 cut(s) 45, 451, 461, 1259
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 5 cut(s) 133, 148, 796, 998, 1046
Bsp19I CCATGG 3 cut(s) 456, 1235, 1254
BspANI GGCC 4 cut(s) 45, 451, 461, 1259
BspCNI CTCAG 5 cut(s) 391, 414, 622, 807, 1117
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 3 cut(s) 48, 63, 72
BspHI TCATGA 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 951
BspMAI CTGCAG 1 cut(s) 1006
BspPI GGATC 3 cut(s) 128, 143, 1006
BspQI GCTCTTC 1 cut(s) 1236
BspT107I GGYRCC 1 cut(s) 949
BsrBI CCGCTC 2 cut(s) 89, 1082
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 1259
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 1259
BssECI CCNNGG 4 cut(s) 70, 456, 1235, 1254
BssMI GATC 5 cut(s) 133, 148, 796, 998, 1046
BssNAI GTATAC 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 3 cut(s) 456, 1235, 1254
Bst1107I GTATAC 1 cut(s) 384
Bst2UI CCWGG 3 cut(s) 223, 524, 1056
Bst4CI ACNGT 2 cut(s) 233, 1174
Bst6I CTCTTC 2 cut(s) 291, 1236
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBAI YACGTR 1 cut(s) 1145
BstC8I GCNNGC 1 cut(s) 1261
BstDEI CTNAG 7 cut(s) 111, 317, 378, 401, 630, 815, 1125
BstDSI CCRYGG 4 cut(s) 70, 456, 1235, 1254
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 3 cut(s) 358, 438, 532
BstFNI CGCG 3 cut(s) 48, 63, 72
BstH2I RGCGCY 2 cut(s) 23, 103
BstHHI GCGC 3 cut(s) 22, 63, 102
BstKTI GATC 5 cut(s) 136, 151, 799, 1001, 1049
BstMAI GTCTC 3 cut(s) 19, 85, 147
BstMBI GATC 5 cut(s) 133, 148, 796, 998, 1046
BstMWI GCNNNNNNNGC 4 cut(s) 17, 69, 92, 1010
BstNI CCWGG 3 cut(s) 223, 524, 1056
BstNSI RCATGY 1 cut(s) 1075
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 3 cut(s) 221, 522, 1054
BstSFI CTRYAG 1 cut(s) 1002
BstUI CGCG 3 cut(s) 48, 63, 72
BstV1I GCAGC 1 cut(s) 1016
BstV2I GAAGAC 2 cut(s) 239, 717
BstX2I RGATCY 2 cut(s) 998, 1046
BstXI CCANNNNNNTGG 2 cut(s) 167, 706
BstYI RGATCY 2 cut(s) 998, 1046
BstZ17I GTATAC 1 cut(s) 384
BsuI GTATCC 1 cut(s) 1214
BsuRI GGCC 4 cut(s) 45, 451, 461, 1259
BtgI CCRYGG 4 cut(s) 70, 456, 1235, 1254
BtsCI GGATG 3 cut(s) 358, 438, 532
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 3 cut(s) 409, 734, 924
Cac8I GCNNGC 1 cut(s) 1261
CciI TCATGA 1 cut(s) 145
CfoI GCGC 3 cut(s) 22, 63, 102
Cfr10I RCCGGY 1 cut(s) 1259
Cfr42I CCGCGG 1 cut(s) 73
CseI GACGC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 776, 819
CviAII CATG 6 cut(s) 146, 161, 457, 1072, 1236, 1255
CviQI GTAC 2 cut(s) 776, 819
DdeI CTNAG 7 cut(s) 111, 317, 378, 401, 630, 815, 1125
DpnI GATC 5 cut(s) 135, 150, 798, 1000, 1048
DpnII GATC 5 cut(s) 133, 148, 796, 998, 1046
EaeI YGGCCR 2 cut(s) 459, 1257
Eam1104I CTCTTC 2 cut(s) 291, 1236
EarI CTCTTC 2 cut(s) 291, 1236
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 3 cut(s) 456, 1235, 1254
Eco147I AGGCCT 1 cut(s) 451
Eco47III AGCGCT 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 408, 1131
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 221, 522, 1054
EcoT14I CCWWGG 3 cut(s) 456, 1235, 1254
ErhI CCWWGG 3 cut(s) 456, 1235, 1254
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 6 cut(s) 149, 164, 460, 1075, 1239, 1258
FalI AAGNNNNNCTT 6 cut(s) 275, 307, 300, 332, 629, 661
FatI CATG 6 cut(s) 145, 160, 456, 1071, 1235, 1254
FauNDI CATATG 1 cut(s) 1009
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 5 cut(s) 46, 73, 87, 240, 1005
FokI GGATG 3 cut(s) 365, 445, 539
Fsp4HI GCNGC 5 cut(s) 46, 73, 87, 240, 1005
FspBI CTAG 4 cut(s) 32, 243, 900, 1280
GlaI GCGC 3 cut(s) 21, 62, 101
GluI GCNGC 5 cut(s) 46, 73, 87, 240, 1005
GsaI CCCAGC 1 cut(s) 644
GsuI CTGGAG 1 cut(s) 1077
HaeII RGCGCY 2 cut(s) 23, 103
HaeIII GGCC 4 cut(s) 45, 451, 461, 1259
HapII CCGG 3 cut(s) 137, 760, 1260
HgaI GACGC 1 cut(s) 207
HhaI GCGC 3 cut(s) 22, 63, 102
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 6 cut(s) 149, 164, 460, 1075, 1239, 1258
Hin6I GCGC 3 cut(s) 20, 61, 100
HinP1I GCGC 3 cut(s) 20, 61, 100
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 5 cut(s) 140, 311, 397, 886, 1115
HpaI GTTAAC 1 cut(s) 556
HpaII CCGG 3 cut(s) 137, 760, 1260
HphI GGTGA 2 cut(s) 1082, 1252
Hpy166II GTNNAC 4 cut(s) 205, 384, 556, 821
Hpy188I TCNGA 3 cut(s) 583, 964, 987
Hpy8I GTNNAC 4 cut(s) 205, 384, 556, 821
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 485, 1103
HpyCH4III ACNGT 2 cut(s) 233, 1174
HpyCH4IV ACGT 3 cut(s) 78, 499, 1144
HpyCH4V TGCA 5 cut(s) 929, 968, 1004, 1013, 1028
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 69, 92, 1010
HpyF3I CTNAG 7 cut(s) 111, 317, 378, 401, 630, 815, 1125
HpySE526I ACGT 3 cut(s) 78, 499, 1144
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 6 cut(s) 149, 164, 460, 1075, 1239, 1258
HspAI GCGC 3 cut(s) 20, 61, 100
Kpn2I TCCGGA 1 cut(s) 136
KroI GCCGGC 1 cut(s) 1259
KroNI GCCGGC 1 cut(s) 1261
KspAI GTTAAC 1 cut(s) 556
KspI CCGCGG 1 cut(s) 73
Kzo9I GATC 5 cut(s) 133, 148, 796, 998, 1046
LguI GCTCTTC 1 cut(s) 1236
LmnI GCTCC 3 cut(s) 788, 916, 1141
Lsp1109I GCAGC 1 cut(s) 1016
LweI GCATC 3 cut(s) 412, 955, 1015
MaeI CTAG 4 cut(s) 32, 243, 900, 1280
MaeII ACGT 3 cut(s) 78, 499, 1144
MaeIII GTNAC 6 cut(s) 371, 439, 463, 500, 1102, 1193
MalI GATC 5 cut(s) 135, 150, 798, 1000, 1048
MbiI CCGCTC 2 cut(s) 89, 1082
MboI GATC 5 cut(s) 133, 148, 796, 998, 1046
MflI RGATCY 2 cut(s) 998, 1046
MluCI AATT 5 cut(s) 407, 719, 837, 855, 1271
MlyI GAGTC 1 cut(s) 149
MroI TCCGGA 1 cut(s) 136
MroNI GCCGGC 1 cut(s) 1259
MseI TTAA 7 cut(s) 543, 555, 647, 717, 828, 836, 1274
MslI CAYNNNNRTG 4 cut(s) 165, 198, 729, 1253
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 3 cut(s) 137, 760, 1260
MspR9I CCNGG 3 cut(s) 223, 524, 1056
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 3 cut(s) 223, 524, 1056
MvnI CGCG 3 cut(s) 48, 63, 72
MwoI GCNNNNNNNGC 4 cut(s) 17, 69, 92, 1010
NaeI GCCGGC 1 cut(s) 1261
NcoI CCATGG 3 cut(s) 456, 1235, 1254
NdeI CATATG 1 cut(s) 1009
NdeII GATC 5 cut(s) 133, 148, 796, 998, 1046
NgoMIV GCCGGC 1 cut(s) 1259
NlaIII CATG 6 cut(s) 149, 164, 460, 1075, 1239, 1258
NlaIV GGNNCC 1 cut(s) 951
NmeAIII GCCGAG 1 cut(s) 121
NspI RCATGY 1 cut(s) 1075
PagI TCATGA 1 cut(s) 145
PceI AGGCCT 1 cut(s) 451
PciI ACATGT 1 cut(s) 1071
PciSI GCTCTTC 1 cut(s) 1236
PctI GAATGC 1 cut(s) 865
PdiI GCCGGC 1 cut(s) 1261
PfeI GAWTC 4 cut(s) 311, 397, 886, 1115
PflFI GACNNNGTC 1 cut(s) 217
PflMI CCANNNNNTGG 1 cut(s) 785
PfoI TCCNGGA 2 cut(s) 522, 1054
PkrI GCNGC 5 cut(s) 47, 74, 88, 241, 1006
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 1 cut(s) 1145
PscI ACATGT 1 cut(s) 1071
Psp6I CCWGG 3 cut(s) 221, 522, 1054
PspEI GGTNACC 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 221, 522, 1054
PspN4I GGNNCC 1 cut(s) 951
PstI CTGCAG 1 cut(s) 1006
PsuI RGATCY 2 cut(s) 998, 1046
PsyI GACNNNGTC 1 cut(s) 217
RsaI GTAC 2 cut(s) 777, 820
RsaNI GTAC 2 cut(s) 776, 819
RseI CAYNNNNRTG 4 cut(s) 165, 198, 729, 1253
SacII CCGCGG 1 cut(s) 73
SapI GCTCTTC 1 cut(s) 1236
SaqAI TTAA 7 cut(s) 543, 555, 647, 717, 828, 836, 1274
SatI GCNGC 5 cut(s) 46, 73, 87, 240, 1005
Sau3AI GATC 5 cut(s) 133, 148, 796, 998, 1046
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 3 cut(s) 223, 524, 1056
SfaNI GCATC 3 cut(s) 412, 955, 1015
SfcI CTRYAG 1 cut(s) 1002
Sfr303I CCGCGG 1 cut(s) 73
SgrBI CCGCGG 1 cut(s) 73
SmiMI CAYNNNNRTG 4 cut(s) 165, 198, 729, 1253
SmlI CTYRAG 2 cut(s) 90, 1199
SmoI CTYRAG 2 cut(s) 90, 1199
SpeI ACTAGT 1 cut(s) 1279
Sse9I AATT 5 cut(s) 407, 719, 837, 855, 1271
SseBI AGGCCT 1 cut(s) 451
SspMI CTAG 4 cut(s) 32, 243, 900, 1280
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 3 cut(s) 221, 522, 1054
StyI CCWWGG 3 cut(s) 456, 1235, 1254
TaaI ACNGT 2 cut(s) 233, 1174
TaiI ACGT 3 cut(s) 81, 502, 1147
TaqI TCGA 4 cut(s) 120, 273, 679, 1155
TasI AATT 5 cut(s) 407, 719, 837, 855, 1271
TatI WGTACW 1 cut(s) 818
TauI GCSGC 4 cut(s) 48, 75, 89, 242
TfiI GAWTC 4 cut(s) 311, 397, 886, 1115
Tru1I TTAA 7 cut(s) 543, 555, 647, 717, 828, 836, 1274
Tru9I TTAA 7 cut(s) 543, 555, 647, 717, 828, 836, 1274
TscAI CASTG 3 cut(s) 409, 734, 931
TseI GCWGC 1 cut(s) 1004
TspDTI ATGAA 3 cut(s) 369, 713, 1284
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 3 cut(s) 409, 734, 931
Tth111I GACNNNGTC 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 785
XapI RAATTY 2 cut(s) 407, 719
XceI RCATGY 1 cut(s) 1075
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 4 cut(s) 32, 243, 900, 1280
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.