Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0013991

Physical Location & Seq

Genomic Coordinates Reverse (-)

2384731 .. 2385897

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG034000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTCGTCTAAACCAAAGAGTCAAGAGTCAACACTCAAAAATCCAAGTCTTCTTCCTCCTCTTCTTCTTCTTCCTCACAAATCAAAAACCCCAAATTTCCTCTCTGCAATGAGGAAAACCCCAACCCTAACAATGTCTCCAATTCCCAAACTACCCCTCTCCCTCCTCCTCATCTCCGCCCTTCTCTTCCTCACCGCCTCCTCCTCCTCCTCCCAATCGGACCTCGTCTCGGAGCTCCAATCCCTCCAATCCCGATCCAAATCCGGCGTGATCCGCTTCACCGACCAGTCCGTCTCCCGCTTCCTCACCTCCGCCCAAACCCCCCGCCCCTACTCCCTCCTCATCTTCTTCGACGCCGCCAAGCTCCACGAGAAACCGGAGCTCCACCTCTCCGACCTCCGCCGCGAGTTCTCCCTCGTCGCCGCCTCCTTCATCGCCAACAACGCCGACGAAGCCTCGCCGTCCCACTCCAAGCTCTTCTTCGTCGACATCGAATTCCAGGACTCGCAGAACAGCTTCGCCCAATTCGGCGTCAACTCCCTGCCCCACATCCGCCTCGTCGGGCCGGGTCAGAGCCCGAAAGAGTCCGTCCAGATGGAGCAGGGCGATTTCGCCAGACTCGCCGAGTCAATGTCCGAGTTCATCGAATCCAAGACCAAGCTAGTCGTCGGCCCAATCCAACGCCCGCCGATGTTCTCCCGGAACCAGATCATCCTCGCCGTCATGGCGTGGCTGATCTGGACGCCGTTCATTATCAAGAAGATTATCAACGGCAAGACTCTGCTTCACGATCCCAGGGTTTGGTTGACCGGGGCGGTTTTCGTCTACTTCTTCAGTGTCTCCGGCGCTATGCACAACATTATCAGGAAAATGCCAATGTTCTTGGCGGACCGGAACGACCCGACGAAGCTGGTTTTCTTTTATCAGGGATCAGGAATGCAGCTCGGAACAGAGGGGTTTGCTATCGGGTTCTTGTATACTATCGTCGGGTTGCTGCTGGCGTTTCTTACCAGGGTGCTTGTGAGGGTTAGGAATGTGAATGCGCAGCGGATTGTTATGCTTGTGGCGCTGGTGGTTTCGTTTTGGGCTGTGAAGAAGGTGGTGTATTTGGATAACTGGAAGACCGGGTATGGTATCCATGCTTTCTGGCCTTCGAGCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0031984 GO:0032501 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

OST3_OST6

Protein Analysis

388

Amino Acids

43.48

Weight (kDa)

9.99

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST3_OST6	PF04756	78 - 377	3.9e-77	OST3 / OST6 family, transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11560 AT1G61790 AT1G61790
fragaria_vesca	FvH4_3g02600
malus_domestica	MD00G1180300.v1.1 MD10G1315200.v1.1
prunus_persica	Prupe.4G025400_v2.0.a1
pyrus_communis	pycom05g31100 pycom10g26740
rosa_multiflora	Rmu_co8083490.1_g000001 Rmu_sc0011733.1_g000004 Rmu_sc0019391.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072070
rosa_rugosa	Rorug04G0407700
rosa_samantha	Rh5BG033800 Rh5DG034000
rosa_wichuraiana	Rw5G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
Acc16I	TGCGCA	1 cut(s)	1044
AccB7I	CCANNNNNTGG	1 cut(s)	801
AccI	GTMKAC	3 cut(s)	486, 825, 977
AccII	CGCG	1 cut(s)	405
AclWI	GGATC	4 cut(s)	249, 265, 785, 937
AcsI	RAATTY	2 cut(s)	94, 494
AcuI	CTGAAG	1 cut(s)	817
AcyI	GRCGYC	3 cut(s)	354, 531, 743
AfiI	CCNNNNNNNGG	2 cut(s)	229, 801
AjnI	CCWGG	3 cut(s)	498, 794, 1010
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	9 cut(s)	235, 364, 382, 475, 516, 661, 910, 943, 1158
AluI	AGCT	9 cut(s)	235, 364, 382, 475, 516, 661, 910, 943, 1158
Alw21I	GWGCWC	2 cut(s)	237, 384
Alw26I	GTCTC	4 cut(s)	141, 232, 298, 844
AlwI	GGATC	4 cut(s)	249, 265, 785, 937
AoxI	GGCC	3 cut(s)	563, 670, 1148
ApeKI	GCWGC	3 cut(s)	940, 994, 1045
ApoI	RAATTY	2 cut(s)	94, 494
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	3 cut(s)	848, 1045, 1069
AspS9I	GGNCC	4 cut(s)	220, 563, 671, 889
AsuC2I	CCSGG	4 cut(s)	567, 700, 811, 1126
AsuHPI	GGTGA	3 cut(s)	184, 271, 298
AvaII	GGWCC	2 cut(s)	220, 889
BanII	GRGCYC	3 cut(s)	237, 384, 578
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	41, 1127
Bbv12I	GWGCWC	2 cut(s)	237, 384
BbvI	GCAGC	3 cut(s)	952, 981, 1057
BccI	CCATC	1 cut(s)	589
BceAI	ACGGC	4 cut(s)	445, 704, 730, 787
BciT130I	CCWGG	3 cut(s)	500, 796, 1012
BciVI	GTATCC	1 cut(s)	1145
BcnI	CCSGG	4 cut(s)	567, 700, 811, 1126
BcoDI	GTCTC	4 cut(s)	141, 232, 298, 844
BfaI	CTAG	1 cut(s)	662
BfoI	RGCGCY	2 cut(s)	849, 1070
BfuI	GTATCC	1 cut(s)	1145
BglI	GCCNNNNNGGC	1 cut(s)	725
BisI	GCNGC	6 cut(s)	357, 403, 423, 941, 995, 1046
BlsI	GCNGC	6 cut(s)	358, 404, 424, 942, 996, 1047
Bme1390I	CCNGG	7 cut(s)	500, 567, 700, 796, 811, 1012, 1126
Bme18I	GGWCC	2 cut(s)	220, 889
BmgT120I	GGNCC	4 cut(s)	220, 563, 671, 889
BmiI	GGNNCC	1 cut(s)	704
BmrFI	CCNGG	7 cut(s)	500, 567, 700, 796, 811, 1012, 1126
BpiI	GAAGAC	2 cut(s)	41, 1127
BpuMI	CCSGG	4 cut(s)	567, 700, 811, 1126
BsaBI	GATNNNNATC	1 cut(s)	259
BsaHI	GRCGYC	3 cut(s)	354, 531, 743
BsaJI	CCNNGG	4 cut(s)	794, 795, 810, 1011
BsaWI	WCCGGW	2 cut(s)	376, 891
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 366, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 801
Bse1I	ACTGG	2 cut(s)	286, 1121
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	259
BseBI	CCWGG	3 cut(s)	500, 796, 1012
BseDI	CCNNGG	4 cut(s)	794, 795, 810, 1011
BseGI	GGATG	2 cut(s)	549, 711
BseJI	GATNNNNATC	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	229, 801
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	286, 1121
BseRI	GAGGAG	8 cut(s)	48, 155, 158, 190, 193, 196, 199, 329
BseXI	GCAGC	3 cut(s)	952, 981, 1057
Bsh1236I	CGCG	1 cut(s)	405
BshFI	GGCC	3 cut(s)	565, 672, 1150
BsiHKAI	GWGCWC	2 cut(s)	237, 384
BsiSI	CCGG	8 cut(s)	264, 377, 566, 700, 810, 843, 892, 1125
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	2 cut(s)	229, 801
BsmAI	GTCTC	4 cut(s)	141, 232, 298, 844
BsmBI	CGTCTC	2 cut(s)	232, 298
BsmFI	GGGAC	1 cut(s)	448
BsmI	GAATGC	2 cut(s)	942, 1045
BsnI	GGCC	3 cut(s)	565, 672, 1150
Bsp1286I	GDGCHC	3 cut(s)	237, 384, 578
Bsp143I	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
BspANI	GGCC	3 cut(s)	565, 672, 1150
BspFNI	CGCG	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	704
BspPI	GGATC	4 cut(s)	249, 265, 785, 937
BspQI	GCTCTTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	286, 1121
BssECI	CCNNGG	4 cut(s)	794, 795, 810, 1011
BssMI	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
BssNAI	GTATAC	1 cut(s)	978
BssNI	GRCGYC	3 cut(s)	354, 531, 743
BssSI	CACGAG	1 cut(s)	368
Bst1107I	GTATAC	1 cut(s)	978
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	3 cut(s)	500, 796, 1012
Bst6I	CTCTTC	3 cut(s)	66, 191, 482
BstACI	GRCGYC	3 cut(s)	354, 531, 743
BstC8I	GCNNGC	2 cut(s)	686, 999
BstF5I	GGATG	2 cut(s)	549, 711
BstFNI	CGCG	1 cut(s)	405
BstH2I	RGCGCY	2 cut(s)	849, 1070
BstHHI	GCGC	3 cut(s)	848, 1045, 1069
BstKTI	GATC	6 cut(s)	257, 273, 711, 738, 793, 932
BstMAI	GTCTC	4 cut(s)	141, 232, 298, 844
BstMBI	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
BstMWI	GCNNNNNNNGC	6 cut(s)	273, 443, 452, 620, 725, 1066
BstNI	CCWGG	3 cut(s)	500, 796, 1012
BstSCI	CCNGG	7 cut(s)	498, 565, 698, 794, 809, 1010, 1124
BstUI	CGCG	1 cut(s)	405
BstV1I	GCAGC	3 cut(s)	952, 981, 1057
BstV2I	GAAGAC	2 cut(s)	41, 1127
BstZ17I	GTATAC	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	1145
BsuRI	GGCC	3 cut(s)	565, 672, 1150
BtgZI	GCGATG	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	549, 711
BtsIMutI	CAGTG	1 cut(s)	841
Cac8I	GCNNGC	2 cut(s)	686, 999
CfoI	GCGC	3 cut(s)	848, 1045, 1069
Cfr13I	GGNCC	4 cut(s)	220, 563, 671, 889
CpoI	CGGWCCG	1 cut(s)	889
CseI	GACGC	3 cut(s)	362, 520, 751
CspI	CGGWCCG	1 cut(s)	889
CviAII	CATG	2 cut(s)	724, 1139
DpnI	GATC	6 cut(s)	256, 272, 710, 737, 792, 931
DpnII	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	3 cut(s)	66, 191, 482
EarI	CTCTTC	3 cut(s)	66, 191, 482
EciI	GGCGGA	5 cut(s)	166, 301, 389, 542, 902
Ecl136II	GAGCTC	2 cut(s)	235, 382
Eco24I	GRGCYC	3 cut(s)	237, 384, 578
Eco47I	GGWCC	2 cut(s)	220, 889
Eco53kI	GAGCTC	2 cut(s)	235, 382
Eco57I	CTGAAG	1 cut(s)	817
EcoICRI	GAGCTC	2 cut(s)	235, 382
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	3 cut(s)	498, 794, 1010
EcoT38I	GRGCYC	3 cut(s)	237, 384, 578
Esp3I	CGTCTC	2 cut(s)	232, 298
FaeI	CATG	2 cut(s)	727, 1142
FaiI	YATR	6 cut(s)	725, 851, 978, 1058, 1131, 1140
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	723, 1138
FauI	CCCGC	3 cut(s)	305, 332, 693
FblI	GTMKAC	3 cut(s)	486, 825, 977
Fnu4HI	GCNGC	6 cut(s)	357, 403, 423, 941, 995, 1046
FokI	GGATG	2 cut(s)	536, 698
FriOI	GRGCYC	3 cut(s)	237, 384, 578
Fsp4HI	GCNGC	6 cut(s)	357, 403, 423, 941, 995, 1046
FspBI	CTAG	1 cut(s)	662
FspI	TGCGCA	1 cut(s)	1044
GlaI	GCGC	3 cut(s)	847, 1044, 1068
GluI	GCNGC	6 cut(s)	357, 403, 423, 941, 995, 1046
HaeII	RGCGCY	2 cut(s)	849, 1070
HaeIII	GGCC	3 cut(s)	565, 672, 1150
HapII	CCGG	8 cut(s)	264, 377, 566, 700, 810, 843, 892, 1125
HgaI	GACGC	3 cut(s)	362, 520, 751
HhaI	GCGC	3 cut(s)	848, 1045, 1069
Hin1I	GRCGYC	3 cut(s)	354, 531, 743
Hin1II	CATG	2 cut(s)	727, 1142
Hin6I	GCGC	3 cut(s)	846, 1043, 1067
HinP1I	GCGC	3 cut(s)	846, 1043, 1067
HincII	GTYRAC	4 cut(s)	30, 487, 535, 807
HindII	GTYRAC	4 cut(s)	30, 487, 535, 807
HinfI	GANTC	8 cut(s)	19, 26, 503, 584, 618, 626, 647, 778
HpaII	CCGG	8 cut(s)	264, 377, 566, 700, 810, 843, 892, 1125
HphI	GGTGA	3 cut(s)	184, 271, 298
Hpy166II	GTNNAC	6 cut(s)	30, 487, 535, 807, 826, 978
Hpy188I	TCNGA	6 cut(s)	220, 232, 394, 573, 637, 947
Hpy188III	TCNNGA	8 cut(s)	23, 252, 592, 739, 757, 788, 865, 933
Hpy8I	GTNNAC	6 cut(s)	30, 487, 535, 807, 826, 978
Hpy99I	CGWCG	8 cut(s)	356, 422, 452, 488, 563, 671, 907, 989
HpyAV	CCTTC	4 cut(s)	191, 439, 1090, 1161
HpyCH4V	TGCA	3 cut(s)	107, 853, 940
HpyF10VI	GCNNNNNNNGC	6 cut(s)	273, 443, 452, 620, 725, 1066
Hsp92I	GRCGYC	3 cut(s)	354, 531, 743
Hsp92II	CATG	2 cut(s)	727, 1142
HspAI	GCGC	3 cut(s)	846, 1043, 1067
Kzo9I	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
LguI	GCTCTTC	1 cut(s)	482
LmnI	GCTCC	6 cut(s)	232, 240, 369, 379, 387, 598
Lsp1109I	GCAGC	3 cut(s)	952, 981, 1057
MaeI	CTAG	1 cut(s)	662
MalI	GATC	6 cut(s)	256, 272, 710, 737, 792, 931
MboI	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
MhlI	GDGCHC	3 cut(s)	237, 384, 578
MluCI	AATT	4 cut(s)	94, 141, 494, 524
MlyI	GAGTC	7 cut(s)	28, 35, 497, 593, 612, 635, 772
MmeI	TCCRAC	2 cut(s)	417, 703
MroXI	GAANNNNTTC	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	1048
MspI	CCGG	8 cut(s)	264, 377, 566, 700, 810, 843, 892, 1125
MspR9I	CCNGG	7 cut(s)	500, 567, 700, 796, 811, 1012, 1126
Mva1269I	GAATGC	2 cut(s)	942, 1045
MvaI	CCWGG	3 cut(s)	500, 796, 1012
MvnI	CGCG	1 cut(s)	405
MwoI	GCNNNNNNNGC	6 cut(s)	273, 443, 452, 620, 725, 1066
NciI	CCSGG	4 cut(s)	567, 700, 811, 1126
NdeII	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
NlaIII	CATG	2 cut(s)	727, 1142
NlaIV	GGNNCC	1 cut(s)	704
NmeAIII	GCCGAG	1 cut(s)	649
NsbI	TGCGCA	1 cut(s)	1044
PasI	CCCWGGG	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PctI	GAATGC	2 cut(s)	942, 1045
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	647
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	801
PfoI	TCCNGGA	2 cut(s)	498, 698
PkrI	GCNGC	6 cut(s)	358, 404, 424, 942, 996, 1047
PleI	GAGTC	7 cut(s)	27, 34, 497, 592, 612, 634, 772
PpsI	GAGTC	7 cut(s)	27, 34, 497, 592, 612, 634, 772
Psp124BI	GAGCTC	2 cut(s)	237, 384
Psp6I	CCWGG	3 cut(s)	498, 794, 1010
PspGI	CCWGG	3 cut(s)	498, 794, 1010
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	4 cut(s)	220, 563, 671, 889
PsyI	GACNNNGTC	1 cut(s)	224
Rsr2I	CGGWCCG	1 cut(s)	889
RsrII	CGGWCCG	1 cut(s)	889
SacI	GAGCTC	2 cut(s)	237, 384
SalI	GTCGAC	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	482
SatI	GCNGC	6 cut(s)	357, 403, 423, 941, 995, 1046
Sau3AI	GATC	6 cut(s)	254, 270, 708, 735, 790, 929
Sau96I	GGNCC	4 cut(s)	220, 563, 671, 889
SchI	GAGTC	7 cut(s)	28, 35, 497, 593, 612, 635, 772
ScrFI	CCNGG	7 cut(s)	500, 567, 700, 796, 811, 1012, 1126
SduI	GDGCHC	3 cut(s)	237, 384, 578
SinI	GGWCC	2 cut(s)	220, 889
Sse9I	AATT	4 cut(s)	94, 141, 494, 524
SspMI	CTAG	1 cut(s)	662
SstI	GAGCTC	2 cut(s)	237, 384
StyD4I	CCNGG	7 cut(s)	498, 565, 698, 794, 809, 1010, 1124
TaqI	TCGA	5 cut(s)	351, 486, 492, 645, 1154
TasI	AATT	4 cut(s)	94, 141, 494, 524
TauI	GCSGC	3 cut(s)	359, 405, 425
TfiI	GAWTC	1 cut(s)	647
TscAI	CASTG	1 cut(s)	841
TseI	GCWGC	3 cut(s)	940, 994, 1045
TspDTI	ATGAA	3 cut(s)	421, 631, 739
TspGWI	ACGGA	2 cut(s)	280, 577
TspRI	CASTG	1 cut(s)	841
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	801
VpaK11BI	GGWCC	2 cut(s)	220, 889
XapI	RAATTY	2 cut(s)	94, 494
XmiI	GTMKAC	3 cut(s)	486, 825, 977
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.