Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011733.1

Orthogroup ID

OG0013991

Physical Location & Seq

Genomic Coordinates Forward (+)

8981 .. 10006

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011733.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgtctccaattcccaaactacccctctccctcctgctcgtctccgccctcctcttcctcaccgcctcctcccaatcggacctcgtctcggagctccaatccctcgaatcccgatccaaatccggcgtgatccgcttcacagaccaatccgtctcccgcttcctcacctccgcccaaaccccccgcccctactccctcctcatcttcttcgacgccgccaagctccacgagaaaccggagctccacctctccgacctccgccacgagttctccctcgtcgccgcctccttcgtcgccaacaacgccgacgaagcctcgccgtcccactccaagctcttcttcgccgacatcgaattccaggactcgcagagcagcttcgcccaattcggcgtcaactccctgccccacatccgcctcgtcgggccgggtcagagcccgaaagattccgtccagatggagcagggcgatttcgccagactcgccgagtcaatgtccgagttcatcgaatccaagaccaagctagtcgtcggcccaatccaacgcccgccgatgttctcccggaaccagatcatcctcgccgtcatggcgtggctgatctggacgccattcattatcaagaagattatcaacggcaagactctgcttcacgaccccagggtttggttgaccggggcggttttcgtctacttcttcagtgtctccggcgctatgcacaacattatcaggaaaatgccgatgttcttggccgaccggaacgatccgacgaagctggttttcttttaccagggatcgggaatgcagctcggaacagaggggtttgctatcgggttcttgtatactatcgtcggcttgctgctggcgtttcttaccagggtgcttgtgagggttaggaatgtgaatgcgcagcggattgttatggttgtggcgctggtggtttcgttttgggctgtgaagaaggtggtgtatttggataactggaagaccgggtatggtatccatgctttctggccttcgagctggaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0031984 GO:0032501 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

OST3_OST6

Protein Analysis

341

Amino Acids

38.25

Weight (kDa)

9.57

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11560 AT1G61790 AT1G61790
fragaria_vesca	FvH4_3g02600
malus_domestica	MD00G1180300.v1.1 MD10G1315200.v1.1
prunus_persica	Prupe.4G025400_v2.0.a1
pyrus_communis	pycom05g31100 pycom10g26740
rosa_multiflora	Rmu_co8083490.1_g000001 Rmu_sc0011733.1_g000004 Rmu_sc0019391.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072070
rosa_rugosa	Rorug04G0407700
rosa_samantha	Rh5BG033800 Rh5DG034000
rosa_wichuraiana	Rw5G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
Acc16I	TGCGCA	1 cut(s)	903
AccB7I	CCANNNNNTGG	1 cut(s)	660
AccI	GTMKAC	2 cut(s)	684, 836
AclWI	GGATC	4 cut(s)	108, 124, 752, 796
AcoI	YGGCCR	1 cut(s)	744
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	676
AcyI	GRCGYC	3 cut(s)	213, 390, 602
AfiI	CCNNNNNNNGG	3 cut(s)	88, 660, 790
AjnI	CCWGG	4 cut(s)	357, 653, 783, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	9 cut(s)	94, 223, 241, 334, 375, 520, 769, 802, 1017
AluI	AGCT	9 cut(s)	94, 223, 241, 334, 375, 520, 769, 802, 1017
Alw21I	GWGCWC	2 cut(s)	96, 243
Alw26I	GTCTC	5 cut(s)	9, 46, 91, 157, 703
AlwI	GGATC	4 cut(s)	108, 124, 752, 796
AoxI	GGCC	4 cut(s)	422, 529, 744, 1007
ApeKI	GCWGC	4 cut(s)	372, 799, 853, 904
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	3 cut(s)	707, 904, 928
AspS9I	GGNCC	3 cut(s)	79, 422, 530
AsuC2I	CCSGG	4 cut(s)	426, 559, 670, 985
AsuHPI	GGTGA	2 cut(s)	52, 157
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	3 cut(s)	96, 243, 437
BauI	CACGAG	2 cut(s)	227, 263
BbsI	GAAGAC	1 cut(s)	986
Bbv12I	GWGCWC	2 cut(s)	96, 243
BbvI	GCAGC	4 cut(s)	384, 811, 840, 916
BccI	CCATC	1 cut(s)	448
BceAI	ACGGC	3 cut(s)	304, 563, 646
BciT130I	CCWGG	4 cut(s)	359, 655, 785, 871
BciVI	GTATCC	1 cut(s)	1004
BcnI	CCSGG	4 cut(s)	426, 559, 670, 985
BcoDI	GTCTC	5 cut(s)	9, 46, 91, 157, 703
BfaI	CTAG	1 cut(s)	521
BfoI	RGCGCY	2 cut(s)	708, 929
BfuI	GTATCC	1 cut(s)	1004
BglI	GCCNNNNNGGC	1 cut(s)	584
BisI	GCNGC	6 cut(s)	216, 282, 373, 800, 854, 905
BlsI	GCNGC	6 cut(s)	217, 283, 374, 801, 855, 906
Bme1390I	CCNGG	8 cut(s)	359, 426, 559, 655, 670, 785, 871, 985
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	3 cut(s)	79, 422, 530
BmiI	GGNNCC	1 cut(s)	563
BmrFI	CCNGG	8 cut(s)	359, 426, 559, 655, 670, 785, 871, 985
BpiI	GAAGAC	1 cut(s)	986
BpuMI	CCSGG	4 cut(s)	426, 559, 670, 985
BsaBI	GATNNNNATC	1 cut(s)	118
BsaHI	GRCGYC	3 cut(s)	213, 390, 602
BsaJI	CCNNGG	5 cut(s)	653, 654, 669, 784, 870
BsaWI	WCCGGW	2 cut(s)	235, 750
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 254, 255, 284
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 660, 790
Bse1I	ACTGG	1 cut(s)	980
Bse8I	GATNNNNATC	1 cut(s)	118
BseBI	CCWGG	4 cut(s)	359, 655, 785, 871
BseDI	CCNNGG	5 cut(s)	653, 654, 669, 784, 870
BseGI	GGATG	2 cut(s)	408, 570
BseJI	GATNNNNATC	1 cut(s)	118
BseLI	CCNNNNNNNGG	3 cut(s)	88, 660, 790
BseNI	ACTGG	1 cut(s)	980
BseRI	GAGGAG	3 cut(s)	41, 58, 188
BseXI	GCAGC	4 cut(s)	384, 811, 840, 916
Bsh1285I	CGRYCG	1 cut(s)	751
BshFI	GGCC	4 cut(s)	424, 531, 746, 1009
BsiEI	CGRYCG	1 cut(s)	751
BsiHKAI	GWGCWC	2 cut(s)	96, 243
BsiSI	CCGG	8 cut(s)	123, 236, 425, 559, 669, 702, 751, 984
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	88, 660, 790
BsmAI	GTCTC	5 cut(s)	9, 46, 91, 157, 703
BsmBI	CGTCTC	3 cut(s)	46, 91, 157
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	2 cut(s)	801, 904
BsnI	GGCC	4 cut(s)	424, 531, 746, 1009
Bsp1286I	GDGCHC	3 cut(s)	96, 243, 437
Bsp143I	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
BspANI	GGCC	4 cut(s)	424, 531, 746, 1009
BspLI	GGNNCC	1 cut(s)	563
BspPI	GGATC	4 cut(s)	108, 124, 752, 796
BspQI	GCTCTTC	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	980
BssECI	CCNNGG	5 cut(s)	653, 654, 669, 784, 870
BssMI	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
BssNAI	GTATAC	1 cut(s)	837
BssNI	GRCGYC	3 cut(s)	213, 390, 602
BssSI	CACGAG	2 cut(s)	227, 263
Bst1107I	GTATAC	1 cut(s)	837
Bst2BI	CACGAG	2 cut(s)	227, 263
Bst2UI	CCWGG	4 cut(s)	359, 655, 785, 871
Bst6I	CTCTTC	2 cut(s)	59, 341
BstACI	GRCGYC	3 cut(s)	213, 390, 602
BstC8I	GCNNGC	3 cut(s)	545, 851, 858
BstF5I	GGATG	2 cut(s)	408, 570
BstH2I	RGCGCY	2 cut(s)	708, 929
BstHHI	GCGC	3 cut(s)	707, 904, 928
BstKTI	GATC	6 cut(s)	116, 132, 570, 597, 760, 791
BstMAI	GTCTC	5 cut(s)	9, 46, 91, 157, 703
BstMBI	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
BstMCI	CGRYCG	1 cut(s)	751
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 302, 311, 479, 584
BstNI	CCWGG	4 cut(s)	359, 655, 785, 871
BstSCI	CCNGG	8 cut(s)	357, 424, 557, 653, 668, 783, 869, 983
BstV1I	GCAGC	4 cut(s)	384, 811, 840, 916
BstV2I	GAAGAC	1 cut(s)	986
BstZ17I	GTATAC	1 cut(s)	837
BsuI	GTATCC	1 cut(s)	1004
BsuRI	GGCC	4 cut(s)	424, 531, 746, 1009
BtsCI	GGATG	2 cut(s)	408, 570
BtsIMutI	CAGTG	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	545, 851, 858
CfoI	GCGC	3 cut(s)	707, 904, 928
Cfr13I	GGNCC	3 cut(s)	79, 422, 530
CseI	GACGC	3 cut(s)	221, 379, 610
CviAII	CATG	2 cut(s)	583, 998
DpnI	GATC	6 cut(s)	115, 131, 569, 596, 759, 790
DpnII	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	744
Eam1104I	CTCTTC	2 cut(s)	59, 341
EarI	CTCTTC	2 cut(s)	59, 341
EciI	GGCGGA	4 cut(s)	34, 160, 248, 401
Ecl136II	GAGCTC	2 cut(s)	94, 241
Eco24I	GRGCYC	3 cut(s)	96, 243, 437
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	2 cut(s)	94, 241
Eco57I	CTGAAG	1 cut(s)	676
EcoICRI	GAGCTC	2 cut(s)	94, 241
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	4 cut(s)	357, 653, 783, 869
EcoT38I	GRGCYC	3 cut(s)	96, 243, 437
Esp3I	CGTCTC	3 cut(s)	46, 91, 157
FaeI	CATG	2 cut(s)	586, 1001
FaiI	YATR	6 cut(s)	584, 710, 837, 917, 990, 999
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	582, 997
FauI	CCCGC	3 cut(s)	164, 191, 552
FblI	GTMKAC	2 cut(s)	684, 836
Fnu4HI	GCNGC	6 cut(s)	216, 282, 373, 800, 854, 905
FokI	GGATG	2 cut(s)	395, 557
FriOI	GRGCYC	3 cut(s)	96, 243, 437
Fsp4HI	GCNGC	6 cut(s)	216, 282, 373, 800, 854, 905
FspBI	CTAG	1 cut(s)	521
FspI	TGCGCA	1 cut(s)	903
GlaI	GCGC	3 cut(s)	706, 903, 927
GluI	GCNGC	6 cut(s)	216, 282, 373, 800, 854, 905
HaeII	RGCGCY	2 cut(s)	708, 929
HaeIII	GGCC	4 cut(s)	424, 531, 746, 1009
HapII	CCGG	8 cut(s)	123, 236, 425, 559, 669, 702, 751, 984
HgaI	GACGC	3 cut(s)	221, 379, 610
HhaI	GCGC	3 cut(s)	707, 904, 928
Hin1I	GRCGYC	3 cut(s)	213, 390, 602
Hin1II	CATG	2 cut(s)	586, 1001
Hin6I	GCGC	3 cut(s)	705, 902, 926
HinP1I	GCGC	3 cut(s)	705, 902, 926
HincII	GTYRAC	2 cut(s)	394, 666
HindII	GTYRAC	2 cut(s)	394, 666
HinfI	GANTC	7 cut(s)	107, 362, 443, 477, 485, 506, 637
HpaII	CCGG	8 cut(s)	123, 236, 425, 559, 669, 702, 751, 984
HphI	GGTGA	2 cut(s)	52, 157
Hpy166II	GTNNAC	4 cut(s)	394, 666, 685, 837
Hpy188I	TCNGA	7 cut(s)	79, 91, 253, 432, 496, 762, 806
Hpy188III	TCNNGA	7 cut(s)	111, 451, 598, 616, 647, 724, 792
Hpy8I	GTNNAC	4 cut(s)	394, 666, 685, 837
Hpy99I	CGWCG	8 cut(s)	215, 281, 296, 311, 422, 530, 766, 848
HpyAV	CCTTC	3 cut(s)	298, 949, 1020
HpyCH4V	TGCA	2 cut(s)	712, 799
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 302, 311, 479, 584
Hsp92I	GRCGYC	3 cut(s)	213, 390, 602
Hsp92II	CATG	2 cut(s)	586, 1001
HspAI	GCGC	3 cut(s)	705, 902, 926
Kzo9I	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	6 cut(s)	91, 99, 228, 238, 246, 457
Lsp1109I	GCAGC	4 cut(s)	384, 811, 840, 916
MaeI	CTAG	1 cut(s)	521
MalI	GATC	6 cut(s)	115, 131, 569, 596, 759, 790
MboI	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
MboII	GAAGA	9 cut(s)	46, 196, 199, 328, 331, 631, 682, 964, 991
MhlI	GDGCHC	3 cut(s)	96, 243, 437
MluCI	AATT	3 cut(s)	9, 353, 383
MlyI	GAGTC	4 cut(s)	356, 471, 494, 631
MmeI	TCCRAC	3 cut(s)	276, 562, 785
MspA1I	CMGCKG	1 cut(s)	907
MspI	CCGG	8 cut(s)	123, 236, 425, 559, 669, 702, 751, 984
MspR9I	CCNGG	8 cut(s)	359, 426, 559, 655, 670, 785, 871, 985
Mva1269I	GAATGC	2 cut(s)	801, 904
MvaI	CCWGG	4 cut(s)	359, 655, 785, 871
MwoI	GCNNNNNNNGC	5 cut(s)	132, 302, 311, 479, 584
NciI	CCSGG	4 cut(s)	426, 559, 670, 985
NdeII	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
NlaIII	CATG	2 cut(s)	586, 1001
NlaIV	GGNNCC	1 cut(s)	563
NmeAIII	GCCGAG	1 cut(s)	508
NsbI	TGCGCA	1 cut(s)	903
PasI	CCCWGGG	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	2 cut(s)	801, 904
PfeI	GAWTC	3 cut(s)	107, 443, 506
PflFI	GACNNNGTC	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	660
PfoI	TCCNGGA	2 cut(s)	357, 557
PkrI	GCNGC	6 cut(s)	217, 283, 374, 801, 855, 906
PleI	GAGTC	4 cut(s)	356, 471, 493, 631
PpsI	GAGTC	4 cut(s)	356, 471, 493, 631
Psp124BI	GAGCTC	2 cut(s)	96, 243
Psp6I	CCWGG	4 cut(s)	357, 653, 783, 869
PspGI	CCWGG	4 cut(s)	357, 653, 783, 869
PspN4I	GGNNCC	1 cut(s)	563
PspPI	GGNCC	3 cut(s)	79, 422, 530
PsyI	GACNNNGTC	1 cut(s)	83
SacI	GAGCTC	2 cut(s)	96, 243
SapI	GCTCTTC	1 cut(s)	341
SatI	GCNGC	6 cut(s)	216, 282, 373, 800, 854, 905
Sau3AI	GATC	6 cut(s)	113, 129, 567, 594, 757, 788
Sau96I	GGNCC	3 cut(s)	79, 422, 530
SchI	GAGTC	4 cut(s)	356, 471, 494, 631
ScrFI	CCNGG	8 cut(s)	359, 426, 559, 655, 670, 785, 871, 985
SduI	GDGCHC	3 cut(s)	96, 243, 437
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	3 cut(s)	9, 353, 383
SspMI	CTAG	1 cut(s)	521
SstI	GAGCTC	2 cut(s)	96, 243
StyD4I	CCNGG	8 cut(s)	357, 424, 557, 653, 668, 783, 869, 983
TaqI	TCGA	5 cut(s)	105, 210, 351, 504, 1013
TasI	AATT	3 cut(s)	9, 353, 383
TauI	GCSGC	2 cut(s)	218, 284
TfiI	GAWTC	3 cut(s)	107, 443, 506
TscAI	CASTG	1 cut(s)	700
TseI	GCWGC	4 cut(s)	372, 799, 853, 904
TspDTI	ATGAA	2 cut(s)	490, 598
TspGWI	ACGGA	2 cut(s)	139, 436
TspRI	CASTG	1 cut(s)	700
Tth111I	GACNNNGTC	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	684, 836
XspI	CTAG	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.