Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004476

Physical Location & Seq

Genomic Coordinates Reverse (-)

448009 .. 455489

Gene Structure 7481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0005500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGGCTGATCATGAAAGAGATGAGGTACCTATGCTTTCGGATACTCATCCACAGTCATCAAATGAGCACCTGCCATTACAAATTGAGAGATTTACGTCCAGGACACGGAGCGCATCAATTTCGATTCCTATGAATTCTATGGATTCATATGAAAGGGGTGAAGTTAACCTTGTAGGCCATACTGGTCCCTTAAGAACTCACACAAAAACACCCTTCTTACCTATGAGTGGTCCGTTATATGCTAACCGCGGCACGCCTGATAGTGTTCTGTGGCTAACTCGAGGTGTGACAGGGCAAGAAGCAGCAGAAACTACAGCAGAAAAGTTTCCTTCTACTAGTGCAACAAATGAGAATGAGTGGAATGACGACTATACTGCAAAAAACGAACACTTACTGAGATCTGGCCAATTGGGGATGTGCAATGATCCTTACTGCACAACTTGCCCAACTGTCTATAAGGCTACTCAACCAAAATACTCGAGGCCCTCGGGCAAGTTCCATAATGCTCTCTATGGGGATGCCAAGGGATGGGCCAGGAGGTTTTTCTCATGTCTGCGTCCATACATTCCTGGAGTTATGAACCCTCATGCTAAAATTGTGCAACAGTGGAACCAGTTTTTTGTCATTTCTTGCTTAGTAGCAATTTTTGTAGATCCATTGTTTTTCTTCCTGCTGTCTGTTCAAGAGGATAATAAATGTATAGTTATTGATCAGCCATGGACCACTACTTTTGTGGTTTTCAGAAGCATGACTGATCTCATATACTTCATGCACATGCTTCTCCAGTTTAGATTGGCTTATGTGGCTCCCGAGTCTAGAGTGGTTGGTGCTGGAGAGTTAGTTGACCATCCAAAGAAAATTGCTCTCAATTACCTTAAAGGATATTTTCTGATTGACTTTTTTGTTGTATTACCACTTCCTCAGATCATACTATTACTAGTTCTGCCAAAGAACTTGGGATCATCTGGAGCAAACTACGCAAAAAATCTTTTACGTGCTGCCGTTCTTCTTCAGTACATTCCCAGGTTGTGTAGGTTTCTACCTCTGCTTGCTGGACAGTCACCAAGTGGCTTCATATTTGAGTCAGCATGGGCCAATTTTATAATAAATCTTCTCACTTTTGTCTTATCTGGCCACGTCGTCGGGTCATGCTGGTACCTCTTTGGATTACAGAGGGTTAATCAATGTTTTCGAGATGCCTGTCACAAGACTCACAACTCTACGATTAATGAATGCATGAGGTTCATAGACTGTGGGCATGGAAGGGACAGTGAAGGTTCTAACGGGGATGAGCAACTGCGTAATACCTGGAAAAACAATGAAAATGCTACTGCTTGTTTTAACAAAACTGGTTTTGACTACGGAATCTATGCCCAAGCTGTTGGCCTTACGACAGAAAATAGCATAATCACTAGATATGTATATGCATTGTTTTGGGGATTTCAGCAAATCAGTACTCTGGCTGGAAACCAAGTTCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACAATGGCCATTATTGGCCTAGGTCTCTTGCTTTTTGCTCTTCTCATAGGAAATATGCAGAACTTTCTGCAGGCACTTGGCCGGAGAAGGTTAGAAATGTCACTGAGACGTCGTGACGTTGAGCAGTGGATGAGGCATAGACGTTTGCCAGATGAATTAAGGAGGCGAGTACGACAAGCTGAAAGGTATAATTGGGCAGCTACCAGAGGAGTAAATGAAGAAATGCTTTTGGATGTCTTGCCTGAAGACCTTCAGACAGACATAAGACGCCATCTCTTCAAGTTTATTAAGAAAGTAAGGATTTTTGCCCTCATGGATGAACCGATCTTAGATTCCATTTGCGGAAGACTAAGACAGAAGACATACATCCAAGGAAGCAAAGTTTTGTACTGTGGTGGTCTAATTGAGAAGATGGTCTTTATTGTGCGCGGAAAAATGGAGAGCATAGGAGAAGATGGGATTAGAGTTTCCTTATCTGAAGGGGATGTTTGTGGTGAGGAGCTTCTCTCATGGTGTCTCGAGCATTCTTCGGTAAATAAAGACGGTAAAAAGATCAGGATTCCTGGACAGCGAATGTTAAGCAACAGGATGGTGATATGCTTAACAAATGTCGAAGCATTTTCACTAAGGGCAGCTGACATTGAAGAGGTCACCAGCCTCTTTGCCAGATTCTTGCGCAAACCACGTGTTCAAGGAGCCATAAGGTACGAGTCACCTTACTGGAGAGGCCTTGCGGCAAGATGCATTCAAGTGGCTTGGAGATACAGGAGAAAGCGCCTACATCGTGCAGATACTTCTCAATCCAATCATGCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002478 GO:0002495 GO:0002504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006887 GO:0006955 GO:0006996 GO:0008150 GO:0009605 GO:0009987 GO:0012505 GO:0012506 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0019882 GO:0019884 GO:0019886 GO:0021700 GO:0030135 GO:0030136 GO:0030141 GO:0030154 GO:0030659 GO:0030662 GO:0030665 GO:0030667 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032438 GO:0032502 GO:0032588 GO:0032940 GO:0033059 GO:0035579 GO:0035646 GO:0036230 GO:0042119 GO:0042581 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043299 GO:0043312 GO:0043473 GO:0043476 GO:0043482 GO:0043485 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046903 GO:0046907 GO:0048002 GO:0048066 GO:0048753 GO:0048757 GO:0048869 GO:0050690 GO:0050896 GO:0050931 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098852 GO:0099503

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Adap_comp_sub Clat_adaptor_s

Protein Analysis

774

Amino Acids

88.53

Weight (kDa)

9.11

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	204 - 529	7.3e-20	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10730 AT1G60780
fragaria_vesca	FvH4_4g25870 FvH4_4g25870 FvH4_5g05940 FvH4_5g05940
malus_domestica	MD06G1169300.v1.1 MD13G1097400.v1.1 MD14G1174600.v1.1 MD16G1098500.v1.1
prunus_persica	Prupe.1G248000_v2.0.a1 Prupe.1G248000_v2.0.a1 Prupe.5G168100_v2.0.a1
pyrus_communis	pycom06g15080 pycom14g14570 pycom16g08380
rosa_chinensis	RchiOBHm_Chr4g0433301 RchiOBHm_Chr7g0192901
rosa_laevigata	RLG00000004314 RLG00000006765
rosa_multiflora	Rmu_sc0000354.1_g000005 Rmu_sc0002040.1_g000054
rosa_roxburghii	Rroxscaffold_3G00262560 Rroxscaffold_5G00374860
rosa_rugosa	Rorug04G0267900 Rorug07G0005500
rosa_samantha	Rh4BG329900 Rh4CG345300 Rh4DG326600 Rh7AG131200
rosa_wichuraiana	Rw4G027900 Rw7G011190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1103
AarI	CACCTGC	1 cut(s)	78
AatII	GACGTC	1 cut(s)	1618
Acc16I	TGCGCA	1 cut(s)	2183
Acc36I	ACCTGC	1 cut(s)	78
Acc65I	GGTACC	2 cut(s)	25, 1155
AccB1I	GGYRCC	2 cut(s)	25, 1155
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccII	CGCG	2 cut(s)	249, 1935
AciI	CCGC	5 cut(s)	247, 249, 1848, 1935, 2240
AclWI	GGATC	3 cut(s)	419, 647, 967
AcoI	YGGCCR	4 cut(s)	403, 1132, 1512, 1585
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	4 cut(s)	995, 1742, 1770, 2004
AcvI	CACGTG	1 cut(s)	2192
AcyI	GRCGYC	2 cut(s)	1615, 1774
AdeI	CACNNNGTG	1 cut(s)	1067
AfaI	GTAC	7 cut(s)	27, 1016, 1157, 1456, 1677, 1895, 2213
AfiI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	2191
AgsI	TTSAA	5 cut(s)	683, 1786, 2150, 2198, 2255
AhlI	ACTAGT	2 cut(s)	335, 937
AjiI	CACGTC	1 cut(s)	1138
AjnI	CCWGG	6 cut(s)	98, 533, 568, 1022, 1307, 2068
AloI	GAACNNNNNNTCC	2 cut(s)	1458, 1490
AluBI	AGCT	6 cut(s)	1379, 1482, 1685, 1706, 2008, 2141
AluI	AGCT	6 cut(s)	1379, 1482, 1685, 1706, 2008, 2141
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	1535, 1606, 2027
AlwI	GGATC	3 cut(s)	419, 647, 967
Ama87I	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
ApeKI	GCWGC	4 cut(s)	302, 998, 1703, 2138
ApoI	RAATTY	1 cut(s)	133
AseI	ATTAAT	1 cut(s)	1227
Asp700I	GAANNNNTTC	2 cut(s)	324, 1755
Asp718I	GGTACC	2 cut(s)	25, 1155
AspA2I	CCTAGG	1 cut(s)	1525
AspLEI	GCGC	4 cut(s)	113, 1935, 2184, 2283
AspS9I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
AsuHPI	GGTGA	6 cut(s)	170, 1053, 2012, 2110, 2149, 2211
AvaI	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
AvaII	GGWCC	3 cut(s)	185, 230, 720
AvrII	CCTAGG	1 cut(s)	1525
BalI	TGGCCA	3 cut(s)	405, 1134, 1514
BanI	GGYRCC	2 cut(s)	25, 1155
BarI	GAAGNNNNNNTAC	2 cut(s)	900, 932
BbrPI	CACGTG	1 cut(s)	2192
BbsI	GAAGAC	3 cut(s)	1758, 1858, 1871
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	314, 985, 1715, 2150
BccI	CCATC	6 cut(s)	522, 855, 1785, 1912, 1955, 2089
BceAI	ACGGC	1 cut(s)	986
BcgI	CGANNNNNNTGC	4 cut(s)	102, 136, 356, 390
BciT130I	CCWGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	2 cut(s)	7, 709
BcoDI	GTCTC	3 cut(s)	1535, 1606, 2027
BcuI	ACTAGT	2 cut(s)	335, 937
BfaI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
BfmI	CTRYAG	2 cut(s)	312, 1574
BfoI	RGCGCY	1 cut(s)	2284
BfrI	CTTAAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	34
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	6 cut(s)	250, 303, 999, 1704, 2139, 2241
BlnI	CCTAGG	1 cut(s)	1525
BlsI	GCNGC	6 cut(s)	251, 304, 1000, 1705, 2140, 2242
BmcAI	AGTACT	1 cut(s)	1456
Bme1390I	CCNGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
Bme18I	GGWCC	3 cut(s)	185, 230, 720
BmeT110I	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
BmgBI	CACGTC	1 cut(s)	1138
BmgT120I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
BmiI	GGNNCC	6 cut(s)	27, 187, 611, 807, 1157, 2203
BmrFI	CCNGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
BmsI	GCATC	4 cut(s)	122, 508, 1186, 2237
BpiI	GAAGAC	3 cut(s)	1758, 1858, 1871
BplI	GAGNNNNNCTC	2 cut(s)	1997, 2029
BpmI	CTGGAG	5 cut(s)	591, 767, 852, 987, 2248
BsaAI	YACGTR	2 cut(s)	995, 2192
BsaBI	GATNNNNATC	1 cut(s)	45
BsaHI	GRCGYC	2 cut(s)	1615, 1774
BsaI	GGTCTC	1 cut(s)	1535
BsaJI	CCNNGG	7 cut(s)	247, 486, 522, 716, 1022, 1525, 1876
BsaXI	ACNNNNNCTCC	2 cut(s)	825, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 227, 528
Bse1I	ACTGG	5 cut(s)	187, 613, 784, 1354, 2231
Bse3DI	GCAATG	1 cut(s)	427
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
BseDI	CCNNGG	7 cut(s)	247, 486, 522, 716, 1022, 1525, 1876
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	3 cut(s)	386, 935, 1601
BseNI	ACTGG	5 cut(s)	187, 613, 784, 1354, 2231
BseRI	GAGGAG	2 cut(s)	1728, 2018
BseXI	GCAGC	4 cut(s)	314, 985, 1715, 2150
BsgI	GTGCAG	2 cut(s)	418, 2313
Bsh1236I	CGCG	2 cut(s)	249, 1935
BshNI	GGYRCC	2 cut(s)	25, 1155
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
BsiSI	CCGG	1 cut(s)	1588
BslFI	GGGAC	2 cut(s)	171, 1280
BslI	CCNNNNNNNGG	3 cut(s)	105, 227, 528
BsmAI	GTCTC	3 cut(s)	1535, 1606, 2027
BsmBI	CGTCTC	1 cut(s)	1606
BsmFI	GGGAC	2 cut(s)	171, 1280
BsmI	GAATGC	3 cut(s)	1238, 2029, 2250
Bso31I	GGTCTC	1 cut(s)	1535
BsoBI	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	716
BspACI	CCGC	5 cut(s)	247, 249, 1848, 1935, 2240
BspCNI	CTCAG	3 cut(s)	387, 934, 1602
BspFNI	CGCG	2 cut(s)	249, 1935
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	6 cut(s)	27, 187, 611, 807, 1157, 2203
BspMAI	CTGCAG	1 cut(s)	1578
BspMI	ACCTGC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	419, 647, 967
BspQI	GCTCTTC	1 cut(s)	1551
BspT107I	GGYRCC	2 cut(s)	25, 1155
BspTI	CTTAAG	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	1535
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	5 cut(s)	187, 613, 784, 1354, 2231
BssECI	CCNNGG	7 cut(s)	247, 486, 522, 716, 1022, 1525, 1876
BssNI	GRCGYC	2 cut(s)	1615, 1774
BssT1I	CCWWGG	4 cut(s)	522, 716, 1525, 1876
Bst2UI	CCWGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
Bst4CI	ACNGT	8 cut(s)	54, 451, 606, 1059, 1253, 1271, 1898, 2051
Bst6I	CTCTTC	3 cut(s)	1551, 1787, 2145
BstACI	GRCGYC	2 cut(s)	1615, 1774
BstAFI	CTTAAG	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstBAI	YACGTR	2 cut(s)	995, 2192
BstC8I	GCNNGC	3 cut(s)	254, 1050, 1578
BstDEI	CTNAG	7 cut(s)	395, 634, 921, 1610, 1834, 1856, 2132
BstDSI	CCRYGG	2 cut(s)	247, 716
BstEII	GGTNACC	1 cut(s)	2155
BstFNI	CGCG	2 cut(s)	249, 1935
BstH2I	RGCGCY	1 cut(s)	2284
BstHHI	GCGC	4 cut(s)	113, 1935, 2184, 2283
BstMAI	GTCTC	3 cut(s)	1535, 1606, 2027
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
BstNI	CCWGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
BstNSI	RCATGY	1 cut(s)	778
BstPI	GGTNACC	1 cut(s)	2155
BstSCI	CCNGG	6 cut(s)	98, 533, 568, 1022, 1307, 2068
BstSFI	CTRYAG	2 cut(s)	312, 1574
BstUI	CGCG	2 cut(s)	249, 1935
BstV1I	GCAGC	4 cut(s)	314, 985, 1715, 2150
BstV2I	GAAGAC	3 cut(s)	1758, 1858, 1871
BstX2I	RGATCY	2 cut(s)	398, 652
BstXI	CCANNNNNNTGG	1 cut(s)	1382
BstYI	RGATCY	2 cut(s)	398, 652
BsuI	GTATCC	1 cut(s)	34
BtgI	CCRYGG	2 cut(s)	247, 716
BtrI	CACGTC	1 cut(s)	1138
BtsI	GCAGTG	1 cut(s)	1637
BtsIMutI	CAGTG	4 cut(s)	611, 1276, 1607, 1637
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	254, 1050, 1578
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	4 cut(s)	113, 1935, 2184, 2283
Cfr13I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
Cfr42I	CCGCGG	1 cut(s)	250
CseI	GACGC	2 cut(s)	545, 1782
Csp6I	GTAC	7 cut(s)	26, 1015, 1156, 1455, 1676, 1894, 2212
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviQI	GTAC	7 cut(s)	26, 1015, 1156, 1455, 1676, 1894, 2212
DdeI	CTNAG	7 cut(s)	395, 634, 921, 1610, 1834, 1856, 2132
DraIII	CACNNNGTG	1 cut(s)	1067
EaeI	YGGCCR	4 cut(s)	403, 1132, 1512, 1585
Eam1104I	CTCTTC	3 cut(s)	1551, 1787, 2145
EarI	CTCTTC	3 cut(s)	1551, 1787, 2145
Eco130I	CCWWGG	4 cut(s)	522, 716, 1525, 1876
Eco147I	AGGCCT	1 cut(s)	2235
Eco31I	GGTCTC	1 cut(s)	1535
Eco47I	GGWCC	3 cut(s)	185, 230, 720
Eco57I	CTGAAG	4 cut(s)	995, 1742, 1770, 2004
Eco72I	CACGTG	1 cut(s)	2192
Eco88I	CYCGRG	5 cut(s)	279, 478, 487, 809, 2024
Eco91I	GGTNACC	1 cut(s)	2155
EcoO109I	RGGNCCY	1 cut(s)	483
EcoO65I	GGTNACC	1 cut(s)	2155
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	6 cut(s)	98, 533, 568, 1022, 1307, 2068
EcoT14I	CCWWGG	4 cut(s)	522, 716, 1525, 1876
EcoT22I	ATGCAT	3 cut(s)	1238, 1429, 2252
ErhI	CCWWGG	4 cut(s)	522, 716, 1525, 1876
Esp3I	CGTCTC	1 cut(s)	1606
FalI	AAGNNNNNCTT	6 cut(s)	153, 185, 1716, 1748, 1907, 1939
FaqI	GGGAC	2 cut(s)	171, 1280
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	2 cut(s)	7, 709
Fnu4HI	GCNGC	6 cut(s)	250, 303, 999, 1704, 2139, 2241
Fsp4HI	GCNGC	6 cut(s)	250, 303, 999, 1704, 2139, 2241
FspBI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
FspI	TGCGCA	1 cut(s)	2183
GlaI	GCGC	4 cut(s)	112, 1934, 2183, 2282
GluI	GCNGC	6 cut(s)	250, 303, 999, 1704, 2139, 2241
GsuI	CTGGAG	5 cut(s)	591, 767, 852, 987, 2248
HaeII	RGCGCY	1 cut(s)	2284
HapII	CCGG	1 cut(s)	1588
HgaI	GACGC	2 cut(s)	545, 1782
HhaI	GCGC	4 cut(s)	113, 1935, 2184, 2283
Hin1I	GRCGYC	2 cut(s)	1615, 1774
Hin6I	GCGC	4 cut(s)	111, 1933, 2182, 2281
HinP1I	GCGC	4 cut(s)	111, 1933, 2182, 2281
HincII	GTYRAC	2 cut(s)	166, 844
HindII	GTYRAC	2 cut(s)	166, 844
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	1588
HphI	GGTGA	6 cut(s)	170, 1053, 2012, 2110, 2149, 2211
Hpy166II	GTNNAC	2 cut(s)	166, 844
Hpy188I	TCNGA	6 cut(s)	40, 743, 891, 924, 1761, 1984
Hpy188III	TCNNGA	9 cut(s)	11, 683, 809, 816, 966, 1193, 1619, 2024, 2062
Hpy8I	GTNNAC	2 cut(s)	166, 844
Hpy99I	CGWCG	3 cut(s)	1142, 1145, 1620
HpyAV	CCTTC	7 cut(s)	223, 339, 1257, 1268, 1587, 1766, 1979
HpyCH4III	ACNGT	8 cut(s)	54, 451, 606, 1059, 1253, 1271, 1898, 2051
HpyCH4IV	ACGT	7 cut(s)	95, 994, 1137, 1615, 1623, 1648, 2191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
HpyF3I	CTNAG	7 cut(s)	395, 634, 921, 1610, 1834, 1856, 2132
HpySE526I	ACGT	7 cut(s)	95, 994, 1137, 1615, 1623, 1648, 2191
Hsp92I	GRCGYC	2 cut(s)	1615, 1774
HspAI	GCGC	4 cut(s)	111, 1933, 2182, 2281
KpnI	GGTACC	2 cut(s)	29, 1159
Ksp22I	TGATCA	2 cut(s)	7, 709
KspAI	GTTAAC	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	1551
LmnI	GCTCC	5 cut(s)	108, 811, 968, 2005, 2201
Lsp1109I	GCAGC	4 cut(s)	314, 985, 1715, 2150
LweI	GCATC	4 cut(s)	122, 508, 1186, 2237
MaeI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
MaeII	ACGT	7 cut(s)	95, 994, 1137, 1615, 1623, 1648, 2191
MaeIII	GTNAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
MfeI	CAATTG	1 cut(s)	407
MflI	RGATCY	2 cut(s)	398, 652
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	3 cut(s)	405, 1134, 1514
MluNI	TGGCCA	3 cut(s)	405, 1134, 1514
MlyI	GAGTC	4 cut(s)	821, 1091, 1204, 2225
Mox20I	TGGCCA	3 cut(s)	405, 1134, 1514
Mph1103I	ATGCAT	3 cut(s)	1238, 1429, 2252
MroXI	GAANNNNTTC	2 cut(s)	324, 1755
MscI	TGGCCA	3 cut(s)	405, 1134, 1514
MslI	CAYNNNNRTG	2 cut(s)	773, 2255
Msp20I	TGGCCA	3 cut(s)	405, 1134, 1514
MspA1I	CMGCKG	2 cut(s)	249, 2141
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	1588
MspR9I	CCNGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
MunI	CAATTG	1 cut(s)	407
Mva1269I	GAATGC	3 cut(s)	1238, 2029, 2250
MvaI	CCWGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
MvnI	CGCG	2 cut(s)	249, 1935
MwoI	GCNNNNNNNGC	3 cut(s)	441, 803, 977
NcoI	CCATGG	1 cut(s)	716
NdeI	CATATG	1 cut(s)	148
NlaIV	GGNNCC	6 cut(s)	27, 187, 611, 807, 1157, 2203
NmuCI	GTSAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
NsbI	TGCGCA	1 cut(s)	2183
NsiI	ATGCAT	3 cut(s)	1238, 1429, 2252
NspI	RCATGY	1 cut(s)	778
PaeR7I	CTCGAG	3 cut(s)	279, 478, 2024
PagI	TCATGA	1 cut(s)	10
PaqCI	CACCTGC	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	2235
PciSI	GCTCTTC	1 cut(s)	1551
PctI	GAATGC	3 cut(s)	1238, 2029, 2250
PdmI	GAANNNNTTC	2 cut(s)	324, 1755
PfeI	GAWTC	6 cut(s)	124, 143, 1365, 1838, 2065, 2175
PflMI	CCANNNNNTGG	1 cut(s)	528
PfoI	TCCNGGA	3 cut(s)	98, 568, 2068
PkrI	GCNGC	6 cut(s)	251, 304, 1000, 1705, 2140, 2242
PleI	GAGTC	4 cut(s)	820, 1090, 1204, 2224
PmaCI	CACGTG	1 cut(s)	2192
PmlI	CACGTG	1 cut(s)	2192
PpsI	GAGTC	4 cut(s)	820, 1090, 1204, 2224
Ppu21I	YACGTR	2 cut(s)	995, 2192
PshBI	ATTAAT	1 cut(s)	1227
PsiI	TTATAA	1 cut(s)	1103
Psp6I	CCWGG	6 cut(s)	98, 533, 568, 1022, 1307, 2068
PspCI	CACGTG	1 cut(s)	2192
PspEI	GGTNACC	1 cut(s)	2155
PspGI	CCWGG	6 cut(s)	98, 533, 568, 1022, 1307, 2068
PspN4I	GGNNCC	6 cut(s)	27, 187, 611, 807, 1157, 2203
PspPI	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
PspXI	VCTCGAGB	2 cut(s)	279, 478
PstI	CTGCAG	1 cut(s)	1578
PsuI	RGATCY	2 cut(s)	398, 652
PvuII	CAGCTG	1 cut(s)	2141
RsaI	GTAC	7 cut(s)	27, 1016, 1157, 1456, 1677, 1895, 2213
RsaNI	GTAC	7 cut(s)	26, 1015, 1156, 1455, 1676, 1894, 2212
RseI	CAYNNNNRTG	2 cut(s)	773, 2255
SacII	CCGCGG	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	1551
SatI	GCNGC	6 cut(s)	250, 303, 999, 1704, 2139, 2241
Sau96I	GGNCC	6 cut(s)	185, 230, 483, 531, 720, 1092
ScaI	AGTACT	1 cut(s)	1456
SchI	GAGTC	4 cut(s)	821, 1091, 1204, 2225
ScrFI	CCNGG	6 cut(s)	100, 535, 570, 1024, 1309, 2070
SduI	GDGCHC	1 cut(s)	69
SfaNI	GCATC	4 cut(s)	122, 508, 1186, 2237
SfcI	CTRYAG	2 cut(s)	312, 1574
Sfr274I	CTCGAG	3 cut(s)	279, 478, 2024
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	3 cut(s)	185, 230, 720
SlaI	CTCGAG	3 cut(s)	279, 478, 2024
SmiMI	CAYNNNNRTG	2 cut(s)	773, 2255
SmlI	CTYRAG	4 cut(s)	190, 279, 478, 2024
SmoI	CTYRAG	4 cut(s)	190, 279, 478, 2024
SpeI	ACTAGT	2 cut(s)	335, 937
SseBI	AGGCCT	1 cut(s)	2235
SsiI	CCGC	5 cut(s)	247, 249, 1848, 1935, 2240
SspMI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
StuI	AGGCCT	1 cut(s)	2235
StyD4I	CCNGG	6 cut(s)	98, 533, 568, 1022, 1307, 2068
StyI	CCWWGG	4 cut(s)	522, 716, 1525, 1876
TaaI	ACNGT	8 cut(s)	54, 451, 606, 1059, 1253, 1271, 1898, 2051
TaiI	ACGT	7 cut(s)	98, 997, 1140, 1618, 1626, 1651, 2194
TaqI	TCGA	6 cut(s)	122, 280, 479, 1192, 2025, 2118
TatI	WGTACW	3 cut(s)	1014, 1454, 1893
TauI	GCSGC	2 cut(s)	252, 2243
TfiI	GAWTC	6 cut(s)	124, 143, 1365, 1838, 2065, 2175
TscAI	CASTG	4 cut(s)	611, 1276, 1614, 1637
TseFI	GTSAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
TseI	GCWGC	4 cut(s)	302, 998, 1703, 2138
Tsp45I	GTSAC	7 cut(s)	286, 1059, 1202, 1605, 1619, 2155, 2217
TspGWI	ACGGA	3 cut(s)	121, 222, 1377
TspRI	CASTG	4 cut(s)	611, 1276, 1614, 1637
Van91I	CCANNNNNTGG	1 cut(s)	528
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	3 cut(s)	185, 230, 720
VspI	ATTAAT	1 cut(s)	1227
XapI	RAATTY	1 cut(s)	133
XbaI	TCTAGA	1 cut(s)	815
XceI	RCATGY	1 cut(s)	778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XhoI	CTCGAG	3 cut(s)	279, 478, 2024
XmaJI	CCTAGG	1 cut(s)	1525
XmnI	GAANNNNTTC	2 cut(s)	324, 1755
XspI	CTAG	5 cut(s)	336, 816, 938, 1413, 1526
ZraI	GACGTC	1 cut(s)	1616
ZrmI	AGTACT	1 cut(s)	1456
Zsp2I	ATGCAT	3 cut(s)	1238, 1429, 2252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.