FvH4_4g25870

Belongs to the adaptor complexes medium subunit family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
27514084 .. 27518222
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25870.t2

Sequence Viewer

Length: 1107 bp
ATGGCAGGGGCAGTCTCGGCGCTGTTCCTCCTAGACATCAAAGGCCGCGTTCTCATCTGGCGCGACTATCGTGGCGACGTCTCCGCCGTCCAGGCCGAGCGCTTCTTCACTAAGCTCATCGACAAAGAGGTTGATGCGGAGTCGCACGATCCAGTAGTGAACGATAATGGCGTGAGCTACATGTTTCTGCAGCATAACAATGTGTACCTGATGGCGGCGTCTCGGCAGAACTGCAATGCTGCCAGCATTCTCTTCTTTTTGCACCGCATTGTTGATGTGTTCAAGCATTATTTCGAAGAGTTAGAGGAGGAGTCACTTAGGGATAACTTTGTGGTTGTGTATGAGTTGCTTGACGAAATGATGGACTTCGGTTACCCTCAATTTACTGAAGCGAAGATTTTAAGTGAATTTATCAAGACTGATGCTTACAGGATGGAAGTTAACCAGAGGCCTCCGATGGCCGTAACAAATGCAGTGTCTTGGCGCAGTGAAGGGATACGTTACAAGAAGAATGAGGTTTTTCTTGATGTGGTGGAGAGTGTTAATATACTCGTCAACAGCAATGGACAAATCATTAGGTCTGATGTTGTTGGTGCTTTGAAGATGAGAACTTATTTGAGTGGTATGCCTGAGTGTAAGCTGGGCTTAAATGATAGAGTGTTATTGGAGGCACAAGGCAGAACAACAAAGGGAAAGGCCATTGATTTGGAAGACATCAAATTTCATCAGTGTGTGCGTTTGGCCCGGTTTGAAAATGATCGGACTATATCCTTCGTTCCACCTGATGGAGCTTTTGATCTCATGACTTATAGACTCAGTACGCAGGTCAAACCGTTAATTTGGGTTGAAGCTCAAATTGAAAGGCATTCAAAAAGTCGCATTGAGATCCTGGTAAAAGCTCGAAGCCAGTTCAAAGAGCGCAGCACTGCAACAAATGTTGAGATTGAGGTACCTGTGCAAACGGATGCCACTAACCCAAATATTCGGACATCATTAGGATCTGCAACGTATGCACCTGAAAATGACGCGCTAATATGGAAGATAAGATCTTTTCCTGGTGGCAAGCTGAAGAATCAACTCCTGAAAGAAAAGCTCCTATACGTGTGA

Protein Analysis

369

Amino Acids

42.15

Weight (kDa)

6.15

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 5 - 127 2.2e-07 Clathrin adaptor complex small chain
Adap_comp_sub PF00928 159 - 426 1.9e-95 Adaptor complexes medium subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 814
Acc65I GGTACC 1 cut(s) 949
AccB1I GGYRCC 1 cut(s) 949
AccB7I CCANNNNNTGG 1 cut(s) 785
AccII CGCG 3 cut(s) 48, 63, 1028
AciI CCGC 5 cut(s) 46, 84, 137, 215, 265
AclWI GGATC 3 cut(s) 143, 880, 1006
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 2 cut(s) 407, 719
AcuI CTGAAG 2 cut(s) 408, 1088
AcyI GRCGYC 2 cut(s) 78, 218
AfaI GTAC 3 cut(s) 206, 820, 951
AfeI AGCGCT 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 214, 785
AflIII ACRYGT 2 cut(s) 180, 1101
AgsI TTSAA 7 cut(s) 283, 601, 752, 848, 860, 870, 913
AjnI CCWGG 3 cut(s) 90, 888, 1054
AluBI AGCT 8 cut(s) 115, 177, 640, 791, 851, 899, 1066, 1093
AluI AGCT 8 cut(s) 115, 177, 640, 791, 851, 899, 1066, 1093
Alw26I GTCTC 3 cut(s) 19, 85, 225
AlwI GGATC 3 cut(s) 143, 880, 1006
Aor51HI AGCGCT 1 cut(s) 101
AoxI GGCC 6 cut(s) 43, 93, 449, 459, 696, 741
ApeKI GCWGC 3 cut(s) 190, 239, 921
ApoI RAATTY 2 cut(s) 407, 719
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
Asp718I GGTACC 1 cut(s) 949
AspLEI GCGC 6 cut(s) 22, 63, 102, 486, 921, 1030
AspS9I GGNCC 1 cut(s) 742
AsuC2I CCSGG 1 cut(s) 745
AsuII TTCGAA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 949
BbsI GAAGAC 1 cut(s) 717
BbvI GCAGC 3 cut(s) 202, 226, 933
BccI CCATC 5 cut(s) 205, 355, 427, 451, 779
BceAI ACGGC 2 cut(s) 71, 446
BciT130I CCWGG 3 cut(s) 92, 890, 1056
BciVI GTATCC 1 cut(s) 489
BcnI CCSGG 1 cut(s) 745
BcoDI GTCTC 3 cut(s) 19, 85, 225
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 188
BfoI RGCGCY 2 cut(s) 23, 103
BfuAI ACCTGC 1 cut(s) 814
BfuI GTATCC 1 cut(s) 489
BglI GCCNNNNNGGC 1 cut(s) 92
BglII AGATCT 1 cut(s) 1046
BisI GCNGC 5 cut(s) 46, 191, 216, 240, 922
BlsI GCNGC 5 cut(s) 47, 192, 217, 241, 923
Bme1390I CCNGG 4 cut(s) 92, 745, 890, 1056
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 1 cut(s) 951
BmrFI CCNGG 4 cut(s) 92, 745, 890, 1056
BmsI GCATC 3 cut(s) 124, 412, 955
BpiI GAAGAC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 745
BsaAI YACGTR 1 cut(s) 1102
BsaHI GRCGYC 2 cut(s) 78, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 785
Bse1I ACTGG 2 cut(s) 152, 907
Bse3DI GCAATG 2 cut(s) 241, 568
BseBI CCWGG 3 cut(s) 92, 890, 1056
BseGI GGATG 2 cut(s) 438, 970
BseLI CCNNNNNNNGG 2 cut(s) 214, 785
BseMI GCAATG 2 cut(s) 241, 568
BseMII CTCAG 2 cut(s) 621, 829
BseNI ACTGG 2 cut(s) 152, 907
BseRI GAGGAG 2 cut(s) 320, 323
BseXI GCAGC 3 cut(s) 202, 226, 933
BseYI CCCAGC 1 cut(s) 640
Bsh1236I CGCG 3 cut(s) 48, 63, 1028
BshFI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
BshNI GGYRCC 1 cut(s) 949
BsiSI CCGG 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 214, 785
BsmAI GTCTC 3 cut(s) 19, 85, 225
BsmBI CGTCTC 2 cut(s) 85, 225
BsmI GAATGC 2 cut(s) 246, 865
BsnI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
Bsp119I TTCGAA 1 cut(s) 294
Bsp143I GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
BspACI CCGC 5 cut(s) 46, 84, 137, 215, 265
BspANI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
BspCNI CTCAG 2 cut(s) 622, 828
BspFNI CGCG 3 cut(s) 48, 63, 1028
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 951
BspMAI CTGCAG 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 814
BspPI GGATC 3 cut(s) 143, 880, 1006
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 949
BsrDI GCAATG 2 cut(s) 241, 568
BsrI ACTGG 2 cut(s) 152, 907
BssMI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
BssNI GRCGYC 2 cut(s) 78, 218
Bst2UI CCWGG 3 cut(s) 92, 890, 1056
Bst4CI ACNGT 1 cut(s) 834
Bst6I CTCTTC 2 cut(s) 257, 291
BstACI GRCGYC 2 cut(s) 78, 218
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBAI YACGTR 1 cut(s) 1102
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 244, 1064
BstDEI CTNAG 4 cut(s) 111, 317, 630, 815
BstEII GGTNACC 1 cut(s) 371
BstF5I GGATG 2 cut(s) 438, 970
BstFNI CGCG 3 cut(s) 48, 63, 1028
BstH2I RGCGCY 2 cut(s) 23, 103
BstHHI GCGC 6 cut(s) 22, 63, 102, 486, 921, 1030
BstKTI GATC 6 cut(s) 151, 760, 799, 888, 1001, 1049
BstMAI GTCTC 3 cut(s) 19, 85, 225
BstMBI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
BstMWI GCNNNNNNNGC 3 cut(s) 17, 92, 1010
BstNI CCWGG 3 cut(s) 92, 890, 1056
BstNSI RCATGY 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 371
BstSCI CCNGG 4 cut(s) 90, 743, 888, 1054
BstSFI CTRYAG 1 cut(s) 188
BstUI CGCG 3 cut(s) 48, 63, 1028
BstV1I GCAGC 3 cut(s) 202, 226, 933
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 3 cut(s) 885, 998, 1046
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 3 cut(s) 885, 998, 1046
BsuI GTATCC 1 cut(s) 489
BsuRI GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
BtsCI GGATG 2 cut(s) 438, 970
BtsI GCAGTG 3 cut(s) 480, 493, 924
BtsIMutI CAGTG 4 cut(s) 480, 493, 734, 924
BveI ACCTGC 1 cut(s) 814
Cac8I GCNNGC 2 cut(s) 244, 1064
CciI TCATGA 1 cut(s) 801
CfoI GCGC 6 cut(s) 22, 63, 102, 486, 921, 1030
Cfr13I GGNCC 1 cut(s) 742
CseI GACGC 2 cut(s) 207, 1034
Csp6I GTAC 3 cut(s) 205, 819, 950
CviAII CATG 2 cut(s) 181, 802
CviQI GTAC 3 cut(s) 205, 819, 950
DdeI CTNAG 4 cut(s) 111, 317, 630, 815
DpnI GATC 6 cut(s) 150, 759, 798, 887, 1000, 1048
DpnII GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 257, 291
EarI CTCTTC 2 cut(s) 257, 291
EciI GGCGGA 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 451
Eco47III AGCGCT 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 408, 1088
Eco91I GGTNACC 1 cut(s) 371
EcoO65I GGTNACC 1 cut(s) 371
EcoRII CCWGG 3 cut(s) 90, 888, 1054
Esp3I CGTCTC 2 cut(s) 85, 225
FaeI CATG 2 cut(s) 184, 805
FalI AAGNNNNNCTT 2 cut(s) 629, 661
FatI CATG 2 cut(s) 180, 801
Fnu4HI GCNGC 5 cut(s) 46, 191, 216, 240, 922
FokI GGATG 2 cut(s) 445, 977
Fsp4HI GCNGC 5 cut(s) 46, 191, 216, 240, 922
FspBI CTAG 1 cut(s) 32
GlaI GCGC 6 cut(s) 21, 62, 101, 485, 920, 1029
GluI GCNGC 5 cut(s) 46, 191, 216, 240, 922
GsaI CCCAGC 1 cut(s) 644
HaeII RGCGCY 2 cut(s) 23, 103
HaeIII GGCC 6 cut(s) 45, 95, 451, 461, 698, 743
HapII CCGG 1 cut(s) 745
HgaI GACGC 2 cut(s) 207, 1034
HhaI GCGC 6 cut(s) 22, 63, 102, 486, 921, 1030
Hin1I GRCGYC 2 cut(s) 78, 218
Hin1II CATG 2 cut(s) 184, 805
Hin6I GCGC 6 cut(s) 20, 61, 100, 484, 919, 1028
HinP1I GCGC 6 cut(s) 20, 61, 100, 484, 919, 1028
HincII GTYRAC 2 cut(s) 442, 556
HindII GTYRAC 2 cut(s) 442, 556
HinfI GANTC 4 cut(s) 140, 311, 813, 1072
HpaI GTTAAC 1 cut(s) 442
HpaII CCGG 1 cut(s) 745
Hpy166II GTNNAC 4 cut(s) 160, 205, 442, 556
Hpy188I TCNGA 4 cut(s) 456, 583, 762, 987
Hpy188III TCNNGA 4 cut(s) 415, 524, 802, 1081
Hpy8I GTNNAC 4 cut(s) 160, 205, 442, 556
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 485, 781
HpyCH4III ACNGT 1 cut(s) 834
HpyCH4IV ACGT 4 cut(s) 78, 499, 1007, 1101
HpyCH4V TGCA 8 cut(s) 190, 234, 262, 473, 929, 958, 1004, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 92, 1010
HpyF3I CTNAG 4 cut(s) 111, 317, 630, 815
HpySE526I ACGT 4 cut(s) 78, 499, 1007, 1101
Hsp92I GRCGYC 2 cut(s) 78, 218
Hsp92II CATG 2 cut(s) 184, 805
HspAI GCGC 6 cut(s) 20, 61, 100, 484, 919, 1028
KpnI GGTACC 1 cut(s) 953
KspAI GTTAAC 1 cut(s) 442
Kzo9I GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
LmnI GCTCC 2 cut(s) 788, 1098
Lsp1109I GCAGC 3 cut(s) 202, 226, 933
LweI GCATC 3 cut(s) 124, 412, 955
MaeI CTAG 1 cut(s) 32
MaeII ACGT 4 cut(s) 78, 499, 1007, 1101
MaeIII GTNAC 4 cut(s) 312, 371, 463, 500
MalI GATC 6 cut(s) 150, 759, 798, 887, 1000, 1048
MboI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
MboII GAAGA 9 cut(s) 97, 244, 308, 406, 520, 613, 722, 1051, 1081
MflI RGATCY 3 cut(s) 885, 998, 1046
MluCI AATT 5 cut(s) 380, 407, 719, 837, 855
MlyI GAGTC 3 cut(s) 149, 320, 807
MseI TTAA 5 cut(s) 401, 441, 543, 647, 836
MslI CAYNNNNRTG 2 cut(s) 198, 729
MspI CCGG 1 cut(s) 745
MspR9I CCNGG 4 cut(s) 92, 745, 890, 1056
Mva1269I GAATGC 2 cut(s) 246, 865
MvaI CCWGG 3 cut(s) 92, 890, 1056
MvnI CGCG 3 cut(s) 48, 63, 1028
MwoI GCNNNNNNNGC 3 cut(s) 17, 92, 1010
NciI CCSGG 1 cut(s) 745
NdeII GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
NlaIII CATG 2 cut(s) 184, 805
NlaIV GGNNCC 1 cut(s) 951
NmeAIII GCCGAG 2 cut(s) 121, 202
NmuCI GTSAC 1 cut(s) 312
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 294
PagI TCATGA 1 cut(s) 801
PceI AGGCCT 1 cut(s) 451
PciI ACATGT 1 cut(s) 180
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 168
PctI GAATGC 2 cut(s) 246, 865
PfeI GAWTC 1 cut(s) 1072
PflMI CCANNNNNTGG 1 cut(s) 785
PkrI GCNGC 5 cut(s) 47, 192, 217, 241, 923
PleI GAGTC 3 cut(s) 148, 319, 807
PpsI GAGTC 3 cut(s) 148, 319, 807
Ppu21I YACGTR 1 cut(s) 1102
PscI ACATGT 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 90, 888, 1054
PspEI GGTNACC 1 cut(s) 371
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 3 cut(s) 90, 888, 1054
PspN4I GGNNCC 1 cut(s) 951
PspPI GGNCC 1 cut(s) 742
PstI CTGCAG 1 cut(s) 192
PsuI RGATCY 3 cut(s) 885, 998, 1046
RsaI GTAC 3 cut(s) 206, 820, 951
RsaNI GTAC 3 cut(s) 205, 819, 950
RseI CAYNNNNRTG 2 cut(s) 198, 729
SaqAI TTAA 5 cut(s) 401, 441, 543, 647, 836
SatI GCNGC 5 cut(s) 46, 191, 216, 240, 922
Sau3AI GATC 6 cut(s) 148, 757, 796, 885, 998, 1046
Sau96I GGNCC 1 cut(s) 742
SchI GAGTC 3 cut(s) 149, 320, 807
ScrFI CCNGG 4 cut(s) 92, 745, 890, 1056
SfaNI GCATC 3 cut(s) 124, 412, 955
SfcI CTRYAG 1 cut(s) 188
SfuI TTCGAA 1 cut(s) 294
SmiMI CAYNNNNRTG 2 cut(s) 198, 729
Sse9I AATT 5 cut(s) 380, 407, 719, 837, 855
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 5 cut(s) 46, 84, 137, 215, 265
SspI AATATT 1 cut(s) 982
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 451
StyD4I CCNGG 4 cut(s) 90, 743, 888, 1054
TaaI ACNGT 1 cut(s) 834
TaiI ACGT 4 cut(s) 81, 502, 1010, 1104
TaqI TCGA 3 cut(s) 120, 294, 901
TasI AATT 5 cut(s) 380, 407, 719, 837, 855
TauI GCSGC 2 cut(s) 48, 218
TfiI GAWTC 1 cut(s) 1072
Tru1I TTAA 5 cut(s) 401, 441, 543, 647, 836
Tru9I TTAA 5 cut(s) 401, 441, 543, 647, 836
TscAI CASTG 4 cut(s) 480, 493, 734, 931
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 3 cut(s) 190, 239, 921
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 713
TspGWI ACGGA 1 cut(s) 977
TspRI CASTG 4 cut(s) 480, 493, 734, 931
Van91I CCANNNNNTGG 1 cut(s) 785
XapI RAATTY 2 cut(s) 407, 719
XceI RCATGY 1 cut(s) 184
XspI CTAG 1 cut(s) 32
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.