AT1G11240

Nucleolar protein 12 (25kDa)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011265
Physical Location & Seq
Reverse (-)
3766754 .. 3769799
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11240.1

Sequence Viewer

Length: 603 bp
ATGACGGGAGGCTTGCATAATGAGGAGGCGGGTTCACTGGCTACGCCGACTAGTGCTAGGCACATTGGGAAGAGAGCTCGCAAGAACAAAAGCCTCACCGTCTCTTTTGACGAGAAAGATCTCAAGGATTTTGTGACTGGTTTTCACAAGAGGAAGAAGAAAAGAAGAAAGGAAGCTCAGAAGCAGCAGGAGGAAGCTTTTAGGCGGAAACGAATCGAGGCCCGTAAGAATAGGAAATTGGAAGAGCTAATGGTTGCTGGTAATGGCGAGGATAATGAAGATGGGGAAGCTGAAGATGAAGTGGATGCAGAGGATGAAGAAGCAGAGCCTGATGCTTCAACATCTGCCACGACGATGTATGATACAGGCGAGTTGAAAGTAACTGTGACAACAAGTGAGATATCTCGTGAAGAGGAAGAGCCTATTCGCAAGGAGAAGACTCAATCAACAGAATCAGGTTCCACGGCCAAAGCTTCCACAAAGCAGCCTGTGCCTGTGAGGAAAACCAAACCCATGAAACAGAGCAGGAGACGGTCAACCACCAAAACTATGAAGAAAAGGGATAAGAAGAAACAAGCAAGAGGGATCAAGACTTCGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop25

Protein Analysis

200

Amino Acids

22.7

Weight (kDa)

9.76

Isoelectric Point (pI)

70.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop25 PF09805 24 - 150 5.2e-12 Nucleolar protein 12 (25kDa)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11240
fragaria_vesca FvH4_1g04320 FvH4_1g04320 FvH4_3g04070
malus_domestica MD05G1325000.v1.1 MD10G1302800.v1.1
prunus_persica Prupe.4G036300_v2.0.a1
pyrus_communis pycom05g29910 pycom10g25540
rosa_chinensis RchiOBHm_Chr5g0006551
rosa_laevigata RLG00000031398
rosa_multiflora Rmu_sc0008991.1_g000017
rosa_roxburghii Rroxscaffold_1G00069510
rosa_rugosa Rorug04G0422100 Rorug04G0435300
rosa_samantha Rh5AG049600 Rh5BG048900 Rh5CG057200 Rh5DG048200
rosa_wichuraiana Rw5G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 598
AciI CCGC 2 cut(s) 29, 205
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 1 cut(s) 465
AcuI CTGAAG 1 cut(s) 312
AgsI TTSAA 2 cut(s) 339, 376
AhlI ACTAGT 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 6 cut(s) 77, 176, 197, 247, 290, 473
AluI AGCT 6 cut(s) 77, 176, 197, 247, 290, 473
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 2 cut(s) 106, 523
AlwI GGATC 1 cut(s) 593
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 219, 465
ApeKI GCWGC 2 cut(s) 184, 484
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 88
BanII GRGCYC 1 cut(s) 79
BauI CACGAG 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 196, 496
BccI CCATC 1 cut(s) 275
BceAI ACGGC 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 106, 523
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 2 cut(s) 51, 57
BglII AGATCT 1 cut(s) 118
BisI GCNGC 2 cut(s) 185, 485
BlsI GCNGC 2 cut(s) 186, 486
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 460
BmsI GCATC 2 cut(s) 295, 322
BpiI GAAGAC 1 cut(s) 443
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 462
Bse1I ACTGG 2 cut(s) 42, 142
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 310, 319
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 42, 142
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 196, 496
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 2 cut(s) 221, 467
BsiHKAI GWGCWC 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 106, 523
BsmBI CGTCTC 2 cut(s) 106, 523
BsnI GGCC 2 cut(s) 221, 467
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 118, 585
Bsp68I TCGCGA 1 cut(s) 598
BspACI CCGC 2 cut(s) 29, 205
BspANI GGCC 2 cut(s) 221, 467
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 2 cut(s) 237, 411
BsrI ACTGG 2 cut(s) 42, 142
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 2 cut(s) 118, 585
BssSI CACGAG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 100, 385, 534
Bst6I CTCTTC 4 cut(s) 65, 237, 405, 411
BstAPI GCANNNNNTGC 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 14, 79
BstDEI CTNAG 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 310, 319
BstFNI CGCG 1 cut(s) 598
BstKTI GATC 2 cut(s) 121, 588
BstMAI GTCTC 2 cut(s) 106, 523
BstMBI GATC 2 cut(s) 118, 585
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 196, 496
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 2 cut(s) 221, 467
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 2 cut(s) 310, 319
BtsIMutI CAGTG 1 cut(s) 35
BtuMI TCGCGA 1 cut(s) 598
Cac8I GCNNGC 2 cut(s) 14, 79
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 220
CviAII CATG 1 cut(s) 514
DdeI CTNAG 1 cut(s) 177
DpnI GATC 2 cut(s) 120, 587
DpnII GATC 2 cut(s) 118, 585
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 4 cut(s) 65, 237, 405, 411
EarI CTCTTC 4 cut(s) 65, 237, 405, 411
EciI GGCGGA 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 77
EcoRV GATATC 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 79
Esp3I CGTCTC 2 cut(s) 106, 523
FaeI CATG 1 cut(s) 517
FaiI YATR 4 cut(s) 18, 360, 515, 551
FatI CATG 1 cut(s) 513
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 185, 485
FokI GGATG 2 cut(s) 317, 326
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 185, 485
FspBI CTAG 2 cut(s) 51, 57
GluI GCNGC 2 cut(s) 185, 485
HaeIII GGCC 2 cut(s) 221, 467
Hin1II CATG 1 cut(s) 517
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HindIII AAGCTT 2 cut(s) 195, 471
HinfI GANTC 3 cut(s) 213, 439, 452
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 35, 537
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 407, 589, 597
Hpy8I GTNNAC 2 cut(s) 35, 537
Hpy99I CGWCG 1 cut(s) 355
HpyCH4III ACNGT 3 cut(s) 100, 385, 534
HpyCH4V TGCA 2 cut(s) 16, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 517
Kzo9I GATC 2 cut(s) 118, 585
LguI GCTCTTC 2 cut(s) 237, 411
Lsp1109I GCAGC 2 cut(s) 196, 496
LweI GCATC 2 cut(s) 295, 322
MaeI CTAG 2 cut(s) 51, 57
MaeIII GTNAC 3 cut(s) 133, 379, 385
MalI GATC 2 cut(s) 120, 587
MboI GATC 2 cut(s) 118, 585
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 236
MlyI GAGTC 1 cut(s) 433
MslI CAYNNNNRTG 1 cut(s) 353
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 1 cut(s) 490
NdeII GATC 2 cut(s) 118, 585
NlaIII CATG 1 cut(s) 517
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 2 cut(s) 133, 385
NruI TCGCGA 1 cut(s) 598
PciSI GCTCTTC 2 cut(s) 237, 411
PfeI GAWTC 2 cut(s) 213, 452
PkrI GCNGC 2 cut(s) 186, 486
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp124BI GAGCTC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 1 cut(s) 220
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 118
RruI TCGCGA 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 353
SacI GAGCTC 1 cut(s) 79
SapI GCTCTTC 2 cut(s) 237, 411
SatI GCNGC 2 cut(s) 185, 485
Sau3AI GATC 2 cut(s) 118, 585
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 433
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 79, 178, 199, 249, 292, 460, 475
SfaNI GCATC 2 cut(s) 295, 322
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 1 cut(s) 236
SsiI CCGC 2 cut(s) 29, 205
SspMI CTAG 2 cut(s) 51, 57
SstI GAGCTC 1 cut(s) 79
TaaI ACNGT 3 cut(s) 100, 385, 534
TaqI TCGA 1 cut(s) 216
TasI AATT 1 cut(s) 236
TfiI GAWTC 2 cut(s) 213, 452
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 2 cut(s) 133, 385
TseI GCWGC 2 cut(s) 184, 484
Tsp45I GTSAC 2 cut(s) 133, 385
TspDTI ATGAA 5 cut(s) 291, 312, 330, 530, 566
TspRI CASTG 1 cut(s) 42
XspI CTAG 2 cut(s) 51, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.