FvH4_3g02600

Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
1324979 .. 1325998
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02600.t1

Sequence Viewer

Length: 1020 bp
ATGTCTCCAATTCCCAAACTACCCCTCCTCCTCCTCCTCATCTCCGCCCTCCTCTCCCTCACCGCCTCCGCCGAATCGGACCTCGTCTCGGAGCTCCAGTCCCTCCAATCCCGATCCAAATCCGGCGTCATCCGCCTCACCGACCACTCCGTCTCCCGCTTCCTCACCTCCACCTCTCGCCCCTTCTCCCTCCTCATCTTCTTCGACGCCGCCAAGCTCCACGAGAAGTCGGAGCTCCACCTCACCGACCTCCGCCGCGAGTTCGGCCTCGTCGCCGAGTCCTTCATCTCCAACAACGCCGACCCCGCCTCCCCGTCCCACTCAAAGCTCTTCTTCTGCGACGTCGAGTTTCAGGACTCGCAGAGCAGCTTCGCCTTGTTCGGAGTCAACTCCCTGCCCCATATCCGCCTCGTCGGGCCGGGTCAGAACCCGAAAGAGTCCCTCCAGATGGAGCAGGGCGATTTCGCTAGACTCGCTGAGTCAATGTCCGAGTTCATCGAGTCGAAAACCAAGCTTACGGTTGGACCGATCCACCGGCCGCCGATGTTCTCCCGGAACCAGATCATCCTCGCCGTCATGGCGTGGCTGATCTGGACGCCGTTCATTGTCAAGAAGGCGATCACAGGGAGGACTCTGCTTCATGATCCCAGGGTTTGGTTGAGTGGAGCGGTTTTCGTGTACTTCTTCAGTGTTTCGGGTGCTATGCATAACATTATCAGGAAAATGCCGATGTTTTTGGTTGACCGGAACGATCCCTCGAAGCTGGTTTTCTTCTATCAAGGCTCGGGAATGCAGCTCGGAACAGAGGGGTTTGCTGTTGGGTTCTTGTACACCATTGTGGGGCTGCTGCTGGCGTTTCTTACTAGAGTGCTTGTGAAGGTGAGGAATGTCAATGCGCAGCGGGTTGTTATGCTTGTGGCGCTGGCGGTTTCGTTTTGGGCTGTGAAGAAGGTGGTGTCTTTGGATAACTGGAAGACCGGGTATGGTATCCATGCTTTCTGGCCTACGAGCTGGAACTGA

Protein Analysis

340

Amino Acids

37.91

Weight (kDa)

9.64

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST3_OST6 PF04756 31 - 328 1.2e-76 OST3 / OST6 family, transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013991)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AatII GACGTC 1 cut(s) 345
Acc16I TGCGCA 1 cut(s) 897
AccB7I CCANNNNNTGG 1 cut(s) 654
AccBSI CCGCTC 1 cut(s) 668
AccII CGCG 1 cut(s) 258
AclWI GGATC 4 cut(s) 108, 523, 638, 746
AcoI YGGCCR 1 cut(s) 536
AcuI CTGAAG 1 cut(s) 670
AcyI GRCGYC 4 cut(s) 126, 207, 342, 596
AfaI GTAC 2 cut(s) 680, 830
AfiI CCNNNNNNNGG 4 cut(s) 88, 448, 654, 840
AjnI CCWGG 1 cut(s) 647
AleI CACNNNNGTG 1 cut(s) 836
AluBI AGCT 9 cut(s) 94, 217, 235, 328, 369, 514, 763, 796, 1011
AluI AGCT 9 cut(s) 94, 217, 235, 328, 369, 514, 763, 796, 1011
Alw21I GWGCWC 2 cut(s) 96, 237
Alw26I GTCTC 3 cut(s) 9, 91, 157
AlwI GGATC 4 cut(s) 108, 523, 638, 746
Ama87I CYCGRG 1 cut(s) 784
AoxI GGCC 4 cut(s) 265, 416, 536, 1001
ApeKI GCWGC 5 cut(s) 366, 793, 844, 847, 898
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 2 cut(s) 898, 922
AspS9I GGNCC 3 cut(s) 79, 416, 524
AsuC2I CCSGG 3 cut(s) 420, 553, 979
AsuHPI GGTGA 5 cut(s) 52, 130, 157, 235, 892
AvaI CYCGRG 1 cut(s) 784
AvaII GGWCC 2 cut(s) 79, 524
BanII GRGCYC 2 cut(s) 96, 237
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 980
Bbv12I GWGCWC 2 cut(s) 96, 237
BbvI GCAGC 5 cut(s) 378, 805, 831, 834, 910
BccI CCATC 1 cut(s) 442
BceAI ACGGC 2 cut(s) 557, 583
BciT130I CCWGG 1 cut(s) 649
BciVI GTATCC 1 cut(s) 998
BcnI CCSGG 3 cut(s) 420, 553, 979
BcoDI GTCTC 3 cut(s) 9, 91, 157
BfaI CTAG 2 cut(s) 468, 864
BfoI RGCGCY 1 cut(s) 923
BfuI GTATCC 1 cut(s) 998
BglI GCCNNNNNGGC 1 cut(s) 578
BisI GCNGC 8 cut(s) 210, 256, 367, 539, 794, 845, 848, 899
BlsI GCNGC 8 cut(s) 211, 257, 368, 540, 795, 846, 849, 900
Bme1390I CCNGG 4 cut(s) 420, 553, 649, 979
Bme18I GGWCC 2 cut(s) 79, 524
BmeT110I CYCGRG 1 cut(s) 784
BmgT120I GGNCC 3 cut(s) 79, 416, 524
BmiI GGNNCC 1 cut(s) 557
BmrFI CCNGG 4 cut(s) 420, 553, 649, 979
BpiI GAAGAC 1 cut(s) 980
BpmI CTGGAG 2 cut(s) 80, 428
BpuMI CCSGG 3 cut(s) 420, 553, 979
BsaBI GATNNNNATC 1 cut(s) 118
BsaHI GRCGYC 4 cut(s) 126, 207, 342, 596
BsaJI CCNNGG 2 cut(s) 647, 648
BsaWI WCCGGW 1 cut(s) 744
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 448, 654, 840
Bse118I RCCGGY 1 cut(s) 534
Bse1I ACTGG 2 cut(s) 97, 974
Bse8I GATNNNNATC 1 cut(s) 118
BseBI CCWGG 1 cut(s) 649
BseDI CCNNGG 2 cut(s) 647, 648
BseGI GGATG 2 cut(s) 129, 564
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 4 cut(s) 88, 448, 654, 840
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 97, 974
BseRI GAGGAG 6 cut(s) 17, 20, 23, 26, 41, 182
BseX3I CGGCCG 1 cut(s) 536
BseXI GCAGC 5 cut(s) 378, 805, 831, 834, 910
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 539
BshFI GGCC 4 cut(s) 267, 418, 538, 1003
BsiEI CGRYCG 1 cut(s) 539
BsiHKAI GWGCWC 2 cut(s) 96, 237
BsiHKCI CYCGRG 1 cut(s) 784
BsiSI CCGG 6 cut(s) 123, 419, 535, 553, 745, 978
BslFI GGGAC 3 cut(s) 85, 301, 424
BslI CCNNNNNNNGG 4 cut(s) 88, 448, 654, 840
BsmAI GTCTC 3 cut(s) 9, 91, 157
BsmBI CGTCTC 2 cut(s) 91, 157
BsmFI GGGAC 3 cut(s) 85, 301, 424
BsmI GAATGC 1 cut(s) 795
BsnI GGCC 4 cut(s) 267, 418, 538, 1003
BsoBI CYCGRG 1 cut(s) 784
Bsp1286I GDGCHC 2 cut(s) 96, 237
Bsp1407I TGTACA 1 cut(s) 828
Bsp143I GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
BspANI GGCC 4 cut(s) 267, 418, 538, 1003
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 557
BspPI GGATC 4 cut(s) 108, 523, 638, 746
BspQI GCTCTTC 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 828
BsrI ACTGG 2 cut(s) 97, 974
BssAI RCCGGY 1 cut(s) 534
BssECI CCNNGG 2 cut(s) 647, 648
BssMI GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
BssNI GRCGYC 4 cut(s) 126, 207, 342, 596
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 4 cut(s) 126, 207, 342, 596
BstAUI TGTACA 1 cut(s) 828
BstC8I GCNNGC 2 cut(s) 852, 924
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 129, 564
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 923
BstHHI GCGC 2 cut(s) 898, 922
BstKTI GATC 7 cut(s) 116, 531, 564, 591, 621, 646, 754
BstMAI GTCTC 3 cut(s) 9, 91, 157
BstMBI GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
BstMCI CGRYCG 1 cut(s) 539
BstMWI GCNNNNNNNGC 6 cut(s) 132, 264, 305, 473, 578, 919
BstNI CCWGG 1 cut(s) 649
BstSCI CCNGG 4 cut(s) 418, 551, 647, 977
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 5 cut(s) 378, 805, 831, 834, 910
BstV2I GAAGAC 1 cut(s) 980
BstZI CGGCCG 1 cut(s) 536
BsuI GTATCC 1 cut(s) 998
BsuRI GGCC 4 cut(s) 267, 418, 538, 1003
BtsCI GGATG 2 cut(s) 129, 564
BtsIMutI CAGTG 1 cut(s) 694
Cac8I GCNNGC 2 cut(s) 852, 924
CciI TCATGA 1 cut(s) 640
CfoI GCGC 2 cut(s) 898, 922
Cfr10I RCCGGY 1 cut(s) 534
Cfr13I GGNCC 3 cut(s) 79, 416, 524
CseI GACGC 3 cut(s) 115, 215, 604
Csp6I GTAC 2 cut(s) 679, 829
CviAII CATG 3 cut(s) 577, 641, 992
CviQI GTAC 2 cut(s) 679, 829
DdeI CTNAG 1 cut(s) 477
DpnI GATC 7 cut(s) 115, 530, 563, 590, 620, 645, 753
DpnII GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 536
EagI CGGCCG 1 cut(s) 536
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
EciI GGCGGA 5 cut(s) 34, 58, 122, 242, 395
Ecl136II GAGCTC 2 cut(s) 94, 235
EclXI CGGCCG 1 cut(s) 536
Eco24I GRGCYC 2 cut(s) 96, 237
Eco47I GGWCC 2 cut(s) 79, 524
Eco52I CGGCCG 1 cut(s) 536
Eco53kI GAGCTC 2 cut(s) 94, 235
Eco57I CTGAAG 1 cut(s) 670
Eco88I CYCGRG 1 cut(s) 784
EcoICRI GAGCTC 2 cut(s) 94, 235
EcoRII CCWGG 1 cut(s) 647
EcoT22I ATGCAT 1 cut(s) 708
EcoT38I GRGCYC 2 cut(s) 96, 237
Esp3I CGTCTC 2 cut(s) 91, 157
FaeI CATG 3 cut(s) 580, 644, 995
FaiI YATR 8 cut(s) 402, 578, 642, 704, 708, 911, 984, 993
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 3 cut(s) 85, 301, 424
FatI CATG 3 cut(s) 576, 640, 991
FauI CCCGC 3 cut(s) 164, 313, 894
Fnu4HI GCNGC 8 cut(s) 210, 256, 367, 539, 794, 845, 848, 899
FokI GGATG 2 cut(s) 116, 551
FriOI GRGCYC 2 cut(s) 96, 237
Fsp4HI GCNGC 8 cut(s) 210, 256, 367, 539, 794, 845, 848, 899
FspBI CTAG 2 cut(s) 468, 864
FspI TGCGCA 1 cut(s) 897
GlaI GCGC 2 cut(s) 897, 921
GluI GCNGC 8 cut(s) 210, 256, 367, 539, 794, 845, 848, 899
GsuI CTGGAG 2 cut(s) 80, 428
HaeII RGCGCY 1 cut(s) 923
HaeIII GGCC 4 cut(s) 267, 418, 538, 1003
HapII CCGG 6 cut(s) 123, 419, 535, 553, 745, 978
HgaI GACGC 3 cut(s) 115, 215, 604
HhaI GCGC 2 cut(s) 898, 922
Hin1I GRCGYC 4 cut(s) 126, 207, 342, 596
Hin1II CATG 3 cut(s) 580, 644, 995
Hin6I GCGC 2 cut(s) 896, 920
HinP1I GCGC 2 cut(s) 896, 920
HincII GTYRAC 2 cut(s) 388, 742
HindII GTYRAC 2 cut(s) 388, 742
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 9 cut(s) 74, 278, 356, 384, 437, 471, 479, 500, 631
HpaII CCGG 6 cut(s) 123, 419, 535, 553, 745, 978
HphI GGTGA 5 cut(s) 52, 130, 157, 235, 892
Hpy166II GTNNAC 4 cut(s) 388, 679, 742, 831
Hpy188I TCNGA 7 cut(s) 79, 91, 232, 383, 426, 490, 800
Hpy188III TCNNGA 8 cut(s) 111, 353, 445, 592, 610, 641, 718, 786
Hpy8I GTNNAC 4 cut(s) 388, 679, 742, 831
Hpy99I CGWCG 5 cut(s) 209, 275, 344, 347, 416
HpyAV CCTTC 5 cut(s) 193, 292, 607, 871, 943
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 706, 793
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 264, 305, 473, 578, 919
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 342
Hsp92I GRCGYC 4 cut(s) 126, 207, 342, 596
Hsp92II CATG 3 cut(s) 580, 644, 995
HspAI GCGC 2 cut(s) 896, 920
Kzo9I GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 7 cut(s) 91, 99, 222, 232, 240, 451, 665
Lsp1109I GCAGC 5 cut(s) 378, 805, 831, 834, 910
MaeI CTAG 2 cut(s) 468, 864
MaeII ACGT 1 cut(s) 342
MalI GATC 7 cut(s) 115, 530, 563, 590, 620, 645, 753
MbiI CCGCTC 1 cut(s) 668
MboI GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
MboII GAAGA 8 cut(s) 190, 193, 322, 325, 676, 763, 958, 985
MhlI GDGCHC 2 cut(s) 96, 237
MluCI AATT 1 cut(s) 9
MlyI GAGTC 8 cut(s) 287, 350, 393, 446, 465, 488, 509, 625
MmeI TCCRAC 3 cut(s) 210, 315, 502
Mph1103I ATGCAT 1 cut(s) 708
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 6 cut(s) 123, 419, 535, 553, 745, 978
MspR9I CCNGG 4 cut(s) 420, 553, 649, 979
Mva1269I GAATGC 1 cut(s) 795
MvaI CCWGG 1 cut(s) 649
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 6 cut(s) 132, 264, 305, 473, 578, 919
NciI CCSGG 3 cut(s) 420, 553, 979
NdeII GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
NlaIII CATG 3 cut(s) 580, 644, 995
NlaIV GGNNCC 1 cut(s) 557
NmeAIII GCCGAG 1 cut(s) 301
NsbI TGCGCA 1 cut(s) 897
NsiI ATGCAT 1 cut(s) 708
OliI CACNNNNGTG 1 cut(s) 836
PagI TCATGA 1 cut(s) 640
PasI CCCWGGG 1 cut(s) 648
PciSI GCTCTTC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PctI GAATGC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 74
PflFI GACNNNGTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 654
PfoI TCCNGGA 1 cut(s) 551
PkrI GCNGC 8 cut(s) 211, 257, 368, 540, 795, 846, 849, 900
PleI GAGTC 8 cut(s) 286, 350, 392, 445, 465, 487, 508, 625
PpsI GAGTC 8 cut(s) 286, 350, 392, 445, 465, 487, 508, 625
Psp124BI GAGCTC 2 cut(s) 96, 237
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 3 cut(s) 79, 416, 524
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 2 cut(s) 680, 830
RsaNI GTAC 2 cut(s) 679, 829
RseI CAYNNNNRTG 1 cut(s) 836
SacI GAGCTC 2 cut(s) 96, 237
SapI GCTCTTC 1 cut(s) 335
SatI GCNGC 8 cut(s) 210, 256, 367, 539, 794, 845, 848, 899
Sau3AI GATC 7 cut(s) 113, 528, 561, 588, 618, 643, 751
Sau96I GGNCC 3 cut(s) 79, 416, 524
SchI GAGTC 8 cut(s) 287, 350, 393, 446, 465, 488, 509, 625
ScrFI CCNGG 4 cut(s) 420, 553, 649, 979
SduI GDGCHC 2 cut(s) 96, 237
SinI GGWCC 2 cut(s) 79, 524
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 1 cut(s) 9
SspMI CTAG 2 cut(s) 468, 864
SstI GAGCTC 2 cut(s) 96, 237
StyD4I CCNGG 4 cut(s) 418, 551, 647, 977
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 1 cut(s) 345
TaqI TCGA 5 cut(s) 204, 345, 498, 503, 758
TaqII GACCGA 1 cut(s) 541
TasI AATT 1 cut(s) 9
TatI WGTACW 2 cut(s) 678, 828
TauI GCSGC 3 cut(s) 212, 258, 541
TfiI GAWTC 1 cut(s) 74
TscAI CASTG 1 cut(s) 694
TseI GCWGC 5 cut(s) 366, 793, 844, 847, 898
TspDTI ATGAA 4 cut(s) 274, 484, 592, 629
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 694
Tth111I GACNNNGTC 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 79, 524
XspI CTAG 2 cut(s) 468, 864
ZraI GACGTC 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.