AT1G11560

dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013991
Physical Location & Seq
Forward (+)
3881627 .. 3882819
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11560.1

Sequence Viewer

Length: 1032 bp
ATGGTGATTCAAACGAATCTCTCATATCGTTTCTTCATCTTAATTGTGTTTTTATTTACCCTAGCGAATCCAAAATCAGATTCAGATCTCAAAAACGAACTAGTCTCCCTCCGATCAACCGCCGAATCAGGCGTGATCTCCTTCAACAACGACGACGTTTCCAAATTCATAACCTCCGTATCCACTCCTAGACCTTACTCACTCATCATCTTCTTCGACGCCGTTCATCTCCACGGCAATAGCCAGCTACGTCTTCCAGAGTTCCGCCGCGAATTCAGACTCGTCTCCGCCACTTTCATCACCAACAACAACAATGAATCTAACGGCACAAAGCTCTTCTTCTGCGAGATCGAATCAACTCACTCCGAGGCTTCTTTCCGCCGCTTCGCCGTCGAGTCACTACCACACATTTCCCTCGTTAGCCCCACGACAGAGAATTTAACAGAATCAGATCAAATGGACGGTGGAGATTTCACTGGATTAGCCGAATCAATGGCAGAGTTCGTCGAACGTCAAACAAAACTCACCGTTTGTTCAATCCAACGACCACCACTCATATCAAAGACACAAATCGGAATCATCGTTGCTATAATCATAATCTCGACTCCGATTCTCATCAAGAAGATTCTAAAAGGAGAAACACTTCTCCATGACCATAGAATCTGGTTAGTTGGCGCGGTTTTCGTCTACTTCTTCAGCGTCTCGGGGACAATGCATAACATCATTAGAGAAATGCCAATGTATATCAAAGATTATGAAGATTCAAGTAAGTTTGTTTTCTTTATAGAAGAATCAGAGATGCAGCTTGGAGCAGAAGGTTTCTTTGTAGGGTTTTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACTAATGTAGTTGTACGAGTCAAGAAACTCGATGAGCAAAGGATGGCTATGCTTTTGGCTCTGTCTATATCGTTTTGGGCTGTGAGGAAAGTTGTTTACTTGGATAATTGGAAGACTGGTTATGAAATTTACCCATATTGGCCATCGAGTTGGCGGGGATGA

Protein Analysis

343

Amino Acids

39.16

Weight (kDa)

6.02

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 33 - 332 2.4e-69 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11560 AT1G61790 AT1G61790
fragaria_vesca FvH4_3g02600
malus_domestica MD00G1180300.v1.1 MD10G1315200.v1.1
prunus_persica Prupe.4G025400_v2.0.a1
pyrus_communis pycom05g31100 pycom10g26740
rosa_multiflora Rmu_co8083490.1_g000001 Rmu_sc0011733.1_g000004 Rmu_sc0019391.1_g000006
rosa_roxburghii Rroxscaffold_1G00072070
rosa_rugosa Rorug04G0407700
rosa_samantha Rh5BG033800 Rh5DG034000
rosa_wichuraiana Rw5G003230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 687, 839
AccII CGCG 2 cut(s) 270, 677
AciI CCGC 8 cut(s) 120, 265, 268, 288, 379, 382, 677, 1024
AcoI YGGCCR 1 cut(s) 1010
AcsI RAATTY 4 cut(s) 164, 272, 436, 996
AcuI CTGAAG 1 cut(s) 679
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 885
AgsI TTSAA 4 cut(s) 11, 145, 537, 765
AhlI ACTAGT 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 3 cut(s) 247, 334, 805
AluI AGCT 3 cut(s) 247, 334, 805
Alw26I GTCTC 3 cut(s) 109, 289, 706
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 1 cut(s) 1010
ApeKI GCWGC 1 cut(s) 802
ApoI RAATTY 4 cut(s) 164, 272, 436, 996
Asp700I GAANNNNTTC 1 cut(s) 642
AspLEI GCGC 1 cut(s) 677
AsuHPI GGTGA 3 cut(s) 16, 292, 517
AvaI CYCGRG 1 cut(s) 703
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BalI TGGCCA 1 cut(s) 1012
BbsI GAAGAC 2 cut(s) 245, 989
BbvI GCAGC 1 cut(s) 814
BccI CCATC 2 cut(s) 907, 1021
BceAI ACGGC 4 cut(s) 206, 250, 340, 374
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 3 cut(s) 109, 289, 706
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 3 cut(s) 62, 101, 189
BfuI GTATCC 1 cut(s) 190
BglII AGATCT 1 cut(s) 85
BisI GCNGC 3 cut(s) 268, 382, 803
BlsI GCNGC 3 cut(s) 269, 383, 804
BmeT110I CYCGRG 1 cut(s) 703
BmsI GCATC 1 cut(s) 789
BpiI GAAGAC 2 cut(s) 245, 989
BsaBI GATNNNNATC 2 cut(s) 84, 614
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 232, 366
Bse1I ACTGG 2 cut(s) 481, 991
Bse8I GATNNNNATC 2 cut(s) 84, 614
BseDI CCNNGG 2 cut(s) 232, 366
BseGI GGATG 1 cut(s) 918
BseJI GATNNNNATC 2 cut(s) 84, 614
BseNI ACTGG 2 cut(s) 481, 991
BseXI GCAGC 1 cut(s) 814
Bsh1236I CGCG 2 cut(s) 270, 677
BshFI GGCC 1 cut(s) 1012
BsiHKCI CYCGRG 1 cut(s) 703
BslFI GGGAC 1 cut(s) 721
BsmAI GTCTC 3 cut(s) 109, 289, 706
BsmBI CGTCTC 2 cut(s) 289, 706
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 1 cut(s) 1012
BsoBI CYCGRG 1 cut(s) 703
Bsp143I GATC 5 cut(s) 85, 113, 135, 348, 451
BspACI CCGC 8 cut(s) 120, 265, 268, 288, 379, 382, 677, 1024
BspANI GGCC 1 cut(s) 1012
BspFNI CGCG 2 cut(s) 270, 677
BspQI GCTCTTC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 481, 991
BssECI CCNNGG 2 cut(s) 232, 366
BssMI GATC 5 cut(s) 85, 113, 135, 348, 451
BssNAI GTATAC 1 cut(s) 840
BssNI GRCGYC 1 cut(s) 219
Bst1107I GTATAC 1 cut(s) 840
Bst4CI ACNGT 3 cut(s) 464, 529, 844
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 219
BstC8I GCNNGC 1 cut(s) 245
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 918
BstFNI CGCG 2 cut(s) 270, 677
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 5 cut(s) 88, 116, 138, 351, 454
BstMAI GTCTC 3 cut(s) 109, 289, 706
BstMBI GATC 5 cut(s) 85, 113, 135, 348, 451
BstUI CGCG 2 cut(s) 270, 677
BstV1I GCAGC 1 cut(s) 814
BstV2I GAAGAC 2 cut(s) 245, 989
BstX2I RGATCY 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 1020
BstYI RGATCY 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 840
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 1012
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 918
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 1 cut(s) 677
CseI GACGC 2 cut(s) 227, 688
Csp6I GTAC 1 cut(s) 884
CviAII CATG 1 cut(s) 650
CviQI GTAC 1 cut(s) 884
DpnI GATC 5 cut(s) 87, 115, 137, 350, 453
DpnII GATC 5 cut(s) 85, 113, 135, 348, 451
EaeI YGGCCR 1 cut(s) 1010
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
EciI GGCGGA 3 cut(s) 254, 277, 368
Eco57I CTGAAG 1 cut(s) 679
Eco88I CYCGRG 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 717
Esp3I CGTCTC 2 cut(s) 289, 706
FaeI CATG 1 cut(s) 653
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 721
FatI CATG 1 cut(s) 649
FauI CCCGC 1 cut(s) 1017
FblI GTMKAC 2 cut(s) 687, 839
Fnu4HI GCNGC 3 cut(s) 268, 382, 803
FokI GGATG 1 cut(s) 925
Fsp4HI GCNGC 3 cut(s) 268, 382, 803
FspBI CTAG 3 cut(s) 62, 101, 189
GlaI GCGC 1 cut(s) 676
GluI GCNGC 3 cut(s) 268, 382, 803
HaeIII GGCC 1 cut(s) 1012
HgaI GACGC 2 cut(s) 227, 688
HhaI GCGC 1 cut(s) 677
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 653
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HphI GGTGA 3 cut(s) 16, 292, 517
Hpy166II GTNNAC 3 cut(s) 688, 840, 967
Hpy188I TCNGA 9 cut(s) 79, 85, 113, 278, 367, 451, 575, 609, 796
Hpy188III TCNNGA 4 cut(s) 257, 601, 619, 892
Hpy8I GTNNAC 3 cut(s) 688, 840, 967
Hpy99I CGWCG 5 cut(s) 155, 158, 221, 395, 509
HpyAV CCTTC 2 cut(s) 151, 809
HpyCH4III ACNGT 3 cut(s) 464, 529, 844
HpyCH4IV ACGT 3 cut(s) 156, 250, 511
HpyCH4V TGCA 2 cut(s) 715, 802
HpySE526I ACGT 3 cut(s) 156, 250, 511
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 653
HspAI GCGC 1 cut(s) 675
Kzo9I GATC 5 cut(s) 85, 113, 135, 348, 451
LguI GCTCTTC 1 cut(s) 341
LmnI GCTCC 1 cut(s) 809
LpnPI CCDG 6 cut(s) 114, 257, 270, 462, 649, 972
Lsp1109I GCAGC 1 cut(s) 814
LweI GCATC 1 cut(s) 789
MaeI CTAG 3 cut(s) 62, 101, 189
MaeII ACGT 3 cut(s) 156, 250, 511
MaeIII GTNAC 2 cut(s) 396, 868
MalI GATC 5 cut(s) 87, 115, 137, 350, 453
MboI GATC 5 cut(s) 85, 113, 135, 348, 451
MflI RGATCY 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 1012
MluCI AATT 6 cut(s) 42, 164, 272, 436, 976, 996
MluNI TGGCCA 1 cut(s) 1012
MlyI GAGTC 4 cut(s) 273, 404, 598, 897
MmeI TCCRAC 2 cut(s) 565, 829
MnlI CCTC 5 cut(s) 119, 184, 361, 425, 948
Mox20I TGGCCA 1 cut(s) 1012
Mph1103I ATGCAT 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 642
MscI TGGCCA 1 cut(s) 1012
MseI TTAA 2 cut(s) 41, 440
Msp20I TGGCCA 1 cut(s) 1012
MvnI CGCG 2 cut(s) 270, 677
NdeII GATC 5 cut(s) 85, 113, 135, 348, 451
NlaIII CATG 1 cut(s) 653
NmuCI GTSAC 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 341
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PdmI GAANNNNTTC 1 cut(s) 642
PkrI GCNGC 3 cut(s) 269, 383, 804
PleI GAGTC 4 cut(s) 273, 403, 598, 896
PpsI GAGTC 4 cut(s) 273, 403, 598, 896
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 1 cut(s) 885
RsaNI GTAC 1 cut(s) 884
SapI GCTCTTC 1 cut(s) 341
SaqAI TTAA 2 cut(s) 41, 440
SatI GCNGC 3 cut(s) 268, 382, 803
Sau3AI GATC 5 cut(s) 85, 113, 135, 348, 451
SchI GAGTC 4 cut(s) 273, 404, 598, 897
SetI ASST 9 cut(s) 159, 176, 196, 249, 253, 336, 514, 807, 820
SfaNI GCATC 1 cut(s) 789
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 6 cut(s) 42, 164, 272, 436, 976, 996
SsiI CCGC 8 cut(s) 120, 265, 268, 288, 379, 382, 677, 1024
SspMI CTAG 3 cut(s) 62, 101, 189
TaaI ACNGT 3 cut(s) 464, 529, 844
TaiI ACGT 3 cut(s) 159, 253, 514
TaqI TCGA 7 cut(s) 216, 351, 393, 507, 602, 900, 1016
TasI AATT 6 cut(s) 42, 164, 272, 436, 976, 996
TauI GCSGC 2 cut(s) 270, 384
Tru1I TTAA 2 cut(s) 41, 440
Tru9I TTAA 2 cut(s) 41, 440
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 1 cut(s) 396
TseI GCWGC 1 cut(s) 802
Tsp45I GTSAC 1 cut(s) 396
TspDTI ATGAA 7 cut(s) 25, 157, 215, 286, 330, 771, 1008
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 481
XapI RAATTY 4 cut(s) 164, 272, 436, 996
XmiI GTMKAC 2 cut(s) 687, 839
XmnI GAANNNNTTC 1 cut(s) 642
XspI CTAG 3 cut(s) 62, 101, 189
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.