Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Forward (+)

2218690 .. 2221691

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G020100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGACTACATTGTGGATTCCCTAGAGAATGCATACCAAGAGTTTGTCATTGCTGCAACTGATGTGCTCGAAGCCAAGGAAACTTCTGGTGCCCAAAACACACCAGCCATAAAAGCTGCTCTTGAGGCTTTTAAGCATAAATGGGAACTTTTCAAAGTTGCTTGTGATCAAGCTGAGGATTTTGTGGAATCCATGAAGCAAAGGATTGGTTCAGAGTTGCTAATGGACGAGGCAAGTGCCCCAGTGACAAGGAAGTCTGGGCAAATTGGACCAACTGGTCTTCCACCAATTAATGGAGTTAGGTTGCAACATATGTTTAAATCAGTTCGACGACTTCTCACAGAACTTCAACATGGTTCTGTAACTGCTGAAGGTTATGGAACTCCTGCTAGTTCAACACATTCTCATCCAACAACTCCTTTTGATGGTAGATTCTCTGGAGATTCAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.34

Weight (kDa)

5.31

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	253, 276
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	293
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	293, 425
AgsI	TTSAA	4 cut(s)	154, 350, 396, 447
AluBI	AGCT	2 cut(s)	116, 173
AluI	AGCT	2 cut(s)	116, 173
Alw21I	GWGCWC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	53, 116
AseI	ATTAAT	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	2 cut(s)	94, 241
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	40, 103
BccI	CCATC	1 cut(s)	419
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	2 cut(s)	23, 390
BisI	GCNGC	2 cut(s)	54, 117
BlsI	GCNGC	2 cut(s)	55, 118
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	236
BmuI	ACTGGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 425
Bse1I	ACTGG	2 cut(s)	242, 280
Bse3DI	GCAATG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	293, 425
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	242, 280
BseSI	GKGCMC	2 cut(s)	94, 241
BseXI	GCAGC	2 cut(s)	40, 103
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	293, 425
BsmI	GAATGC	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	69, 94, 241
Bsp143I	GATC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	242, 280
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 125
BstSLI	GKGCMC	2 cut(s)	94, 241
BstV1I	GCAGC	2 cut(s)	40, 103
BstV2I	GAAGAC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	269
CviAII	CATG	2 cut(s)	193, 353
CviJI	RGCY	5 cut(s)	74, 107, 116, 128, 173
CviKI_1	RGCY	5 cut(s)	74, 107, 116, 128, 173
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DraI	TTTAAA	1 cut(s)	319
DrdI	GACNNNNNNGTC	2 cut(s)	253, 276
DseDI	GACNNNNNNGTC	2 cut(s)	253, 276
Eco130I	CCWWGG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	2 cut(s)	196, 356
FaiI	YATR	8 cut(s)	34, 110, 138, 194, 312, 314, 354, 378
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	2 cut(s)	192, 352
FauNDI	CATATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	54, 117
FokI	GGATG	1 cut(s)	393
Fsp4HI	GCNGC	2 cut(s)	54, 117
FspBI	CTAG	2 cut(s)	23, 390
GluI	GCNGC	2 cut(s)	54, 117
Hin1II	CATG	2 cut(s)	196, 356
HinfI	GANTC	4 cut(s)	17, 188, 432, 443
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	122, 438
Hpy99I	CGWCG	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	365
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	3 cut(s)	32, 56, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 125
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	196, 356
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	72, 117, 243, 255, 261, 399, 423
Lsp1109I	GCAGC	2 cut(s)	40, 103
MaeI	CTAG	2 cut(s)	23, 390
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	244, 361
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	3 cut(s)	69, 94, 241
MluCI	AATT	2 cut(s)	264, 288
MmeI	TCCRAC	1 cut(s)	434
MnlI	CCTC	3 cut(s)	118, 169, 223
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	3 cut(s)	132, 291, 318
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	113, 125
NdeI	CATATG	1 cut(s)	312
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	196, 356
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	34
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	4 cut(s)	17, 188, 432, 443
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	55, 118
PshBI	ATTAAT	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	132, 291, 318
SatI	GCNGC	2 cut(s)	54, 117
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	269
SduI	GDGCHC	3 cut(s)	69, 94, 241
SetI	ASST	5 cut(s)	118, 175, 305, 376, 452
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	264, 288
SspMI	CTAG	2 cut(s)	23, 390
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	2 cut(s)	69, 328
TasI	AATT	2 cut(s)	264, 288
TfiI	GAWTC	4 cut(s)	17, 188, 432, 443
Tru1I	TTAA	3 cut(s)	132, 291, 318
Tru9I	TTAA	3 cut(s)	132, 291, 318
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	53, 116
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	249
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	291
XspI	CTAG	2 cut(s)	23, 390
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.