Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011265

Physical Location & Seq

Genomic Coordinates Forward (+)

58189991 .. 58192319

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0422100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCCTTGATCTTCAAGATCCTTTGGTTGCCTACCGCTTTTACCGTGAAGGAAAATAACAACCTCTCACTCATTGAAATTGGGCATCCATATCAATCAATATACGTGGCATCAAATCTCAAAAATGTTCTCGAAGGAAGAAGAATTTTTGAAGTTAATGACAGACGAAGAATTGATGAATCTGCAAATTACTGCTCTACAAGAGATGGGAAGAAGAAGACGCCGGCAAGAGATGCGAATTCAATTATGGATATTACGGTTTTAGTTGAAAAGGTTGATGAAAGTGTCAAGGTTACAGTTATTGAGGAAGACGACGAGTACTGGTTTCTTCCTCCCTCCAAAGTTACTAACAAGTTGGGTGATGATTCCATCTTAAAGGCCTTAAGGCCTGTAACAGCCATGCCATTACATATGTTCCACATTATGACACCCTTGGAGCTAAGGATGAAGCCGTGTTATGTAGTTTTTGTGGGTCTCTCAGCTGGTACTAAATCTTGTATGTACAAAGTTTTTCAAGCTGTAAGTGTTTTGCTCAGTTCGATGGTTTTTGCTCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nop25

Protein Analysis

186

Amino Acids

21.15

Weight (kDa)

8.38

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11240
fragaria_vesca	FvH4_1g04320 FvH4_1g04320 FvH4_3g04070
malus_domestica	MD05G1325000.v1.1 MD10G1302800.v1.1
prunus_persica	Prupe.4G036300_v2.0.a1
pyrus_communis	pycom05g29910 pycom10g25540
rosa_chinensis	RchiOBHm_Chr5g0006551
rosa_laevigata	RLG00000031398
rosa_multiflora	Rmu_sc0008991.1_g000017
rosa_roxburghii	Rroxscaffold_1G00069510
rosa_rugosa	Rorug04G0422100 Rorug04G0435300
rosa_samantha	Rh5AG049600 Rh5BG048900 Rh5CG057200 Rh5DG048200
rosa_wichuraiana	Rw5G004970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	144, 238
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	3 cut(s)	320, 487, 503
AflII	CTTAAG	1 cut(s)	382
AgsI	TTSAA	6 cut(s)	16, 77, 152, 243, 269, 515
AluBI	AGCT	3 cut(s)	439, 482, 518
AluI	AGCT	3 cut(s)	439, 482, 518
Alw26I	GTCTC	1 cut(s)	479
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	378, 386
ApoI	RAATTY	2 cut(s)	144, 238
AsuHPI	GGTGA	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	224, 315
BccI	CCATC	3 cut(s)	200, 377, 535
BceAI	ACGGC	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	479
BfrI	CTTAAG	1 cut(s)	382
BlpI	GCTNAGC	1 cut(s)	552
BmcAI	AGTACT	1 cut(s)	320
BmsI	GCATC	3 cut(s)	94, 119, 223
BpiI	GAAGAC	2 cut(s)	224, 315
Bpu10I	CCTNAGC	1 cut(s)	440
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaAI	YACGTR	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	479
BsaJI	CCNNGG	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	2 cut(s)	85, 450
BseMII	CTCAG	2 cut(s)	492, 547
BseNI	ACTGG	1 cut(s)	326
BshFI	GGCC	2 cut(s)	380, 388
BsiSI	CCGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	479
BsnI	GGCC	2 cut(s)	380, 388
Bso31I	GGTCTC	1 cut(s)	479
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	9, 18
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	380, 388
BspCNI	CTCAG	2 cut(s)	491, 546
BspPI	GGATC	1 cut(s)	13
BspTI	CTTAAG	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	479
BsrFI	RCCGGY	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	9, 18
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	46, 259, 298
BstACI	GRCGYC	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	382
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	4 cut(s)	440, 478, 533, 552
BstF5I	GGATG	2 cut(s)	85, 450
BstKTI	GATC	2 cut(s)	12, 21
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	2 cut(s)	9, 18
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstV2I	GAAGAC	2 cut(s)	224, 315
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	380, 388
BtsCI	GGATG	2 cut(s)	85, 450
Cac8I	GCNNGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	223
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	319, 486, 502
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	7 cut(s)	380, 388, 398, 439, 451, 482, 518
CviKI_1	RGCY	7 cut(s)	380, 388, 398, 439, 451, 482, 518
CviQI	GTAC	3 cut(s)	319, 486, 502
DdeI	CTNAG	4 cut(s)	440, 478, 533, 552
DpnI	GATC	2 cut(s)	11, 20
DpnII	GATC	2 cut(s)	9, 18
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	2 cut(s)	380, 388
Eco31I	GGTCTC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	403
FaiI	YATR	9 cut(s)	91, 103, 248, 401, 411, 413, 425, 459, 500
FatI	CATG	1 cut(s)	399
FauNDI	CATATG	1 cut(s)	411
FokI	GGATG	2 cut(s)	72, 457
HaeIII	GGCC	2 cut(s)	380, 388
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	229
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	403
HinfI	GANTC	2 cut(s)	179, 365
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	371
Hpy188III	TCNNGA	2 cut(s)	16, 131
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	43, 128
HpyCH4III	ACNGT	3 cut(s)	46, 259, 298
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	4 cut(s)	440, 478, 533, 552
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	403
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	9, 18
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	4 cut(s)	237, 307, 402, 468
LweI	GCATC	3 cut(s)	94, 119, 223
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	292, 343, 391
MalI	GATC	2 cut(s)	11, 20
MboI	GATC	2 cut(s)	9, 18
MboII	GAAGA	9 cut(s)	4, 150, 153, 180, 223, 226, 229, 320, 320
MflI	RGATCY	1 cut(s)	18
MluCI	AATT	6 cut(s)	78, 144, 171, 187, 238, 243
MnlI	CCTC	4 cut(s)	74, 298, 342, 346
MroNI	GCCGGC	1 cut(s)	223
MseI	TTAA	3 cut(s)	156, 374, 383
MspA1I	CMGCKG	1 cut(s)	482
MspCI	CTTAAG	1 cut(s)	382
MspI	CCGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	233
NaeI	GCCGGC	1 cut(s)	225
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	2 cut(s)	9, 18
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	1 cut(s)	403
PceI	AGGCCT	2 cut(s)	380, 388
PdiI	GCCGGC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	179, 365
Ppu21I	YACGTR	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	320, 487, 503
RsaNI	GTAC	3 cut(s)	319, 486, 502
SaqAI	TTAA	3 cut(s)	156, 374, 383
Sau3AI	GATC	2 cut(s)	9, 18
ScaI	AGTACT	1 cut(s)	320
SetI	ASST	7 cut(s)	66, 108, 276, 294, 441, 484, 520
SfaNI	GCATC	3 cut(s)	94, 119, 223
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	6 cut(s)	78, 144, 171, 187, 238, 243
SseBI	AGGCCT	2 cut(s)	380, 388
SsiI	CCGC	1 cut(s)	36
StuI	AGGCCT	2 cut(s)	380, 388
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	46, 259, 298
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	132, 539
TasI	AATT	6 cut(s)	78, 144, 171, 187, 238, 243
TatI	WGTACW	2 cut(s)	318, 501
TfiI	GAWTC	2 cut(s)	179, 365
Tru1I	TTAA	3 cut(s)	156, 374, 383
Tru9I	TTAA	3 cut(s)	156, 374, 383
TspDTI	ATGAA	3 cut(s)	192, 294, 461
Vha464I	CTTAAG	1 cut(s)	382
XapI	RAATTY	2 cut(s)	144, 238
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.