AT1G61790

dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013991
Physical Location & Seq
Forward (+)
22814216 .. 22816688
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61790.1

Sequence Viewer

Length: 1041 bp
ATGGCGCTCAAATCAAAACTCGTCTCTCTTCTCTTCCTCATAGCAACACTATCATCCACATTCGCAGCTTCGTTTTCCGATTCGGATTCCGATTCAGATCTTCTCAACGAACTTGTATCTCTCAGATCAACAAGCGAATCAGGCGTAATCCATCTCGATGACCATGGAATCTCAAAATTCCTAACCTCCGCTTCCACGCCTCGTCCTTACTCGTTACTCGTCTTCTTCGACGCTACTCAACTCCACAGCAAAAACGAGCTTCGTCTTCAAGAGCTCCGTCGCGAATTCGGCATCGTCTCCGCTTCATTCCTCGCTAACAACAATGGATCTGAAGGAACTAAGCTTTTCTTCTGTGAGATCGAGTTTTCGAAGTCTCAATCTTCGTTCCAGCTCTTTGGCGTTAACGCTTTACCTCACATTCGTCTTGTAAGTCCTTCGATATCGAATCTACGTGATGAATCTGGTCAAATGGATCAATCGGATTACTCTAGATTAGCTGAATCAATGGCTGAGTTTGTTGAGCAACGAACTAAACTCAAGGTCGGTCCTATTCAACGTCCACCGCTACTTTCGAAACCACAGATCGGTATTATCGTTGCGTTGATCGTTATCGCTACTCCGTTTATCATCAAAAGAGTTTTGAAAGGAGAAACTATTCTTCATGATACTAGACTTTGGTTATCTGGTGCTATCTTCATTTACTTCTTTAGTGTTGCTGGTACAATGCACAACATTATCAGGAAAATGCCGATGTTTCTTCAAGATCGTAACGATCCGAATAAGCTTGTGTTTTTCTACCAAGGATCTGGAATGCAGCTTGGAGCTGAAGGATTTGCTGTTGGATTCTTGTATACTGTTGTTGGATTGCTTTTGGCGTTTGTTACCAATGTGCTTGTTCGAGTGAAGAATATTACTGCACAAAGGTTGATTATGCTTTTGGCTTTGTTCATATCGTTCTGGGCTGTGAAGAAAGTTGTTTACTTGGATAACTGGAAGACTGGATATGGAATTCATCCGTATTGGCCATCGAGTTGGCGTTGA

Protein Analysis

346

Amino Acids

38.81

Weight (kDa)

9.32

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 37 - 335 1.6e-76 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11560 AT1G61790 AT1G61790
fragaria_vesca FvH4_3g02600
malus_domestica MD00G1180300.v1.1 MD10G1315200.v1.1
prunus_persica Prupe.4G025400_v2.0.a1
pyrus_communis pycom05g31100 pycom10g26740
rosa_multiflora Rmu_co8083490.1_g000001 Rmu_sc0011733.1_g000004 Rmu_sc0019391.1_g000006
rosa_roxburghii Rroxscaffold_1G00072070
rosa_rugosa Rorug04G0407700
rosa_samantha Rh5BG033800 Rh5DG034000
rosa_wichuraiana Rw5G003230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 851
AccII CGCG 1 cut(s) 282
AciI CCGC 3 cut(s) 189, 300, 563
AclWI GGATC 4 cut(s) 334, 480, 767, 811
AcoI YGGCCR 1 cut(s) 1022
AcsI RAATTY 3 cut(s) 176, 284, 1008
AcuI CTGAAG 2 cut(s) 351, 846
AfaI GTAC 1 cut(s) 721
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 4 cut(s) 269, 554, 643, 761
AluBI AGCT 9 cut(s) 68, 259, 274, 343, 391, 497, 784, 817, 824
AluI AGCT 9 cut(s) 68, 259, 274, 343, 391, 497, 784, 817, 824
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 3 cut(s) 28, 301, 378
AlwI GGATC 4 cut(s) 334, 480, 767, 811
AoxI GGCC 1 cut(s) 1022
ApeKI GCWGC 2 cut(s) 65, 814
ApoI RAATTY 3 cut(s) 176, 284, 1008
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 545
AsuII TTCGAA 2 cut(s) 368, 572
AvaII GGWCC 1 cut(s) 545
BalI TGGCCA 1 cut(s) 1024
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 3 cut(s) 214, 257, 1001
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 77, 826
BccI CCATC 2 cut(s) 159, 1033
BcoDI GTCTC 3 cut(s) 28, 301, 378
BfaI CTAG 2 cut(s) 489, 669
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 97
BisI GCNGC 2 cut(s) 66, 815
BlsI GCNGC 2 cut(s) 67, 816
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmsI GCATC 1 cut(s) 300
BpiI GAAGAC 3 cut(s) 214, 257, 1001
Bpu14I TTCGAA 2 cut(s) 368, 572
BpuEI CTTGAG 1 cut(s) 521
BsaAI YACGTR 1 cut(s) 452
BsaBI GATNNNNATC 2 cut(s) 96, 608
BsaJI CCNNGG 2 cut(s) 163, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 2 cut(s) 995, 1003
Bse8I GATNNNNATC 2 cut(s) 96, 608
BseDI CCNNGG 2 cut(s) 163, 799
BseGI GGATG 2 cut(s) 53, 1012
BseJI GATNNNNATC 2 cut(s) 96, 608
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 136, 501
BseNI ACTGG 2 cut(s) 995, 1003
BseXI GCAGC 2 cut(s) 77, 826
BsgI GTGCAG 1 cut(s) 900
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 1 cut(s) 1024
BsiHKAI GWGCWC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 3 cut(s) 28, 301, 378
BsmBI CGTCTC 2 cut(s) 28, 301
BsmI GAATGC 1 cut(s) 816
BsnI GGCC 1 cut(s) 1024
Bsp119I TTCGAA 2 cut(s) 368, 572
Bsp1286I GDGCHC 1 cut(s) 276
Bsp19I CCATGG 1 cut(s) 163
Bsp68I TCGCGA 1 cut(s) 282
BspACI CCGC 3 cut(s) 189, 300, 563
BspANI GGCC 1 cut(s) 1024
BspCNI CTCAG 2 cut(s) 135, 502
BspFNI CGCG 1 cut(s) 282
BspHI TCATGA 1 cut(s) 661
BspPI GGATC 4 cut(s) 334, 480, 767, 811
BspT104I TTCGAA 2 cut(s) 368, 572
BsrI ACTGG 2 cut(s) 995, 1003
BssECI CCNNGG 2 cut(s) 163, 799
BssNAI GTATAC 1 cut(s) 852
BssT1I CCWWGG 2 cut(s) 163, 799
Bst1107I GTATAC 1 cut(s) 852
Bst4CI ACNGT 1 cut(s) 856
Bst6I CTCTTC 2 cut(s) 33, 38
BstBAI YACGTR 1 cut(s) 452
BstBI TTCGAA 2 cut(s) 368, 572
BstDEI CTNAG 3 cut(s) 122, 339, 510
BstDSI CCRYGG 1 cut(s) 163
BstF5I GGATG 2 cut(s) 53, 1012
BstFNI CGCG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 3 cut(s) 28, 301, 378
BstMWI GCNNNNNNNGC 2 cut(s) 141, 288
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 77, 826
BstV2I GAAGAC 3 cut(s) 214, 257, 1001
BstX2I RGATCY 3 cut(s) 97, 326, 803
BstXI CCANNNNNNTGG 3 cut(s) 395, 806, 1032
BstYI RGATCY 3 cut(s) 97, 326, 803
BstZ17I GTATAC 1 cut(s) 852
BsuRI GGCC 1 cut(s) 1024
BtgI CCRYGG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 53, 1012
BtuMI TCGCGA 1 cut(s) 282
CciI TCATGA 1 cut(s) 661
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 545
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 720
CviAII CATG 2 cut(s) 164, 662
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 3 cut(s) 122, 339, 510
EaeI YGGCCR 1 cut(s) 1022
Eam1104I CTCTTC 2 cut(s) 33, 38
EarI CTCTTC 2 cut(s) 33, 38
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 163, 799
Eco24I GRGCYC 1 cut(s) 276
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 351, 846
EcoICRI GAGCTC 1 cut(s) 274
EcoRI GAATTC 2 cut(s) 284, 1008
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 2 cut(s) 163, 799
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 163, 799
Esp3I CGTCTC 2 cut(s) 28, 301
FaeI CATG 2 cut(s) 167, 665
FaiI YATR 7 cut(s) 41, 165, 663, 852, 932, 950, 1005
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 2 cut(s) 163, 661
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 2 cut(s) 66, 815
FokI GGATG 2 cut(s) 40, 999
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 2 cut(s) 66, 815
FspBI CTAG 2 cut(s) 489, 669
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 66, 815
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 1024
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 167, 665
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 341, 782
HinfI GANTC 9 cut(s) 80, 86, 92, 137, 168, 445, 458, 500, 843
HpaI GTTAAC 1 cut(s) 403
Hpy166II GTNNAC 4 cut(s) 403, 560, 852, 979
Hpy188I TCNGA 8 cut(s) 79, 85, 91, 97, 125, 331, 481, 777
Hpy188III TCNNGA 8 cut(s) 155, 269, 281, 489, 662, 739, 761, 807
Hpy8I GTNNAC 4 cut(s) 403, 560, 852, 979
Hpy99I CGWCG 2 cut(s) 233, 282
HpyAV CCTTC 3 cut(s) 326, 444, 821
HpyCH4III ACNGT 1 cut(s) 856
HpyCH4IV ACGT 2 cut(s) 451, 556
HpyCH4V TGCA 3 cut(s) 727, 814, 917
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 288
HpyF3I CTNAG 3 cut(s) 122, 339, 510
HpySE526I ACGT 2 cut(s) 451, 556
Hsp92II CATG 2 cut(s) 167, 665
HspAI GCGC 1 cut(s) 5
KspAI GTTAAC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 279, 821
Lsp1109I GCAGC 2 cut(s) 77, 826
LweI GCATC 1 cut(s) 300
MaeI CTAG 2 cut(s) 489, 669
MaeII ACGT 2 cut(s) 451, 556
MaeIII GTNAC 3 cut(s) 213, 767, 880
MflI RGATCY 3 cut(s) 97, 326, 803
MhlI GDGCHC 1 cut(s) 276
MlsI TGGCCA 1 cut(s) 1024
MluCI AATT 3 cut(s) 176, 284, 1008
MluNI TGGCCA 1 cut(s) 1024
MmeI TCCRAC 2 cut(s) 820, 841
MnlI CCTC 5 cut(s) 47, 196, 210, 320, 423
Mox20I TGGCCA 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 654
MscI TGGCCA 1 cut(s) 1024
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 1024
Mva1269I GAATGC 1 cut(s) 816
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 141, 288
NcoI CCATGG 1 cut(s) 163
NlaIII CATG 2 cut(s) 167, 665
NruI TCGCGA 1 cut(s) 282
NspV TTCGAA 2 cut(s) 368, 572
PagI TCATGA 1 cut(s) 661
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 591
PctI GAATGC 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 9 cut(s) 80, 86, 92, 137, 168, 445, 458, 500, 843
PkrI GCNGC 2 cut(s) 67, 816
Ppu21I YACGTR 1 cut(s) 452
Psp124BI GAGCTC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 545
PsuI RGATCY 3 cut(s) 97, 326, 803
RruI TCGCGA 1 cut(s) 282
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
RseI CAYNNNNRTG 1 cut(s) 156
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 2 cut(s) 66, 815
Sau96I GGNCC 1 cut(s) 545
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 1 cut(s) 300
SfuI TTCGAA 2 cut(s) 368, 572
SinI GGWCC 1 cut(s) 545
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 3 cut(s) 176, 284, 1008
SsiI CCGC 3 cut(s) 189, 300, 563
SspI AATATT 1 cut(s) 910
SspMI CTAG 2 cut(s) 489, 669
SstI GAGCTC 1 cut(s) 276
StyI CCWWGG 2 cut(s) 163, 799
TaaI ACNGT 1 cut(s) 856
TaiI ACGT 2 cut(s) 454, 559
TaqI TCGA 9 cut(s) 156, 228, 360, 368, 437, 443, 572, 898, 1028
TaqII GACCGA 1 cut(s) 533
TasI AATT 3 cut(s) 176, 284, 1008
TfiI GAWTC 9 cut(s) 80, 86, 92, 137, 168, 445, 458, 500, 843
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TseI GCWGC 2 cut(s) 65, 814
TspDTI ATGAA 6 cut(s) 294, 471, 650, 685, 937, 1001
TspGWI ACGGA 3 cut(s) 266, 609, 1005
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 3 cut(s) 176, 284, 1008
XbaI TCTAGA 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 851
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 2 cut(s) 489, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.