Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011265

Physical Location & Seq

Genomic Coordinates Forward (+)

45142796 .. 45144211

Gene Structure 1416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1325000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCGGCGGGAAAGGTCGAAGAGGAAGCGATTCCGTCCGTAAATCCCCGAAGCCGTCACATAAAGAAGAGGGCTTTGAAAAACAAGGCTCTCGTCGTCACGTTTAACGAGAAAGAACTCAGCGATTTCGTGTCTGGGTTTCCCAAGAGGAAGAAGAAGAGGAGAAAGGAAGCTGAGAAGAAGCAAGGGGAGGCGCTGCGGCGGAAGCGTCTCGAGCTGCGCAAAAAGTGGTGGGATCGATACAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003824 GO:0004518 GO:0004527 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016787 GO:0016788 GO:0019843 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034471 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nop25

Protein Analysis

84

Amino Acids

9.88

Weight (kDa)

10.75

Isoelectric Point (pI)

72.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop25	PF09805	22 - 77	3.1e-10	Nucleolar protein 12 (25kDa)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11240
fragaria_vesca	FvH4_1g04320 FvH4_1g04320 FvH4_3g04070
malus_domestica	MD05G1325000.v1.1 MD10G1302800.v1.1
prunus_persica	Prupe.4G036300_v2.0.a1
pyrus_communis	pycom05g29910 pycom10g25540
rosa_chinensis	RchiOBHm_Chr5g0006551
rosa_laevigata	RLG00000031398
rosa_multiflora	Rmu_sc0008991.1_g000017
rosa_roxburghii	Rroxscaffold_1G00069510
rosa_rugosa	Rorug04G0422100 Rorug04G0435300
rosa_samantha	Rh5AG049600 Rh5BG048900 Rh5CG057200 Rh5DG048200
rosa_wichuraiana	Rw5G004970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	221
AciI	CCGC	4 cut(s)	5, 8, 199, 202
AclWI	GGATC	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	3 cut(s)	173, 217, 249
AluI	AGCT	3 cut(s)	173, 217, 249
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	243
AlwNI	CAGNNNCTG	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	212
ApeKI	GCWGC	3 cut(s)	196, 217, 246
Asp700I	GAANNNNTTC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	196, 222
AvaI	CYCGRG	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	183, 204
BceAI	ACGGC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	197
BisI	GCNGC	5 cut(s)	6, 197, 200, 218, 247
BlsI	GCNGC	5 cut(s)	7, 198, 201, 219, 248
BmeT110I	CYCGRG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	133, 165
BseRI	GAGGAG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	183, 204
BshVI	ATCGAT	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	4 cut(s)	5, 8, 199, 202
BspCNI	CTCAG	2 cut(s)	132, 166
BspDI	ATCGAT	1 cut(s)	238
BspPI	GGATC	1 cut(s)	243
BssMI	GATC	1 cut(s)	235
Bst6I	CTCTTC	3 cut(s)	15, 62, 152
BstDEI	CTNAG	2 cut(s)	119, 174
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	196, 222
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 214
BstV1I	GCAGC	2 cut(s)	183, 204
Bsu15I	ATCGAT	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	249
CfoI	GCGC	2 cut(s)	196, 222
ClaI	ATCGAT	1 cut(s)	238
CseI	GACGC	1 cut(s)	197
CviJI	RGCY	6 cut(s)	54, 74, 89, 173, 217, 249
CviKI_1	RGCY	6 cut(s)	54, 74, 89, 173, 217, 249
DdeI	CTNAG	2 cut(s)	119, 174
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	3 cut(s)	15, 62, 152
EarI	CTCTTC	3 cut(s)	15, 62, 152
EciI	GGCGGA	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	212
Esp3I	CGTCTC	1 cut(s)	215
FaiI	YATR	1 cut(s)	62
Fnu4HI	GCNGC	5 cut(s)	6, 197, 200, 218, 247
Fsp4HI	GCNGC	5 cut(s)	6, 197, 200, 218, 247
FspI	TGCGCA	1 cut(s)	221
GlaI	GCGC	2 cut(s)	195, 221
GluI	GCNGC	5 cut(s)	6, 197, 200, 218, 247
HaeII	RGCGCY	1 cut(s)	197
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	196, 222
Hin6I	GCGC	2 cut(s)	194, 220
HinP1I	GCGC	2 cut(s)	194, 220
HinfI	GANTC	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	212
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 214
HpyF3I	CTNAG	2 cut(s)	119, 174
HpySE526I	ACGT	1 cut(s)	101
HspAI	GCGC	2 cut(s)	194, 220
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	183, 204
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	56, 97
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	6 cut(s)	32, 79, 163, 166, 169, 190
MnlI	CCTC	5 cut(s)	16, 63, 141, 153, 184
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	205, 214
NdeII	GATC	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	56, 97
NsbI	TGCGCA	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	5 cut(s)	7, 198, 201, 219, 248
PstNI	CAGNNNCTG	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	5 cut(s)	6, 197, 200, 218, 247
Sau3AI	GATC	1 cut(s)	235
SetI	ASST	5 cut(s)	18, 104, 175, 219, 251
Sfr274I	CTCGAG	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SsiI	CCGC	4 cut(s)	5, 8, 199, 202
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	18, 213, 238
TauI	GCSGC	2 cut(s)	8, 202
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	56, 97
TseI	GCWGC	3 cut(s)	196, 217, 246
Tsp45I	GTSAC	2 cut(s)	56, 97
TspGWI	ACGGA	2 cut(s)	24, 28
XhoI	CTCGAG	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.