Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013991

Physical Location & Seq

Genomic Coordinates Reverse (-)

3002889 .. 3004349

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGGAAAACCCCAACCCTAACAATGTCTCCAATTCCCAAACTACCCCTCTCCCTCGTCCTCGTCTCCGCCCTCCTCTTCCTCACCGCCTCCTCCCAATCGGACCTCGTCTCGGAGCTCCAATCCCTCCAATCCCGATCCAAATCCGGCGTGATCCGCTTCACCGACCAATCCGTCTCCCGCTTCCTCACCTCCGCCCAAACCCCCCGCCCCTACTCCCTCCTCATCTTCTTCGACGCCGCCAAGCTCCACGAGAAACCGGAGCTCCACCTCTCCGACCTCCGCCACGAGTTCTCCCTCGTCGCCGCCTCCTTCATCGCCAACAACGCCGACGAAGCCTCCCCCTCCCACTCCAAGCTCTTCTTCGCCGACATCGAATTCCAGGACTCGCAGAACAGCTTCGCCCAATTCGGCGTCAACTCCCTGCCCCACATCCGCCTCGTCGGGCCGGGTCAGAGCCCGAAAGATTCCGTCCAGATGGAGCAGGGCGATTTCGCCAGACTCGCCGAGTCAATGTCCGAGTTCATCGAATCCAAGACCAAGCTAGTCGTCGGCCCAATCCAACGCCCGCCGATGTTCTCCCGGAACCAGATCATCCTCGCCGTCATGGCGTGGCTGATCTGGACGCCGTTCATTATCAAGAAGATTATCAACGGCAAGACTCTGCTTCACGACCCCAGGGTTTGGTTGACCGGGGCGGTTTTCGTCTACTTCTTCAGTGTCTCCGGCGCTATGCACAACATTATCAGGAAAATGCCGATGTTCTTGGCCGACCGGAACGATCCGACGAAGCTGGTTTTCTTTTACCAGGGATCGGGAATGCAGCTCGGAACAGAGGGGTTTGCTATCGGGTTCTTGTATACTATCGTCGGCTTGCTGCTTGCGTTTCTTACCAGGGTGCTTGTGAGGGTTAGGAATGTGAATGCGCAGCGGATTGTCATGCTTGTGGCGCTGGTGGTTTCGTTTTGGGCTGTGAAGAAGGTGGTGTATTTGGATAACTGGAAGACCGGGTATGGTATCCATGCTTTCTGGCCTTCGAGCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0031984 GO:0032501 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

OST3_OST6

Protein Analysis

349

Amino Acids

39.22

Weight (kDa)

9.8

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST3_OST6	PF04756	39 - 338	1.4e-77	OST3 / OST6 family, transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11560 AT1G61790 AT1G61790
fragaria_vesca	FvH4_3g02600
malus_domestica	MD00G1180300.v1.1 MD10G1315200.v1.1
prunus_persica	Prupe.4G025400_v2.0.a1
pyrus_communis	pycom05g31100 pycom10g26740
rosa_multiflora	Rmu_co8083490.1_g000001 Rmu_sc0011733.1_g000004 Rmu_sc0019391.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072070
rosa_rugosa	Rorug04G0407700
rosa_samantha	Rh5BG033800 Rh5DG034000
rosa_wichuraiana	Rw5G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc16I	TGCGCA	1 cut(s)	927
AccB7I	CCANNNNNTGG	1 cut(s)	684
AccI	GTMKAC	2 cut(s)	708, 860
AclWI	GGATC	4 cut(s)	132, 148, 776, 820
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	700
AcyI	GRCGYC	3 cut(s)	237, 414, 626
AfiI	CCNNNNNNNGG	3 cut(s)	112, 684, 814
AjnI	CCWGG	4 cut(s)	381, 677, 807, 893
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	9 cut(s)	118, 247, 265, 358, 399, 544, 793, 826, 1041
AluI	AGCT	9 cut(s)	118, 247, 265, 358, 399, 544, 793, 826, 1041
Alw21I	GWGCWC	2 cut(s)	120, 267
Alw26I	GTCTC	5 cut(s)	33, 70, 115, 181, 727
AlwI	GGATC	4 cut(s)	132, 148, 776, 820
AoxI	GGCC	4 cut(s)	446, 553, 768, 1031
ApeKI	GCWGC	3 cut(s)	823, 877, 928
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	3 cut(s)	731, 928, 952
AspS9I	GGNCC	3 cut(s)	103, 446, 554
AsuC2I	CCSGG	4 cut(s)	450, 583, 694, 1009
AsuHPI	GGTGA	3 cut(s)	76, 154, 181
AvaII	GGWCC	1 cut(s)	103
BanII	GRGCYC	3 cut(s)	120, 267, 461
BauI	CACGAG	2 cut(s)	251, 287
BbsI	GAAGAC	1 cut(s)	1010
Bbv12I	GWGCWC	2 cut(s)	120, 267
BbvI	GCAGC	3 cut(s)	835, 864, 940
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	3 cut(s)	587, 613, 670
BciT130I	CCWGG	4 cut(s)	383, 679, 809, 895
BciVI	GTATCC	1 cut(s)	1028
BcnI	CCSGG	4 cut(s)	450, 583, 694, 1009
BcoDI	GTCTC	5 cut(s)	33, 70, 115, 181, 727
BfaI	CTAG	1 cut(s)	545
BfoI	RGCGCY	2 cut(s)	732, 953
BfuI	GTATCC	1 cut(s)	1028
BglI	GCCNNNNNGGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	240, 306, 824, 878, 929
BlsI	GCNGC	5 cut(s)	241, 307, 825, 879, 930
Bme1390I	CCNGG	8 cut(s)	383, 450, 583, 679, 694, 809, 895, 1009
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	103, 446, 554
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	8 cut(s)	383, 450, 583, 679, 694, 809, 895, 1009
BpiI	GAAGAC	1 cut(s)	1010
BpuMI	CCSGG	4 cut(s)	450, 583, 694, 1009
BsaBI	GATNNNNATC	1 cut(s)	142
BsaHI	GRCGYC	3 cut(s)	237, 414, 626
BsaJI	CCNNGG	5 cut(s)	677, 678, 693, 808, 894
BsaWI	WCCGGW	2 cut(s)	259, 774
BsaXI	ACNNNNNCTCC	8 cut(s)	13, 43, 249, 278, 279, 308, 323, 353
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 684, 814
Bse1I	ACTGG	1 cut(s)	1004
Bse8I	GATNNNNATC	1 cut(s)	142
BseBI	CCWGG	4 cut(s)	383, 679, 809, 895
BseDI	CCNNGG	5 cut(s)	677, 678, 693, 808, 894
BseGI	GGATG	2 cut(s)	432, 594
BseJI	GATNNNNATC	1 cut(s)	142
BseLI	CCNNNNNNNGG	3 cut(s)	112, 684, 814
BseNI	ACTGG	1 cut(s)	1004
BseRI	GAGGAG	3 cut(s)	65, 82, 212
BseXI	GCAGC	3 cut(s)	835, 864, 940
Bsh1285I	CGRYCG	1 cut(s)	775
BshFI	GGCC	4 cut(s)	448, 555, 770, 1033
BsiEI	CGRYCG	1 cut(s)	775
BsiHKAI	GWGCWC	2 cut(s)	120, 267
BsiSI	CCGG	8 cut(s)	147, 260, 449, 583, 693, 726, 775, 1008
BslI	CCNNNNNNNGG	3 cut(s)	112, 684, 814
BsmAI	GTCTC	5 cut(s)	33, 70, 115, 181, 727
BsmBI	CGTCTC	3 cut(s)	70, 115, 181
BsmI	GAATGC	2 cut(s)	825, 928
BsnI	GGCC	4 cut(s)	448, 555, 770, 1033
Bsp1286I	GDGCHC	3 cut(s)	120, 267, 461
Bsp143I	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
BspANI	GGCC	4 cut(s)	448, 555, 770, 1033
BspLI	GGNNCC	1 cut(s)	587
BspPI	GGATC	4 cut(s)	132, 148, 776, 820
BspQI	GCTCTTC	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	1004
BssECI	CCNNGG	5 cut(s)	677, 678, 693, 808, 894
BssMI	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
BssNAI	GTATAC	1 cut(s)	861
BssNI	GRCGYC	3 cut(s)	237, 414, 626
BssSI	CACGAG	2 cut(s)	251, 287
Bst1107I	GTATAC	1 cut(s)	861
Bst2BI	CACGAG	2 cut(s)	251, 287
Bst2UI	CCWGG	4 cut(s)	383, 679, 809, 895
Bst6I	CTCTTC	2 cut(s)	83, 365
BstACI	GRCGYC	3 cut(s)	237, 414, 626
BstC8I	GCNNGC	3 cut(s)	569, 875, 882
BstF5I	GGATG	2 cut(s)	432, 594
BstH2I	RGCGCY	2 cut(s)	732, 953
BstHHI	GCGC	3 cut(s)	731, 928, 952
BstKTI	GATC	6 cut(s)	140, 156, 594, 621, 784, 815
BstMAI	GTCTC	5 cut(s)	33, 70, 115, 181, 727
BstMBI	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
BstMCI	CGRYCG	1 cut(s)	775
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 326, 335, 503, 608, 949
BstNI	CCWGG	4 cut(s)	383, 679, 809, 895
BstSCI	CCNGG	8 cut(s)	381, 448, 581, 677, 692, 807, 893, 1007
BstV1I	GCAGC	3 cut(s)	835, 864, 940
BstV2I	GAAGAC	1 cut(s)	1010
BstZ17I	GTATAC	1 cut(s)	861
BsuI	GTATCC	1 cut(s)	1028
BsuRI	GGCC	4 cut(s)	448, 555, 770, 1033
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	432, 594
BtsIMutI	CAGTG	1 cut(s)	724
Cac8I	GCNNGC	3 cut(s)	569, 875, 882
CfoI	GCGC	3 cut(s)	731, 928, 952
Cfr13I	GGNCC	3 cut(s)	103, 446, 554
CseI	GACGC	3 cut(s)	245, 403, 634
CviAII	CATG	3 cut(s)	607, 940, 1022
DpnI	GATC	6 cut(s)	139, 155, 593, 620, 783, 814
DpnII	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	2 cut(s)	83, 365
EarI	CTCTTC	2 cut(s)	83, 365
EciI	GGCGGA	4 cut(s)	58, 184, 272, 425
Ecl136II	GAGCTC	2 cut(s)	118, 265
Eco24I	GRGCYC	3 cut(s)	120, 267, 461
Eco47I	GGWCC	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	118, 265
Eco57I	CTGAAG	1 cut(s)	700
EcoICRI	GAGCTC	2 cut(s)	118, 265
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	4 cut(s)	381, 677, 807, 893
EcoT38I	GRGCYC	3 cut(s)	120, 267, 461
Esp3I	CGTCTC	3 cut(s)	70, 115, 181
FaeI	CATG	3 cut(s)	610, 943, 1025
FaiI	YATR	6 cut(s)	608, 734, 861, 941, 1014, 1023
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	3 cut(s)	606, 939, 1021
FauI	CCCGC	3 cut(s)	188, 215, 576
FblI	GTMKAC	2 cut(s)	708, 860
Fnu4HI	GCNGC	5 cut(s)	240, 306, 824, 878, 929
FokI	GGATG	2 cut(s)	419, 581
FriOI	GRGCYC	3 cut(s)	120, 267, 461
Fsp4HI	GCNGC	5 cut(s)	240, 306, 824, 878, 929
FspBI	CTAG	1 cut(s)	545
FspI	TGCGCA	1 cut(s)	927
GlaI	GCGC	3 cut(s)	730, 927, 951
GluI	GCNGC	5 cut(s)	240, 306, 824, 878, 929
HaeII	RGCGCY	2 cut(s)	732, 953
HaeIII	GGCC	4 cut(s)	448, 555, 770, 1033
HapII	CCGG	8 cut(s)	147, 260, 449, 583, 693, 726, 775, 1008
HgaI	GACGC	3 cut(s)	245, 403, 634
HhaI	GCGC	3 cut(s)	731, 928, 952
Hin1I	GRCGYC	3 cut(s)	237, 414, 626
Hin1II	CATG	3 cut(s)	610, 943, 1025
Hin6I	GCGC	3 cut(s)	729, 926, 950
HinP1I	GCGC	3 cut(s)	729, 926, 950
HincII	GTYRAC	2 cut(s)	418, 690
HindII	GTYRAC	2 cut(s)	418, 690
HinfI	GANTC	6 cut(s)	386, 467, 501, 509, 530, 661
HpaII	CCGG	8 cut(s)	147, 260, 449, 583, 693, 726, 775, 1008
HphI	GGTGA	3 cut(s)	76, 154, 181
Hpy166II	GTNNAC	4 cut(s)	418, 690, 709, 861
Hpy188I	TCNGA	7 cut(s)	103, 115, 277, 456, 520, 786, 830
Hpy188III	TCNNGA	7 cut(s)	135, 475, 622, 640, 671, 748, 816
Hpy8I	GTNNAC	4 cut(s)	418, 690, 709, 861
Hpy99I	CGWCG	7 cut(s)	239, 305, 335, 446, 554, 790, 872
HpyAV	CCTTC	3 cut(s)	322, 973, 1044
HpyCH4V	TGCA	2 cut(s)	736, 823
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 326, 335, 503, 608, 949
Hsp92I	GRCGYC	3 cut(s)	237, 414, 626
Hsp92II	CATG	3 cut(s)	610, 943, 1025
HspAI	GCGC	3 cut(s)	729, 926, 950
Kzo9I	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	6 cut(s)	115, 123, 252, 262, 270, 481
Lsp1109I	GCAGC	3 cut(s)	835, 864, 940
MaeI	CTAG	1 cut(s)	545
MalI	GATC	6 cut(s)	139, 155, 593, 620, 783, 814
MboI	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
MboII	GAAGA	9 cut(s)	70, 220, 223, 352, 355, 655, 706, 988, 1015
MhlI	GDGCHC	3 cut(s)	120, 267, 461
MluCI	AATT	3 cut(s)	33, 377, 407
MlyI	GAGTC	4 cut(s)	380, 495, 518, 655
MmeI	TCCRAC	3 cut(s)	300, 586, 809
MroXI	GAANNNNTTC	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	931
MspI	CCGG	8 cut(s)	147, 260, 449, 583, 693, 726, 775, 1008
MspR9I	CCNGG	8 cut(s)	383, 450, 583, 679, 694, 809, 895, 1009
Mva1269I	GAATGC	2 cut(s)	825, 928
MvaI	CCWGG	4 cut(s)	383, 679, 809, 895
MwoI	GCNNNNNNNGC	6 cut(s)	156, 326, 335, 503, 608, 949
NciI	CCSGG	4 cut(s)	450, 583, 694, 1009
NdeII	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
NlaIII	CATG	3 cut(s)	610, 943, 1025
NlaIV	GGNNCC	1 cut(s)	587
NmeAIII	GCCGAG	1 cut(s)	532
NsbI	TGCGCA	1 cut(s)	927
PasI	CCCWGGG	1 cut(s)	678
PciSI	GCTCTTC	1 cut(s)	365
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	2 cut(s)	825, 928
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	467, 530
PflFI	GACNNNGTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	684
PfoI	TCCNGGA	2 cut(s)	381, 581
PkrI	GCNGC	5 cut(s)	241, 307, 825, 879, 930
PleI	GAGTC	4 cut(s)	380, 495, 517, 655
PpsI	GAGTC	4 cut(s)	380, 495, 517, 655
Psp124BI	GAGCTC	2 cut(s)	120, 267
Psp6I	CCWGG	4 cut(s)	381, 677, 807, 893
PspGI	CCWGG	4 cut(s)	381, 677, 807, 893
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	3 cut(s)	103, 446, 554
PsyI	GACNNNGTC	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	944
SacI	GAGCTC	2 cut(s)	120, 267
SapI	GCTCTTC	1 cut(s)	365
SatI	GCNGC	5 cut(s)	240, 306, 824, 878, 929
Sau3AI	GATC	6 cut(s)	137, 153, 591, 618, 781, 812
Sau96I	GGNCC	3 cut(s)	103, 446, 554
SchI	GAGTC	4 cut(s)	380, 495, 518, 655
ScrFI	CCNGG	8 cut(s)	383, 450, 583, 679, 694, 809, 895, 1009
SduI	GDGCHC	3 cut(s)	120, 267, 461
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	944
Sse9I	AATT	3 cut(s)	33, 377, 407
SspMI	CTAG	1 cut(s)	545
SstI	GAGCTC	2 cut(s)	120, 267
StyD4I	CCNGG	8 cut(s)	381, 448, 581, 677, 692, 807, 893, 1007
TaqI	TCGA	4 cut(s)	234, 375, 528, 1037
TasI	AATT	3 cut(s)	33, 377, 407
TauI	GCSGC	2 cut(s)	242, 308
TfiI	GAWTC	2 cut(s)	467, 530
TscAI	CASTG	1 cut(s)	724
TseI	GCWGC	3 cut(s)	823, 877, 928
TspDTI	ATGAA	3 cut(s)	304, 514, 622
TspGWI	ACGGA	2 cut(s)	163, 460
TspRI	CASTG	1 cut(s)	724
Tth111I	GACNNNGTC	1 cut(s)	107
Van91I	CCANNNNNTGG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	377
XmiI	GTMKAC	2 cut(s)	708, 860
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.