Rh5BG048900

Nucleolar protein 12 (25kDa)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011265
Physical Location & Seq
Reverse (-)
3887378 .. 3889707
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG048900.1

Sequence Viewer

Length: 477 bp
ATGGCAGCAGACAAGGCTGAAGACTTGGCGATTCCGGCCGCCGCTCCCCGCAGCCGTTACATCAACAAGAGGGCTCTTAAAAACAAGGCCGTCGCCGTCACTTTCAACGAGAAAGATCTCAGCGACTTTGTTTCTGGGTTTCACAAGAGGAAGAAGAAGAGGAGAAAGGAAGCTGAGAAGAAGCAAGGGGAGGCTTTAAGGCGGAAGCTTCTTGAGCTCCGCAAAAAGAGGAGACTAGAAAAGGAATTGGCTCTCTTTGGTGGAGCTCCCCCAGCTGCTGAGGGAGAAGCTGACGAGAATGATGAGGGAGATGTGAGCCAGGAGGAAGATGAAGAAAGTGAGCCAGATGCACCAATTTCAGGTATTTTCAAAAACCCTGTAATGCATACACGCCACTTTATTTGTCAGTACTTGAAGCTCATGGCTGACTATCTTGGTTACTCTAGTGCTGCTAAACCTTGCTGCCTATCACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nop25

Protein Analysis

158

Amino Acids

17.75

Weight (kDa)

8.9

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop25 PF09805 23 - 113 8.6e-13 Nucleolar protein 12 (25kDa)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11240
fragaria_vesca FvH4_1g04320 FvH4_1g04320 FvH4_3g04070
malus_domestica MD05G1325000.v1.1 MD10G1302800.v1.1
prunus_persica Prupe.4G036300_v2.0.a1
pyrus_communis pycom05g29910 pycom10g25540
rosa_chinensis RchiOBHm_Chr5g0006551
rosa_laevigata RLG00000031398
rosa_multiflora Rmu_sc0008991.1_g000017
rosa_roxburghii Rroxscaffold_1G00069510
rosa_rugosa Rorug04G0422100 Rorug04G0435300
rosa_samantha Rh5AG049600 Rh5BG048900 Rh5CG057200 Rh5DG048200
rosa_wichuraiana Rw5G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 5 cut(s) 39, 42, 49, 202, 220
AcoI YGGCCR 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 106, 370, 415
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 7 cut(s) 173, 208, 217, 266, 275, 290, 418
AluI AGCT 7 cut(s) 173, 208, 217, 266, 275, 290, 418
Alw21I GWGCWC 2 cut(s) 219, 268
Alw26I GTCTC 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 278
AoxI GGCC 2 cut(s) 36, 87
ApeKI GCWGC 5 cut(s) 5, 51, 275, 449, 462
BanII GRGCYC 3 cut(s) 76, 219, 268
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 2 cut(s) 219, 268
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 5 cut(s) 17, 63, 262, 436, 449
BceAI ACGGC 3 cut(s) 39, 74, 80
BciT130I CCWGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 2 cut(s) 236, 444
BfmI CTRYAG 1 cut(s) 473
BglII AGATCT 1 cut(s) 115
BisI GCNGC 7 cut(s) 6, 39, 42, 52, 276, 450, 463
BlsI GCNGC 7 cut(s) 7, 40, 43, 53, 277, 451, 464
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 1 cut(s) 320
BmrFI CCNGG 1 cut(s) 320
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMII CTCAG 3 cut(s) 133, 165, 270
BseRI GAGGAG 2 cut(s) 175, 244
BseX3I CGGCCG 1 cut(s) 36
BseXI GCAGC 5 cut(s) 17, 63, 262, 436, 449
BseYI CCCAGC 1 cut(s) 271
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 38, 89
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 2 cut(s) 219, 268
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 226
BsnI GGCC 2 cut(s) 38, 89
Bsp1286I GDGCHC 3 cut(s) 76, 219, 268
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 5 cut(s) 39, 42, 49, 202, 220
BspANI GGCC 2 cut(s) 38, 89
BspCNI CTCAG 3 cut(s) 132, 166, 271
BsrBI CCGCTC 1 cut(s) 44
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 474
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 119, 174, 279
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 4 cut(s) 14, 35, 214, 272
BstNI CCWGG 1 cut(s) 320
BstSCI CCNGG 1 cut(s) 318
BstSFI CTRYAG 1 cut(s) 473
BstV1I GCAGC 5 cut(s) 17, 63, 262, 436, 449
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BstZI CGGCCG 1 cut(s) 36
BsuRI GGCC 2 cut(s) 38, 89
BtsIMutI CAGTG 1 cut(s) 470
CaiI CAGNNNCTG 1 cut(s) 278
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 2 cut(s) 383, 418
CviAII CATG 1 cut(s) 421
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 119, 174, 279
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 36
EagI CGGCCG 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EciI GGCGGA 1 cut(s) 217
Ecl136II GAGCTC 2 cut(s) 217, 266
EclXI CGGCCG 1 cut(s) 36
Eco24I GRGCYC 3 cut(s) 76, 219, 268
Eco52I CGGCCG 1 cut(s) 36
Eco53kI GAGCTC 2 cut(s) 217, 266
Eco57I CTGAAG 1 cut(s) 39
EcoICRI GAGCTC 2 cut(s) 217, 266
EcoRII CCWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 3 cut(s) 76, 219, 268
FaeI CATG 1 cut(s) 424
FaiI YATR 2 cut(s) 387, 422
FatI CATG 1 cut(s) 420
FauI CCCGC 1 cut(s) 56
Fnu4HI GCNGC 7 cut(s) 6, 39, 42, 52, 276, 450, 463
FriOI GRGCYC 3 cut(s) 76, 219, 268
Fsp4HI GCNGC 7 cut(s) 6, 39, 42, 52, 276, 450, 463
FspBI CTAG 2 cut(s) 236, 444
GluI GCNGC 7 cut(s) 6, 39, 42, 52, 276, 450, 463
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 2 cut(s) 38, 89
HapII CCGG 1 cut(s) 35
Hin1II CATG 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 206
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 35
Hpy188III TCNNGA 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4V TGCA 2 cut(s) 350, 385
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 35, 214, 272
HpyF3I CTNAG 3 cut(s) 119, 174, 279
Hsp92II CATG 1 cut(s) 424
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 4 cut(s) 49, 222, 263, 271
LpnPI CCDG 8 cut(s) 48, 120, 285, 305, 332, 345, 357, 390
Lsp1109I GCAGC 5 cut(s) 17, 63, 262, 436, 449
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 236, 444
MaeIII GTNAC 3 cut(s) 56, 97, 437
MalI GATC 1 cut(s) 117
MbiI CCGCTC 1 cut(s) 44
MboI GATC 1 cut(s) 115
MboII GAAGA 7 cut(s) 32, 163, 166, 169, 190, 338, 344
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 3 cut(s) 76, 219, 268
MluCI AATT 2 cut(s) 245, 354
MnlI CCTC 8 cut(s) 63, 141, 153, 184, 222, 274, 298, 316
Mph1103I ATGCAT 1 cut(s) 387
MseI TTAA 2 cut(s) 78, 197
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 320
MwoI GCNNNNNNNGC 4 cut(s) 14, 35, 214, 272
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 424
NmuCI GTSAC 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 387
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 7 cut(s) 7, 40, 43, 53, 277, 451, 464
Psp124BI GAGCTC 2 cut(s) 219, 268
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 1 cut(s) 318
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
SacI GAGCTC 2 cut(s) 219, 268
SaqAI TTAA 2 cut(s) 78, 197
SatI GCNGC 7 cut(s) 6, 39, 42, 52, 276, 450, 463
Sau3AI GATC 1 cut(s) 115
ScaI AGTACT 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 3 cut(s) 76, 219, 268
SetI ASST 9 cut(s) 175, 210, 219, 268, 277, 292, 364, 420, 460
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 2 cut(s) 245, 354
SsiI CCGC 5 cut(s) 39, 42, 49, 202, 220
SspMI CTAG 2 cut(s) 236, 444
SstI GAGCTC 2 cut(s) 219, 268
StyD4I CCNGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 474
TasI AATT 2 cut(s) 245, 354
TatI WGTACW 1 cut(s) 408
TauI GCSGC 2 cut(s) 41, 44
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 2 cut(s) 78, 197
Tru9I TTAA 2 cut(s) 78, 197
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 5 cut(s) 5, 51, 275, 449, 462
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 345
TspRI CASTG 1 cut(s) 477
XspI CTAG 2 cut(s) 236, 444
ZrmI AGTACT 1 cut(s) 410
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.