Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Reverse (-)

19054048 .. 19057419

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGACAACATTGTGGATTCTCTAAACAACGCATACCAAGAGTTTGTCGTTGCTGCAGCTAATGTGCTCGAGGCCAAGGAAACTTCTGGCGGCCAAAAAACAACAGCCACGGATACTGCTCTAGAGAGCTTTAAGCAGAAGTGGGAACTTTTCAGAGTGACTTGTGATCAAGCTGAGGAGTTTGTGGAGTCTGTGAAGCAACGGATTGGCTCAGAGTGTTTGGTGGATGAGGCAACTGGCCCTGTGGTAGGGAAGTCTGGGCAAACTACGACAACCGGTCTCCCTCCAATCAGTGCAGTTCGATTGGAACAGATGAGTAAAGCTGTTCGTTGGCTTGTCATAGAACTACAACATGGTTCTGGAACAGCTGCTGGTTCAGCACACTCTCATCAATCAGCTCCCTTCGATGCTAGATTCTCTGAAGATTCAGCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.55

Weight (kDa)

4.79

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgeI	ACCGGT	1 cut(s)	275
AhdI	GACNNNNNGTC	1 cut(s)	276
AluBI	AGCT	7 cut(s)	59, 129, 173, 323, 368, 398, 431
AluI	AGCT	7 cut(s)	59, 129, 173, 323, 368, 398, 431
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	3 cut(s)	72, 91, 238
ApeKI	GCWGC	3 cut(s)	53, 56, 368
AsiGI	ACCGGT	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	40, 68, 355
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	122, 411
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	54, 57, 91, 369
BlsI	GCNGC	4 cut(s)	55, 58, 92, 370
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	239
BmsI	GCATC	1 cut(s)	397
Bpu10I	CCTNAGC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	75, 108
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	75, 108
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	165, 225
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	40, 68, 355
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	74, 93, 240
BshTI	ACCGGT	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	74, 93, 240
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	3 cut(s)	74, 93, 240
BspCNI	CTCAG	2 cut(s)	166, 224
BspMAI	CTGCAG	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	75, 108
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	174, 211
BstDSI	CCRYGG	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	40, 68, 355
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	74, 93, 240
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	298
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	239
CspAI	ACCGGT	1 cut(s)	275
CviAII	CATG	1 cut(s)	353
DdeI	CTNAG	2 cut(s)	174, 211
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DriI	GACNNNNNGTC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	356
FaiI	YATR	4 cut(s)	34, 341, 354, 436
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	54, 57, 91, 369
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	54, 57, 91, 369
FspBI	CTAG	2 cut(s)	122, 411
GluI	GCNGC	4 cut(s)	54, 57, 91, 369
HaeIII	GGCC	3 cut(s)	74, 93, 240
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	1 cut(s)	356
HinfI	GANTC	4 cut(s)	17, 188, 414, 425
HpaII	CCGG	1 cut(s)	276
Hpy188I	TCNGA	3 cut(s)	155, 214, 421
Hpy188III	TCNNGA	2 cut(s)	122, 360
HpyAV	CCTTC	1 cut(s)	412
HpyCH4V	TGCA	2 cut(s)	56, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpyF3I	CTNAG	2 cut(s)	174, 211
Hsp92II	CATG	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	403, 436
LpnPI	CCDG	7 cut(s)	72, 222, 243, 255, 289, 345, 357
Lsp1109I	GCAGC	3 cut(s)	40, 68, 355
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	122, 411
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	64, 169, 223, 294
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	17, 414, 425
PinAI	ACCGGT	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	55, 58, 92, 370
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	371
PvuII	CAGCTG	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	4 cut(s)	54, 57, 91, 369
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	7 cut(s)	61, 131, 175, 325, 370, 400, 433
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	122, 411
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	69, 301, 405
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	17, 414, 425
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	53, 56, 368
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	2 cut(s)	125, 217
TspRI	CASTG	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	2 cut(s)	122, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.