Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013991

Physical Location & Seq

Genomic Coordinates Reverse (-)

2378338 .. 2378910

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG033800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGCAGGGCGATTTCGCCAGACTCGCCGAGTCAATGTCCGAGTTCATCGAATCCAAGACCAAGCTAGTCGTCGGCCCAATCCAACGCCCGCCGATGTTCTCCCGGAACCAGATCATCCTCGCCGTCATGGCGTGGCTGATCTGGACGCCGTTCATTATCAAGAAGATCATCAACGGCAAGACTCTGCTTCACGACCCCAGGGTTTGGTTGACCGGGGCGGTTTTCGTCTACTTCTTCAGTGTCTCCGGCGCTATGCACAACATTATCAGGAAAATGCCGATGTTCCTGGCGGACCGGAACGACCCGACGAAGCTGGTTTTCTTTTACCAGGGTTCGGGAATGCAGCTCGGAACAGAGGGGTTTGCTATCGGGTTCTTGTATACTATCGTCGGGTTGCTGCTGGCGTTTCTTACCAGGGTGCTTGTGAGGGTTAGGAATGTGAATGCGCAGCGGATTGTTATGCTTGTGGCGCTGGTGGTTTCGTTTTGGGCTGTGAAGAAGGTGGTGTATTTGGATAACTGGAAGACCGGGTATGGTATCCATGCTTTCTGGCCTTCGAGCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009507 GO:0009536 GO:0009856 GO:0009987 GO:0010483 GO:0012505 GO:0016020 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0022414 GO:0031984 GO:0032501 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044706 GO:0051703 GO:0051704 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

OST3_OST6

Protein Analysis

190

Amino Acids

21.74

Weight (kDa)

10.16

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OST3_OST6	PF04756	6 - 179	5.2e-44	OST3 / OST6 family, transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11560 AT1G61790 AT1G61790
fragaria_vesca	FvH4_3g02600
malus_domestica	MD00G1180300.v1.1 MD10G1315200.v1.1
prunus_persica	Prupe.4G025400_v2.0.a1
pyrus_communis	pycom05g31100 pycom10g26740
rosa_multiflora	Rmu_co8083490.1_g000001 Rmu_sc0011733.1_g000004 Rmu_sc0019391.1_g000006
rosa_roxburghii	Rroxscaffold_1G00072070
rosa_rugosa	Rorug04G0407700
rosa_samantha	Rh5BG033800 Rh5DG034000
rosa_wichuraiana	Rw5G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	450
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccI	GTMKAC	2 cut(s)	231, 383
AciI	CCGC	4 cut(s)	92, 221, 293, 454
AcuI	CTGAAG	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	207, 337
AjnI	CCWGG	4 cut(s)	200, 288, 330, 416
AluBI	AGCT	4 cut(s)	67, 316, 349, 564
AluI	AGCT	4 cut(s)	67, 316, 349, 564
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	76, 554
ApeKI	GCWGC	3 cut(s)	346, 400, 451
AspLEI	GCGC	3 cut(s)	254, 451, 475
AspS9I	GGNCC	2 cut(s)	77, 295
AsuC2I	CCSGG	3 cut(s)	106, 217, 532
AvaII	GGWCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	3 cut(s)	358, 387, 463
BceAI	ACGGC	3 cut(s)	110, 136, 193
BciT130I	CCWGG	4 cut(s)	202, 290, 332, 418
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	3 cut(s)	106, 217, 532
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	2 cut(s)	255, 476
BfuI	GTATCC	1 cut(s)	551
BglI	GCCNNNNNGGC	1 cut(s)	131
BisI	GCNGC	3 cut(s)	347, 401, 452
BlsI	GCNGC	3 cut(s)	348, 402, 453
Bme1390I	CCNGG	7 cut(s)	106, 202, 217, 290, 332, 418, 532
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	77, 295
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	7 cut(s)	106, 202, 217, 290, 332, 418, 532
BpiI	GAAGAC	1 cut(s)	533
BpuMI	CCSGG	3 cut(s)	106, 217, 532
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	5 cut(s)	200, 201, 216, 331, 417
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 337
Bse1I	ACTGG	1 cut(s)	527
BseBI	CCWGG	4 cut(s)	202, 290, 332, 418
BseDI	CCNNGG	5 cut(s)	200, 201, 216, 331, 417
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	207, 337
BseNI	ACTGG	1 cut(s)	527
BseXI	GCAGC	3 cut(s)	358, 387, 463
BshFI	GGCC	2 cut(s)	78, 556
BsiSI	CCGG	5 cut(s)	106, 216, 249, 298, 531
BslI	CCNNNNNNNGG	2 cut(s)	207, 337
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	2 cut(s)	348, 451
BsnI	GGCC	2 cut(s)	78, 556
Bsp143I	GATC	3 cut(s)	114, 141, 168
BspACI	CCGC	4 cut(s)	92, 221, 293, 454
BspANI	GGCC	2 cut(s)	78, 556
BspLI	GGNNCC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	5 cut(s)	200, 201, 216, 331, 417
BssMI	GATC	3 cut(s)	114, 141, 168
BssNAI	GTATAC	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	149
Bst1107I	GTATAC	1 cut(s)	384
Bst2UI	CCWGG	4 cut(s)	202, 290, 332, 418
BstACI	GRCGYC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	92, 405
BstF5I	GGATG	1 cut(s)	117
BstH2I	RGCGCY	2 cut(s)	255, 476
BstHHI	GCGC	3 cut(s)	254, 451, 475
BstKTI	GATC	3 cut(s)	117, 144, 171
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	114, 141, 168
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 131, 472
BstNI	CCWGG	4 cut(s)	202, 290, 332, 418
BstSCI	CCNGG	7 cut(s)	104, 200, 215, 288, 330, 416, 530
BstV1I	GCAGC	3 cut(s)	358, 387, 463
BstV2I	GAAGAC	1 cut(s)	533
BstZ17I	GTATAC	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	78, 556
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	92, 405
CfoI	GCGC	3 cut(s)	254, 451, 475
Cfr13I	GGNCC	2 cut(s)	77, 295
CpoI	CGGWCCG	1 cut(s)	295
CseI	GACGC	1 cut(s)	157
CspI	CGGWCCG	1 cut(s)	295
CviAII	CATG	2 cut(s)	130, 545
CviJI	RGCY	8 cut(s)	67, 78, 139, 316, 349, 494, 556, 564
CviKI_1	RGCY	8 cut(s)	67, 78, 139, 316, 349, 494, 556, 564
DpnI	GATC	3 cut(s)	116, 143, 170
DpnII	GATC	3 cut(s)	114, 141, 168
EciI	GGCGGA	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	223
EcoRII	CCWGG	4 cut(s)	200, 288, 330, 416
FaeI	CATG	2 cut(s)	133, 548
FaiI	YATR	6 cut(s)	131, 257, 384, 464, 537, 546
FatI	CATG	2 cut(s)	129, 544
FauI	CCCGC	1 cut(s)	99
FblI	GTMKAC	2 cut(s)	231, 383
Fnu4HI	GCNGC	3 cut(s)	347, 401, 452
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	347, 401, 452
FspBI	CTAG	1 cut(s)	68
FspI	TGCGCA	1 cut(s)	450
GlaI	GCGC	3 cut(s)	253, 450, 474
GluI	GCNGC	3 cut(s)	347, 401, 452
HaeII	RGCGCY	2 cut(s)	255, 476
HaeIII	GGCC	2 cut(s)	78, 556
HapII	CCGG	5 cut(s)	106, 216, 249, 298, 531
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	3 cut(s)	254, 451, 475
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	133, 548
Hin6I	GCGC	3 cut(s)	252, 449, 473
HinP1I	GCGC	3 cut(s)	252, 449, 473
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	24, 32, 53, 184
HpaII	CCGG	5 cut(s)	106, 216, 249, 298, 531
Hpy166II	GTNNAC	3 cut(s)	213, 232, 384
Hpy188I	TCNGA	2 cut(s)	43, 353
Hpy188III	TCNNGA	5 cut(s)	145, 163, 194, 271, 339
Hpy8I	GTNNAC	3 cut(s)	213, 232, 384
Hpy99I	CGWCG	3 cut(s)	77, 313, 395
HpyAV	CCTTC	2 cut(s)	496, 567
HpyCH4V	TGCA	2 cut(s)	259, 346
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 131, 472
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	133, 548
HspAI	GCGC	3 cut(s)	252, 449, 473
Kzo9I	GATC	3 cut(s)	114, 141, 168
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	358, 387, 463
MaeI	CTAG	1 cut(s)	68
MalI	GATC	3 cut(s)	116, 143, 170
MboI	GATC	3 cut(s)	114, 141, 168
MboII	GAAGA	4 cut(s)	178, 229, 511, 538
MlyI	GAGTC	3 cut(s)	18, 41, 178
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	131, 352, 423
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	5 cut(s)	106, 216, 249, 298, 531
MspR9I	CCNGG	7 cut(s)	106, 202, 217, 290, 332, 418, 532
Mva1269I	GAATGC	2 cut(s)	348, 451
MvaI	CCWGG	4 cut(s)	202, 290, 332, 418
MwoI	GCNNNNNNNGC	3 cut(s)	26, 131, 472
NciI	CCSGG	3 cut(s)	106, 217, 532
NdeII	GATC	3 cut(s)	114, 141, 168
NlaIII	CATG	2 cut(s)	133, 548
NlaIV	GGNNCC	1 cut(s)	110
NmeAIII	GCCGAG	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	450
PasI	CCCWGGG	1 cut(s)	201
PctI	GAATGC	2 cut(s)	348, 451
PfeI	GAWTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	207
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	348, 402, 453
PleI	GAGTC	3 cut(s)	18, 40, 178
PpsI	GAGTC	3 cut(s)	18, 40, 178
Psp6I	CCWGG	4 cut(s)	200, 288, 330, 416
PspGI	CCWGG	4 cut(s)	200, 288, 330, 416
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	2 cut(s)	77, 295
Rsr2I	CGGWCCG	1 cut(s)	295
RsrII	CGGWCCG	1 cut(s)	295
SatI	GCNGC	3 cut(s)	347, 401, 452
Sau3AI	GATC	3 cut(s)	114, 141, 168
Sau96I	GGNCC	2 cut(s)	77, 295
SchI	GAGTC	3 cut(s)	18, 41, 178
ScrFI	CCNGG	7 cut(s)	106, 202, 217, 290, 332, 418, 532
SetI	ASST	5 cut(s)	69, 318, 351, 507, 566
SinI	GGWCC	1 cut(s)	295
SsiI	CCGC	4 cut(s)	92, 221, 293, 454
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	7 cut(s)	104, 200, 215, 288, 330, 416, 530
TaqI	TCGA	2 cut(s)	51, 560
TfiI	GAWTC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	3 cut(s)	346, 400, 451
TspDTI	ATGAA	2 cut(s)	37, 145
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	231, 383
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.