Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Reverse (-)

3971986 .. 3973294

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATAACATTGTGGACTCATTGAACAAAGCTTATGAGAAGTTTGTTCTTGCTTCAGCTGGTGTTCTTGAGTCTAAAGAGAGTGCAGGTGGACAAAAAGCTTTGCTCACTGATACTGCGTTGGAGAATTTCAAGGAGAAATGGGAACTGTTCCGTGTGGCTTGTGATCAAGCAGAGGAGTTTGTGGAGTCAGTTAAGCAGAGAATTGGATCTGAGTGTTTAGTTGATGAGGCTACTGGTTTAACTACTACTGCAGCAGGTGGCCAAGCACCAGCAGCGGTGACTGGTGCTGCGACTAGTCTCCCTCCCATTAGTGCAGTAAGGCTTGAACAGATGAGTAGAGCGGTTCGATGGCTTGTTCTTGAGCTGCAACGTGGCTCTGGTGTAGCTCCTGGTTCTGTTCATTCATCCTCTACCGGGTTTGATTCTAGATTCTCTGAAGACTCGACTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.01

Weight (kDa)

4.73

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	77, 248
Acc36I	ACCTGC	2 cut(s)	77, 248
AccBSI	CCGCTC	1 cut(s)	344
AciI	CCGC	2 cut(s)	278, 344
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	25, 133, 329
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	5 cut(s)	32, 59, 101, 367, 389
AluI	AGCT	5 cut(s)	32, 59, 101, 367, 389
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	254, 275, 290, 367
ApoI	RAATTY	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	266, 277, 287, 354
BccI	CCATC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	305
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	2 cut(s)	297, 429
BfmI	CTRYAG	1 cut(s)	252
BfuAI	ACCTGC	2 cut(s)	77, 248
BisI	GCNGC	4 cut(s)	255, 276, 291, 368
BlsI	GCNGC	4 cut(s)	256, 277, 292, 369
Bme1390I	CCNGG	2 cut(s)	393, 418
BmrFI	CCNGG	2 cut(s)	393, 418
BpiI	GAAGAC	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	89, 383
BpuMI	CCSGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	241, 289
BseBI	CCWGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	241, 289
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	4 cut(s)	266, 277, 287, 354
BsgI	GTGCAG	2 cut(s)	105, 336
BshFI	GGCC	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	417
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	166, 209
BspACI	CCGC	2 cut(s)	278, 344
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	205
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	2 cut(s)	77, 248
BspPI	GGATC	1 cut(s)	217
BsrBI	CCGCTC	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	241, 289
BssMI	GATC	2 cut(s)	166, 209
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	407
BstKTI	GATC	2 cut(s)	169, 212
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	166, 209
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	391, 416
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	4 cut(s)	266, 277, 287, 354
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	108
BveI	ACCTGC	2 cut(s)	77, 248
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	168, 211
DpnII	GATC	2 cut(s)	166, 209
EaeI	YGGCCR	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	391
FaiI	YATR	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	255, 276, 291, 368
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	4 cut(s)	255, 276, 291, 368
FspBI	CTAG	2 cut(s)	297, 429
GluI	GCNGC	4 cut(s)	255, 276, 291, 368
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	30, 99
HinfI	GANTC	7 cut(s)	17, 71, 188, 425, 432, 443, 448
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	2 cut(s)	16, 92
Hpy188I	TCNGA	2 cut(s)	214, 439
Hpy188III	TCNNGA	3 cut(s)	68, 362, 429
Hpy8I	GTNNAC	2 cut(s)	16, 92
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	86, 254, 317, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	166, 209
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	4 cut(s)	266, 277, 287, 354
MaeI	CTAG	2 cut(s)	297, 429
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	168, 211
MbiI	CCGCTC	1 cut(s)	344
MboI	GATC	2 cut(s)	166, 209
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	2 cut(s)	127, 204
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	5 cut(s)	11, 80, 197, 437, 442
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	169, 223, 315, 421
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	2 cut(s)	195, 242
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	59, 278
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	393, 418
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	2 cut(s)	166, 209
NmuCI	GTSAC	1 cut(s)	280
PaqCI	CACCTGC	2 cut(s)	77, 248
PfeI	GAWTC	2 cut(s)	425, 432
PkrI	GCNGC	4 cut(s)	256, 277, 292, 369
PleI	GAGTC	5 cut(s)	11, 79, 196, 437, 442
PpsI	GAGTC	5 cut(s)	11, 79, 196, 437, 442
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	195, 242
SatI	GCNGC	4 cut(s)	255, 276, 291, 368
Sau3AI	GATC	2 cut(s)	166, 209
SchI	GAGTC	5 cut(s)	11, 80, 197, 437, 442
ScrFI	CCNGG	2 cut(s)	393, 418
SetI	ASST	8 cut(s)	34, 61, 91, 103, 262, 369, 376, 391
SfcI	CTRYAG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	68, 362
SmoI	CTYRAG	2 cut(s)	68, 362
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	2 cut(s)	127, 204
SsiI	CCGC	2 cut(s)	278, 344
SspMI	CTAG	2 cut(s)	297, 429
StyD4I	CCNGG	2 cut(s)	391, 416
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	349, 446
TasI	AATT	2 cut(s)	127, 204
TfiI	GAWTC	2 cut(s)	425, 432
Tru1I	TTAA	2 cut(s)	195, 242
Tru9I	TTAA	2 cut(s)	195, 242
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	4 cut(s)	254, 275, 290, 367
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	392, 396
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	1 cut(s)	127
XbaI	TCTAGA	1 cut(s)	428
XspI	CTAG	2 cut(s)	297, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.